Wall clock time and date at job start Fri Apr 10 2020 23:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32687 * 1 3 3 C 1.47664 * 119.99839 * 2 1 4 4 C 1.39717 * 119.99545 * 180.02562 * 3 2 1 5 5 C 1.37598 * 120.00051 * 179.97438 * 4 3 2 6 6 C 1.39740 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00616 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00052 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00346 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00296 * 179.97438 * 9 7 6 11 11 H 1.08998 * 108.44971 * 327.31746 * 10 9 7 12 12 C 1.52566 * 108.51217 * 209.77021 * 10 9 7 13 13 C 1.50887 * 109.35682 * 153.73686 * 12 10 9 14 14 C 1.54296 * 110.23551 * 91.79835 * 13 12 10 15 15 N 1.47609 * 111.93994 * 319.69821 * 14 13 12 16 16 C 1.36938 * 118.64087 * 137.78219 * 15 14 13 17 17 H 1.08003 * 120.00042 * 207.41798 * 16 15 14 18 18 C 1.38818 * 120.00037 * 27.41453 * 16 15 14 19 19 N 1.31611 * 119.99878 * 16.08903 * 18 16 15 20 20 Si 1.86795 * 119.99805 * 195.81406 * 18 16 15 21 21 H 1.48501 * 109.47440 * 89.99968 * 20 18 16 22 22 H 1.48500 * 109.47390 * 209.99889 * 20 18 16 23 23 H 1.48500 * 109.47421 * 330.00028 * 20 18 16 24 24 C 1.44575 * 122.71569 * 317.49671 * 15 14 13 25 25 C 1.47093 * 108.50871 * 85.00349 * 10 9 7 26 26 C 1.39746 * 119.99346 * 0.27674 * 6 5 4 27 27 C 1.37603 * 119.99234 * 359.46545 * 26 6 5 28 28 H 1.07993 * 119.99941 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99918 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99864 * 180.02562 * 2 1 3 31 31 H 1.07995 * 119.99833 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.99933 * 179.97438 * 5 4 3 33 33 H 0.96997 * 119.99650 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.49032 * 273.69659 * 12 10 9 35 35 H 1.08995 * 109.49144 * 33.75113 * 12 10 9 36 36 H 1.08998 * 109.36397 * 212.07589 * 13 12 10 37 37 H 1.08993 * 109.36441 * 331.82100 * 13 12 10 38 38 H 1.09002 * 109.13865 * 199.01785 * 14 13 12 39 39 H 1.08993 * 108.96357 * 80.26469 * 14 13 12 40 40 H 0.97002 * 119.99651 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.45362 * 211.02501 * 24 15 14 42 42 H 1.08990 * 109.44985 * 330.95059 * 24 15 14 43 43 H 1.08997 * 109.33097 * 63.79791 * 25 10 9 44 44 H 1.09004 * 109.18942 * 304.22682 * 25 10 9 45 45 H 1.07999 * 120.00723 * 179.70520 * 26 6 5 46 46 H 1.08001 * 120.00027 * 180.25106 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2788 -0.0005 5 6 4.1504 2.4704 -0.0011 6 6 3.4518 3.6806 -0.0016 7 6 4.1902 4.9596 -0.0016 8 8 5.4060 4.9597 -0.0016 9 7 3.5163 6.1269 -0.0027 10 6 4.2488 7.3956 -0.0021 11 1 5.1743 7.2593 0.5573 12 6 3.4026 8.4431 0.7150 13 6 4.3057 9.5027 1.2968 14 6 4.4886 10.6588 0.2915 15 7 4.6382 10.1677 -1.0925 16 6 3.9818 10.8269 -2.0974 17 1 3.6949 10.2968 -2.9935 18 6 3.6852 12.1764 -1.9642 19 7 4.2927 12.8961 -1.0448 20 14 2.4295 12.9727 -3.0949 21 1 1.0793 12.8704 -2.4853 22 1 2.7768 14.4031 -3.2911 23 1 2.4340 12.2777 -4.4072 24 6 5.4538 9.0231 -1.4316 25 6 4.5891 7.7389 -1.3913 26 6 2.0543 3.6806 0.0042 27 6 1.3665 2.4888 -0.0006 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8668 -0.9353 -0.0004 31 1 4.0022 0.3435 -0.0005 32 1 5.2304 2.4703 -0.0011 33 1 2.5464 6.1268 -0.0030 34 1 2.7138 8.9019 0.0057 35 1 2.8367 7.9674 1.5159 36 1 3.8643 9.8890 2.2155 37 1 5.2790 9.0656 1.5194 38 1 5.3764 11.2304 0.5620 39 1 3.6188 11.3136 0.3426 40 1 4.0852 13.8390 -0.9516 41 1 5.8636 9.1534 -2.4332 42 1 6.2698 8.9338 -0.7147 43 1 3.6722 7.9035 -1.9573 44 1 5.1458 6.9150 -1.8379 45 1 1.5142 4.6158 0.0086 46 1 0.2865 2.4886 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052737596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:57 Heat of formation + Delta-G solvation = 28.793874 kcal Electronic energy + Delta-G solvation = -25698.941087 eV Core-core repulsion = 22168.300104 eV Total energy + Delta-G solvation = -3530.640983 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.37981 -38.97630 -37.50668 -34.82272 -34.49714 -32.57954 -31.64152 -31.28749 -30.33049 -29.32257 -26.12093 -24.73297 -23.83551 -23.03946 -22.94902 -20.85032 -20.15253 -19.85985 -19.22606 -17.95621 -16.77233 -16.53585 -15.83022 -15.20913 -15.20304 -14.96893 -14.75029 -14.33371 -13.99552 -13.67943 -13.57486 -13.50702 -13.35291 -13.07986 -12.73082 -12.54666 -12.45450 -11.94140 -11.63690 -11.39735 -11.24167 -11.19435 -10.84141 -10.73271 -10.66465 -10.44333 -10.25450 -10.09246 -9.91890 -9.74951 -9.65426 -9.56113 -9.29580 -8.85337 -8.52348 -8.38512 -6.63106 -5.76324 -3.20761 0.30450 1.12100 1.95246 3.01464 3.30153 3.37465 3.44885 3.45900 3.77908 4.32854 4.39833 4.51340 4.59898 4.75002 4.85634 5.03986 5.11435 5.20022 5.35292 5.36063 5.47413 5.51393 5.63702 5.70936 5.74700 5.88027 5.94988 6.03811 6.07804 6.10480 6.17415 6.24184 6.34613 6.38193 6.48882 6.51893 6.59509 6.67747 6.77266 6.84241 6.85753 6.93994 7.07368 7.43905 7.67355 7.72044 7.84668 8.34537 8.49856 9.26437 9.93233 10.39288 11.30895 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.002692 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.008092 B =10400.356523 C =10994.976513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.122 4.122 3 C -0.041 4.041 4 C -0.118 4.118 5 C -0.060 4.060 6 C -0.129 4.129 7 C 0.552 3.448 8 O -0.540 6.540 9 N -0.721 5.721 10 C 0.161 3.839 11 H 0.076 0.924 12 C -0.111 4.111 13 C -0.141 4.141 14 C 0.178 3.822 15 N -0.590 5.590 16 C -0.258 4.258 17 H 0.064 0.936 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.900 3.100 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.162 3.838 25 C -0.154 4.154 26 C -0.084 4.084 27 C -0.123 4.123 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.138 0.862 33 H 0.394 0.606 34 H 0.081 0.919 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.048 0.952 38 H 0.026 0.974 39 H 0.072 0.928 40 H 0.253 0.747 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.062 0.938 44 H 0.052 0.948 45 H 0.129 0.871 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 -22.692 4.729 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 C -0.042 4.042 4 C -0.136 4.136 5 C -0.079 4.079 6 C -0.132 4.132 7 C 0.339 3.661 8 O -0.418 6.418 9 N -0.372 5.372 10 C 0.058 3.942 11 H 0.094 0.906 12 C -0.150 4.150 13 C -0.180 4.180 14 C 0.053 3.947 15 N -0.312 5.312 16 C -0.388 4.388 17 H 0.082 0.918 18 C -0.194 4.194 19 N -0.547 5.547 20 Si 0.730 3.270 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.205 1.205 24 C 0.034 3.966 25 C -0.195 4.195 26 C -0.103 4.103 27 C -0.141 4.141 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.229 0.771 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.081 0.919 44 H 0.071 0.929 45 H 0.146 0.854 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.195 -22.453 4.782 23.778 hybrid contribution -1.248 0.441 -0.580 1.445 sum -7.443 -22.012 4.202 23.613 Atomic orbital electron populations 1.24466 0.95684 1.02475 0.98403 1.21842 0.95273 0.95758 1.01120 1.19310 0.93435 0.93235 0.98178 1.21237 0.93146 0.98195 1.01013 1.21236 1.00956 0.90733 0.94972 1.20171 0.93680 0.94083 1.05238 1.18232 0.87358 0.83789 0.76734 1.90770 1.13355 1.87580 1.50113 1.46441 1.10231 1.06235 1.74259 1.20070 0.95272 0.80882 0.97955 0.90634 1.21243 0.98804 0.95740 0.99173 1.22029 0.98242 0.98245 0.99493 1.21078 1.01037 0.91153 0.81450 1.43681 1.53526 1.30987 1.02967 1.19205 1.30134 0.90789 0.98622 0.91788 1.25049 0.99781 0.96034 0.98535 1.70071 1.41790 1.06536 1.36340 0.86336 0.81588 0.78554 0.80545 1.21540 1.21823 1.20490 1.20568 0.91369 0.86106 0.98601 1.21871 1.01981 1.00260 0.95416 1.21265 0.93098 0.98501 0.97420 1.21217 1.00097 0.91488 1.01290 0.87610 0.87868 0.86197 0.85208 0.84436 0.77105 0.90077 0.93183 0.92536 0.93367 0.95575 0.90947 0.93711 0.93301 0.94777 0.91949 0.92897 0.85362 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 14.15 28.84 0.41 -0.58 16 2 C -0.12 -0.84 9.90 -37.62 -0.37 -1.21 16 3 C -0.04 -0.37 5.87 -104.94 -0.62 -0.98 16 4 C -0.12 -1.09 9.76 -39.26 -0.38 -1.47 16 5 C -0.06 -0.68 9.57 -39.25 -0.38 -1.06 16 6 C -0.13 -1.59 5.88 -104.91 -0.62 -2.21 16 7 C 0.55 8.44 7.61 -12.40 -0.09 8.34 16 8 O -0.54 -10.15 15.82 5.30 0.08 -10.07 16 9 N -0.72 -10.29 4.83 -57.82 -0.28 -10.56 16 10 C 0.16 2.72 1.95 -70.99 -0.14 2.58 16 11 H 0.08 1.41 6.65 -51.93 -0.35 1.07 16 12 C -0.11 -1.87 5.00 -28.01 -0.14 -2.01 16 13 C -0.14 -2.59 5.71 -27.11 -0.15 -2.74 16 14 C 0.18 4.14 4.70 -2.76 -0.01 4.13 16 15 N -0.59 -14.35 2.26 -171.87 -0.39 -14.74 16 16 C -0.26 -6.89 9.43 -15.06 -0.14 -7.04 16 17 H 0.06 1.71 7.88 -52.48 -0.41 1.29 16 18 C 0.00 0.13 4.85 -17.43 -0.08 0.04 16 19 N -0.90 -25.87 11.11 55.49 0.62 -25.25 16 20 Si 0.90 21.46 29.58 -169.99 -5.03 16.44 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.16 3.48 5.65 -4.08 -0.02 3.45 16 25 C -0.15 -2.87 5.20 -28.58 -0.15 -3.02 16 26 C -0.08 -0.84 9.52 -39.25 -0.37 -1.21 16 27 C -0.12 -1.08 9.38 -39.26 -0.37 -1.45 16 28 H 0.11 0.44 8.06 -52.49 -0.42 0.01 16 29 H 0.10 0.54 6.02 -52.49 -0.32 0.22 16 30 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 31 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 32 H 0.14 1.58 7.64 -52.48 -0.40 1.18 16 33 H 0.39 4.55 6.63 -40.82 -0.27 4.28 16 34 H 0.08 1.53 7.49 -51.93 -0.39 1.14 16 35 H 0.05 0.72 8.05 -51.93 -0.42 0.30 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.05 0.87 7.31 -51.93 -0.38 0.49 16 38 H 0.03 0.67 8.02 -51.93 -0.42 0.25 16 39 H 0.07 1.87 6.42 -51.93 -0.33 1.53 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.05 1.07 7.99 -51.93 -0.41 0.66 16 42 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 0.99 7.93 -51.93 -0.41 0.58 16 45 H 0.13 1.03 6.38 -52.49 -0.34 0.69 16 46 H 0.13 0.85 6.15 -52.49 -0.32 0.53 16 LS Contribution 366.44 15.07 5.52 5.52 Total: -1.00 -31.22 366.44 -9.95 -41.16 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -6.83 Total: 3.93 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -3.64 Total: -6.43 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: -0.05 Total: -50.55 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.08 Total: -10.07 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.22 -9.95 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052737596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.958 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds