Wall clock time and date at job start Fri Apr 10 2020 23:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32687 * 1 3 3 C 1.47664 * 119.99839 * 2 1 4 4 C 1.39717 * 119.99545 * 180.02562 * 3 2 1 5 5 C 1.37598 * 120.00051 * 179.97438 * 4 3 2 6 6 C 1.39740 * 120.00131 * 359.97438 * 5 4 3 7 7 C 1.47687 * 120.00616 * 179.97438 * 6 5 4 8 8 O 1.21578 * 120.00052 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00346 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00296 * 179.97438 * 9 7 6 11 11 H 1.08998 * 108.44971 * 327.31746 * 10 9 7 12 12 C 1.52566 * 108.51217 * 209.77021 * 10 9 7 13 13 C 1.50887 * 109.35682 * 153.73686 * 12 10 9 14 14 C 1.54296 * 110.23551 * 91.79835 * 13 12 10 15 15 N 1.47609 * 111.93994 * 319.69821 * 14 13 12 16 16 C 1.36938 * 118.64087 * 137.78219 * 15 14 13 17 17 H 1.08003 * 120.00042 * 207.41798 * 16 15 14 18 18 C 1.38818 * 120.00037 * 27.41453 * 16 15 14 19 19 N 1.31611 * 119.99878 * 16.08903 * 18 16 15 20 20 Si 1.86795 * 119.99805 * 195.81406 * 18 16 15 21 21 H 1.48501 * 109.47440 * 89.99968 * 20 18 16 22 22 H 1.48500 * 109.47390 * 209.99889 * 20 18 16 23 23 H 1.48500 * 109.47421 * 330.00028 * 20 18 16 24 24 C 1.44575 * 122.71569 * 317.49671 * 15 14 13 25 25 C 1.47093 * 108.50871 * 85.00349 * 10 9 7 26 26 C 1.39746 * 119.99346 * 0.27674 * 6 5 4 27 27 C 1.37603 * 119.99234 * 359.46545 * 26 6 5 28 28 H 1.07993 * 119.99941 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99918 * 0.02562 * 1 2 3 30 30 H 1.07997 * 119.99864 * 180.02562 * 2 1 3 31 31 H 1.07995 * 119.99833 * 359.97438 * 4 3 2 32 32 H 1.08005 * 119.99933 * 179.97438 * 5 4 3 33 33 H 0.96997 * 119.99650 * 0.02562 * 9 7 6 34 34 H 1.08999 * 109.49032 * 273.69659 * 12 10 9 35 35 H 1.08995 * 109.49144 * 33.75113 * 12 10 9 36 36 H 1.08998 * 109.36397 * 212.07589 * 13 12 10 37 37 H 1.08993 * 109.36441 * 331.82100 * 13 12 10 38 38 H 1.09002 * 109.13865 * 199.01785 * 14 13 12 39 39 H 1.08993 * 108.96357 * 80.26469 * 14 13 12 40 40 H 0.97002 * 119.99651 * 180.02562 * 19 18 16 41 41 H 1.09004 * 109.45362 * 211.02501 * 24 15 14 42 42 H 1.08990 * 109.44985 * 330.95059 * 24 15 14 43 43 H 1.08997 * 109.33097 * 63.79791 * 25 10 9 44 44 H 1.09004 * 109.18942 * 304.22682 * 25 10 9 45 45 H 1.07999 * 120.00723 * 179.70520 * 26 6 5 46 46 H 1.08001 * 120.00027 * 180.25106 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3269 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 3.4623 1.2788 -0.0005 5 6 4.1504 2.4704 -0.0011 6 6 3.4518 3.6806 -0.0016 7 6 4.1902 4.9596 -0.0016 8 8 5.4060 4.9597 -0.0016 9 7 3.5163 6.1269 -0.0027 10 6 4.2488 7.3956 -0.0021 11 1 5.1743 7.2593 0.5573 12 6 3.4026 8.4431 0.7150 13 6 4.3057 9.5027 1.2968 14 6 4.4886 10.6588 0.2915 15 7 4.6382 10.1677 -1.0925 16 6 3.9818 10.8269 -2.0974 17 1 3.6949 10.2968 -2.9935 18 6 3.6852 12.1764 -1.9642 19 7 4.2927 12.8961 -1.0448 20 14 2.4295 12.9727 -3.0949 21 1 1.0793 12.8704 -2.4853 22 1 2.7768 14.4031 -3.2911 23 1 2.4340 12.2777 -4.4072 24 6 5.4538 9.0231 -1.4316 25 6 4.5891 7.7389 -1.3913 26 6 2.0543 3.6806 0.0042 27 6 1.3665 2.4888 -0.0006 28 1 -0.5400 -0.9352 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8668 -0.9353 -0.0004 31 1 4.0022 0.3435 -0.0005 32 1 5.2304 2.4703 -0.0011 33 1 2.5464 6.1268 -0.0030 34 1 2.7138 8.9019 0.0057 35 1 2.8367 7.9674 1.5159 36 1 3.8643 9.8890 2.2155 37 1 5.2790 9.0656 1.5194 38 1 5.3764 11.2304 0.5620 39 1 3.6188 11.3136 0.3426 40 1 4.0852 13.8390 -0.9516 41 1 5.8636 9.1534 -2.4332 42 1 6.2698 8.9338 -0.7147 43 1 3.6722 7.9035 -1.9573 44 1 5.1458 6.9150 -1.8379 45 1 1.5142 4.6158 0.0086 46 1 0.2865 2.4886 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052737596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:56 Heat of formation + Delta-G solvation = 11.912252 kcal Electronic energy + Delta-G solvation = -25699.673129 eV Core-core repulsion = 22168.300104 eV Total energy + Delta-G solvation = -3531.373025 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.47754 -40.00062 -38.94090 -36.42471 -35.16375 -34.13865 -33.31849 -32.34850 -31.56866 -30.30515 -27.89596 -25.98634 -25.43786 -24.45998 -23.67532 -21.90322 -21.57736 -21.02622 -20.51549 -18.99065 -18.55601 -17.59452 -17.00949 -16.86744 -16.08183 -16.05274 -15.90682 -15.69468 -15.36901 -15.24111 -15.02606 -14.50337 -14.28753 -14.15452 -14.10883 -13.76996 -13.60175 -13.22038 -13.14562 -13.02284 -12.71293 -12.41924 -12.25077 -12.13194 -12.04892 -11.82132 -11.74424 -11.54915 -11.51520 -11.35349 -11.31276 -10.95451 -10.44931 -10.14004 -10.02101 -9.20053 -8.64182 -7.83722 -5.31329 -0.43909 0.40169 1.29956 1.48013 1.48946 1.57797 2.08425 2.15024 2.53271 2.96709 3.29582 3.60862 3.66785 3.74167 3.80936 3.90651 3.95576 4.10441 4.29841 4.34288 4.35326 4.43476 4.44098 4.47006 4.66902 4.74301 4.77442 4.93855 4.94892 4.98244 5.03256 5.11357 5.13836 5.22821 5.24866 5.31114 5.34149 5.36761 5.48179 5.54047 5.58185 5.66409 5.69611 5.81412 5.81887 5.92070 6.42854 6.55448 7.20146 7.20723 7.95294 8.35916 9.21351 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021887 B = 0.002692 C = 0.002546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.008092 B =10400.356523 C =10994.976513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.144 4.144 3 C -0.036 4.036 4 C -0.122 4.122 5 C -0.073 4.073 6 C -0.156 4.156 7 C 0.551 3.449 8 O -0.584 6.584 9 N -0.711 5.711 10 C 0.168 3.832 11 H 0.060 0.940 12 C -0.101 4.101 13 C -0.129 4.129 14 C 0.187 3.813 15 N -0.601 5.601 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.047 4.047 19 N -0.935 5.935 20 Si 0.964 3.036 21 H -0.282 1.282 22 H -0.298 1.298 23 H -0.272 1.272 24 C 0.160 3.840 25 C -0.135 4.135 26 C -0.080 4.080 27 C -0.128 4.128 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.151 0.849 32 H 0.125 0.875 33 H 0.410 0.590 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.052 0.948 38 H -0.007 1.007 39 H 0.044 0.956 40 H 0.249 0.751 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.147 0.853 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.911 -25.218 4.967 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.036 4.036 4 C -0.140 4.140 5 C -0.092 4.092 6 C -0.159 4.159 7 C 0.341 3.659 8 O -0.466 6.466 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.078 0.922 12 C -0.139 4.139 13 C -0.169 4.169 14 C 0.062 3.938 15 N -0.323 5.323 16 C -0.393 4.393 17 H 0.081 0.919 18 C -0.242 4.242 19 N -0.581 5.581 20 Si 0.792 3.208 21 H -0.209 1.209 22 H -0.225 1.225 23 H -0.196 1.196 24 C 0.032 3.968 25 C -0.176 4.176 26 C -0.099 4.099 27 C -0.146 4.146 28 H 0.142 0.858 29 H 0.127 0.873 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.143 0.857 33 H 0.248 0.752 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.011 0.989 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.165 0.835 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.048 -25.018 5.017 27.073 hybrid contribution -0.395 1.098 -0.668 1.344 sum -9.443 -23.920 4.349 26.082 Atomic orbital electron populations 1.24763 0.95358 1.03736 0.95453 1.21946 0.95826 0.95329 1.03099 1.19664 0.93408 0.94401 0.96146 1.21455 0.93714 0.98166 1.00688 1.21276 1.00639 0.91523 0.95791 1.19992 0.94698 0.92610 1.08563 1.18715 0.86986 0.84792 0.75455 1.90740 1.15357 1.88223 1.52252 1.46191 1.10908 1.05080 1.73978 1.19766 0.95208 0.82210 0.96397 0.92162 1.21127 0.98081 0.95031 0.99638 1.21885 0.99281 0.96892 0.98806 1.20876 0.98173 0.92518 0.82227 1.43856 1.53928 1.31446 1.03075 1.19462 1.29758 0.91067 0.99055 0.91902 1.25767 1.01639 0.96575 1.00229 1.70231 1.43283 1.06450 1.38119 0.85323 0.79331 0.77047 0.79060 1.20894 1.22462 1.19648 1.20643 0.91713 0.86513 0.97939 1.21606 1.00875 0.98340 0.96748 1.21456 0.91989 0.99957 0.96455 1.21545 1.01431 0.90942 1.00673 0.85776 0.87261 0.84857 0.83118 0.85689 0.75234 0.91789 0.89757 0.90289 0.92943 0.98899 0.93716 0.94202 0.94406 0.94675 0.92487 0.93104 0.83547 0.82626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.16 14.15 66.65 0.94 -0.22 16 2 C -0.14 -1.50 9.90 23.59 0.23 -1.27 16 3 C -0.04 -0.54 5.87 -20.07 -0.12 -0.66 16 4 C -0.12 -2.07 9.76 22.48 0.22 -1.85 16 5 C -0.07 -1.65 9.57 22.48 0.22 -1.44 16 6 C -0.16 -3.73 5.88 -20.05 -0.12 -3.85 16 7 C 0.55 16.73 7.61 86.74 0.66 17.39 16 8 O -0.58 -22.49 15.82 -3.96 -0.06 -22.56 16 9 N -0.71 -19.37 4.83 -455.10 -2.20 -21.57 16 10 C 0.17 5.56 1.95 43.01 0.08 5.64 16 11 H 0.06 2.23 6.65 -2.39 -0.02 2.22 16 12 C -0.10 -3.22 5.00 29.76 0.15 -3.07 16 13 C -0.13 -4.67 5.71 30.35 0.17 -4.50 16 14 C 0.19 8.94 4.70 86.61 0.41 9.35 16 15 N -0.60 -29.86 2.26 -697.68 -1.58 -31.44 16 16 C -0.26 -14.28 9.43 84.03 0.79 -13.49 16 17 H 0.06 3.37 7.88 -2.91 -0.02 3.35 16 18 C -0.05 -2.58 4.85 84.86 0.41 -2.17 16 19 N -0.93 -55.02 11.11 21.65 0.24 -54.78 16 20 Si 0.96 44.55 29.58 68.60 2.03 46.58 16 21 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 22 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 24 C 0.16 6.99 5.65 87.38 0.49 7.48 16 25 C -0.13 -5.03 5.20 29.40 0.15 -4.87 16 26 C -0.08 -1.41 9.52 22.48 0.21 -1.20 16 27 C -0.13 -1.87 9.38 22.48 0.21 -1.66 16 28 H 0.12 0.49 8.06 -2.91 -0.02 0.47 16 29 H 0.11 0.67 6.02 -2.91 -0.02 0.65 16 30 H 0.13 0.99 8.06 -2.91 -0.02 0.97 16 31 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 32 H 0.13 3.02 7.64 -2.91 -0.02 3.00 16 33 H 0.41 8.52 6.63 -92.71 -0.61 7.91 16 34 H 0.06 2.32 7.49 -2.39 -0.02 2.30 16 35 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 36 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 37 H 0.05 1.86 7.31 -2.39 -0.02 1.84 16 38 H -0.01 -0.38 8.02 -2.39 -0.02 -0.40 16 39 H 0.04 2.37 6.42 -2.39 -0.02 2.35 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.04 1.70 7.99 -2.39 -0.02 1.68 16 42 H 0.03 1.51 8.06 -2.39 -0.02 1.49 16 43 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 45 H 0.15 1.91 6.38 -2.91 -0.02 1.89 16 46 H 0.16 1.40 6.15 -2.91 -0.02 1.38 16 Total: -1.00 -69.69 366.44 3.92 -65.76 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.37 Total: 18.39 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.12 Total: -0.38 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -3.53 Total: -107.79 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: -0.06 Total: -22.56 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -69.69 3.92 -65.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052737596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.677 kcal (2) G-P(sol) polarization free energy of solvation -69.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds