Wall clock time and date at job start Fri Apr 10 2020 23:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 115.56426 * 2 1 4 4 C 1.53003 * 117.49676 * 214.30879 * 2 1 3 5 5 C 1.52998 * 117.49390 * 145.68830 * 2 1 3 6 6 H 1.09002 * 117.52178 * 0.02562 * 5 2 1 7 7 C 1.50703 * 117.49699 * 214.97698 * 5 2 1 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 5 2 9 9 N 1.34779 * 119.99944 * 179.97438 * 7 5 2 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.38250 * 120.02188 * 269.72005 * 11 10 9 13 13 C 1.38151 * 119.96416 * 179.78655 * 12 11 10 14 14 C 1.38440 * 120.10007 * 0.45083 * 13 12 11 15 15 C 1.38073 * 119.93638 * 359.80669 * 14 13 12 16 16 C 1.38147 * 120.01790 * 89.99935 * 11 10 9 17 17 C 1.50768 * 108.86187 * 180.02562 * 15 14 13 18 18 N 1.46635 * 107.70717 * 359.97438 * 17 15 14 19 19 C 1.36935 * 126.56845 * 179.97438 * 18 17 15 20 20 H 1.07993 * 119.99877 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00005 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00330 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46898 * 59.99765 * 23 21 19 25 25 H 1.48497 * 109.47121 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46958 * 299.99933 * 23 21 19 27 27 C 1.46643 * 106.86918 * 0.02562 * 18 17 15 28 28 H 1.09003 * 109.47190 * 274.31681 * 1 2 3 29 29 H 1.09008 * 109.46770 * 34.31137 * 1 2 3 30 30 H 1.08998 * 109.47240 * 154.31185 * 1 2 3 31 31 H 1.08992 * 109.46990 * 205.69101 * 3 2 1 32 32 H 1.09007 * 109.47158 * 325.69043 * 3 2 1 33 33 H 1.09000 * 109.46950 * 85.68319 * 3 2 1 34 34 H 1.08997 * 117.49543 * 145.02311 * 4 2 1 35 35 H 1.08998 * 117.49374 * 0.02562 * 4 2 1 36 36 H 0.97000 * 119.99708 * 359.97438 * 9 7 5 37 37 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 38 38 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 39 39 H 1.08002 * 120.01861 * 0.02962 * 12 11 10 40 40 H 1.07996 * 119.94396 * 180.23088 * 13 12 11 41 41 H 1.08001 * 119.94856 * 359.97438 * 16 11 10 42 42 H 1.08994 * 109.81798 * 119.54825 * 17 15 14 43 43 H 1.09006 * 109.80957 * 240.45004 * 17 15 14 44 44 H 0.96999 * 120.00485 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.80993 * 119.54477 * 27 18 17 46 46 H 1.09002 * 109.81097 * 240.37917 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1903 1.3802 0.0000 4 6 2.2365 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6114 -1.8589 1.2681 7 6 3.5292 -0.7812 1.4609 8 8 3.9720 0.3463 1.4008 9 7 4.1934 -1.7302 2.1499 10 6 5.4499 -1.3997 2.8268 11 6 5.9852 -2.6266 3.5192 12 6 5.6264 -2.8947 4.8271 13 6 6.1144 -4.0220 5.4592 14 6 6.9698 -4.8790 4.7879 15 6 7.3324 -4.6084 3.4834 16 6 6.8395 -3.4809 2.8491 17 6 8.2614 -5.6933 3.0007 18 7 8.4430 -6.6466 4.1000 19 6 9.2116 -7.7798 4.0785 20 1 9.7600 -8.0434 3.1864 21 6 9.2856 -8.5896 5.2035 22 7 8.6176 -8.2680 6.2910 23 14 10.3346 -10.1350 5.1745 24 1 11.7478 -9.7689 4.9022 25 1 10.2454 -10.8185 6.4898 26 1 9.8450 -11.0456 4.1086 27 6 7.6431 -6.1548 5.2263 28 1 -0.3634 0.0774 1.0248 29 1 -0.3633 0.8489 -0.5793 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3083 -0.4455 32 1 1.5813 2.0743 -0.5793 33 1 2.2773 1.7413 1.0248 34 1 3.1715 -0.8752 -1.2682 35 1 1.6111 -1.8582 -1.2685 36 1 3.8390 -2.6319 2.1982 37 1 5.2707 -0.6164 3.5633 38 1 6.1764 -1.0497 2.0935 39 1 4.9619 -2.2253 5.3531 40 1 5.8309 -4.2332 6.4797 41 1 7.1229 -3.2690 1.8287 42 1 7.8229 -6.1997 2.1409 43 1 9.2230 -5.2605 2.7248 44 1 8.6696 -8.8337 7.0773 45 1 6.8908 -6.8959 5.4965 46 1 8.2904 -5.9572 6.0808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054261776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:59 Heat of formation + Delta-G solvation = 38.073809 kcal Electronic energy + Delta-G solvation = -24951.681436 eV Core-core repulsion = 21421.442861 eV Total energy + Delta-G solvation = -3530.238575 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.45902 -39.63952 -37.61720 -36.25274 -34.49627 -32.29906 -31.26590 -30.04634 -29.49226 -27.69319 -27.54823 -26.09795 -24.96583 -23.43160 -22.03929 -20.64731 -20.45022 -20.17754 -19.25937 -17.31919 -17.04381 -16.07942 -15.60842 -15.46809 -14.96365 -14.67901 -14.39010 -14.35040 -14.26646 -14.07463 -13.86610 -13.35591 -13.22762 -13.04004 -12.78277 -12.48235 -12.25035 -12.06025 -11.95162 -11.86247 -11.69146 -11.57789 -11.48844 -11.10612 -10.84493 -10.51608 -10.49530 -10.26230 -10.18297 -10.15949 -9.82464 -9.68547 -9.16322 -8.97059 -8.44386 -8.04497 -6.88760 -5.84432 -3.17916 1.55284 1.71871 2.35589 3.09169 3.35997 3.39819 3.41362 3.49230 4.10066 4.33933 4.38348 4.42578 4.51247 4.70025 4.79830 4.87491 4.97622 5.22802 5.26033 5.29520 5.36238 5.40189 5.40232 5.48367 5.55266 5.60661 5.63216 5.69199 5.73740 5.79290 5.83656 5.92762 5.99726 6.08591 6.23010 6.36225 6.47301 6.51185 6.52608 6.74121 6.76737 7.02492 7.29581 7.31646 7.41581 7.49485 7.65654 8.10258 8.11948 9.08238 9.68113 10.35124 11.29608 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030487 B = 0.002190 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.217188 B =12779.560376 C =13045.605099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.095 4.095 3 C -0.102 4.102 4 C -0.147 4.147 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.541 3.459 8 O -0.539 6.539 9 N -0.721 5.721 10 C 0.171 3.829 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.112 4.112 14 C -0.081 4.081 15 C -0.106 4.106 16 C -0.084 4.084 17 C 0.175 3.825 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.083 0.917 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.919 3.081 24 H -0.283 1.283 25 H -0.289 1.289 26 H -0.283 1.283 27 C 0.205 3.795 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.403 0.597 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.733 15.101 -9.778 23.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.140 0.860 7 C 0.328 3.672 8 O -0.417 6.417 9 N -0.372 5.372 10 C 0.048 3.952 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.107 4.107 16 C -0.103 4.103 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.355 4.355 20 H 0.101 0.899 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.749 3.251 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.210 1.210 27 C 0.081 3.919 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.314 15.720 -9.658 23.351 hybrid contribution 0.409 -1.463 0.256 1.540 sum -13.904 14.257 -9.402 22.022 Atomic orbital electron populations 1.21405 0.91541 1.02233 1.02209 1.21591 0.94663 0.91881 1.01421 1.21348 0.99600 0.92397 1.02584 1.23218 1.03010 1.01368 0.90807 1.22379 0.97820 1.05012 0.95859 0.86023 1.19683 0.84567 0.84702 0.78291 1.90697 1.68670 1.20784 1.61509 1.46155 1.24458 1.13663 1.52904 1.20089 0.84945 0.94445 0.95702 1.19466 1.01377 0.97327 0.95066 1.20822 1.00002 0.97212 0.94179 1.20500 0.98195 0.94328 1.00038 1.21551 0.94508 0.97440 0.94696 1.20723 0.98560 0.95796 0.95619 1.20299 0.97289 0.93438 0.99245 1.19704 0.94744 0.88224 0.92354 1.43952 1.54875 1.24899 1.08995 1.18931 1.20641 0.97183 0.98699 0.89893 1.24845 1.00248 0.99393 0.95873 1.69909 1.44966 1.39149 1.03011 0.86094 0.79863 0.82353 0.76831 1.20989 1.21479 1.20991 1.19744 0.93622 0.87439 0.91109 0.91977 0.91640 0.92260 0.91688 0.93357 0.91419 0.88243 0.87840 0.76259 0.90909 0.90934 0.86353 0.86112 0.86575 0.94611 0.94578 0.93390 0.91790 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.85 37.16 0.37 -0.37 16 2 C -0.09 -0.79 2.70 -154.51 -0.42 -1.21 16 3 C -0.10 -0.98 8.09 37.16 0.30 -0.68 16 4 C -0.15 -1.14 9.53 -26.73 -0.25 -1.39 16 5 C -0.19 -1.66 5.91 -91.77 -0.54 -2.20 16 6 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 7 C 0.54 6.16 7.59 -10.98 -0.08 6.08 16 8 O -0.54 -7.70 13.10 5.56 0.07 -7.62 16 9 N -0.72 -7.62 5.55 -61.47 -0.34 -7.96 16 10 C 0.17 2.00 5.80 -5.19 -0.03 1.97 16 11 C -0.13 -1.77 5.25 -104.65 -0.55 -2.32 16 12 C -0.10 -1.42 9.70 -39.61 -0.38 -1.81 16 13 C -0.11 -1.83 10.05 -39.54 -0.40 -2.23 16 14 C -0.08 -1.60 6.22 -104.57 -0.65 -2.25 16 15 C -0.11 -2.00 6.22 -104.57 -0.65 -2.65 16 16 C -0.08 -1.27 9.70 -39.54 -0.38 -1.65 16 17 C 0.18 3.72 7.25 -5.09 -0.04 3.69 16 18 N -0.60 -15.46 3.41 -175.67 -0.60 -16.06 16 19 C -0.23 -6.25 10.32 -15.06 -0.16 -6.40 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -26.52 10.44 55.49 0.58 -25.95 16 23 Si 0.92 21.64 29.55 -169.99 -5.02 16.61 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 C 0.21 4.99 5.40 -5.08 -0.03 4.97 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.37 7.92 -51.92 -0.41 -0.04 16 30 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 31 H 0.06 0.71 7.01 -51.93 -0.36 0.35 16 32 H 0.05 0.38 7.92 -51.93 -0.41 -0.03 16 33 H 0.07 0.75 7.26 -51.93 -0.38 0.38 16 34 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 35 H 0.10 0.62 8.05 -51.93 -0.42 0.21 16 36 H 0.40 3.73 8.46 -40.82 -0.35 3.39 16 37 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 38 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 46 H 0.06 1.72 7.49 -51.93 -0.39 1.33 16 LS Contribution 375.04 15.07 5.65 5.65 Total: -1.00 -30.82 375.04 -10.93 -41.75 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.28 Total: 2.32 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.99 Total: -8.74 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.36 Total: -49.96 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.07 Total: -7.62 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.82 -10.93 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054261776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.819 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds