Wall clock time and date at job start Fri Apr 10 2020 23:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 115.56426 * 2 1 4 4 C 1.53003 * 117.49676 * 214.30879 * 2 1 3 5 5 C 1.52998 * 117.49390 * 145.68830 * 2 1 3 6 6 H 1.09002 * 117.52178 * 0.02562 * 5 2 1 7 7 C 1.50703 * 117.49699 * 214.97698 * 5 2 1 8 8 O 1.21278 * 119.99985 * 359.97438 * 7 5 2 9 9 N 1.34779 * 119.99944 * 179.97438 * 7 5 2 10 10 C 1.46499 * 119.99872 * 180.02562 * 9 7 5 11 11 C 1.50701 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.38250 * 120.02188 * 269.72005 * 11 10 9 13 13 C 1.38151 * 119.96416 * 179.78655 * 12 11 10 14 14 C 1.38440 * 120.10007 * 0.45083 * 13 12 11 15 15 C 1.38073 * 119.93638 * 359.80669 * 14 13 12 16 16 C 1.38147 * 120.01790 * 89.99935 * 11 10 9 17 17 C 1.50768 * 108.86187 * 180.02562 * 15 14 13 18 18 N 1.46635 * 107.70717 * 359.97438 * 17 15 14 19 19 C 1.36935 * 126.56845 * 179.97438 * 18 17 15 20 20 H 1.07993 * 119.99877 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00005 * 180.02562 * 19 18 17 22 22 N 1.31620 * 120.00330 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00048 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.46898 * 59.99765 * 23 21 19 25 25 H 1.48497 * 109.47121 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46958 * 299.99933 * 23 21 19 27 27 C 1.46643 * 106.86918 * 0.02562 * 18 17 15 28 28 H 1.09003 * 109.47190 * 274.31681 * 1 2 3 29 29 H 1.09008 * 109.46770 * 34.31137 * 1 2 3 30 30 H 1.08998 * 109.47240 * 154.31185 * 1 2 3 31 31 H 1.08992 * 109.46990 * 205.69101 * 3 2 1 32 32 H 1.09007 * 109.47158 * 325.69043 * 3 2 1 33 33 H 1.09000 * 109.46950 * 85.68319 * 3 2 1 34 34 H 1.08997 * 117.49543 * 145.02311 * 4 2 1 35 35 H 1.08998 * 117.49374 * 0.02562 * 4 2 1 36 36 H 0.97000 * 119.99708 * 359.97438 * 9 7 5 37 37 H 1.09002 * 109.47391 * 59.99686 * 10 9 7 38 38 H 1.09001 * 109.46813 * 299.99742 * 10 9 7 39 39 H 1.08002 * 120.01861 * 0.02962 * 12 11 10 40 40 H 1.07996 * 119.94396 * 180.23088 * 13 12 11 41 41 H 1.08001 * 119.94856 * 359.97438 * 16 11 10 42 42 H 1.08994 * 109.81798 * 119.54825 * 17 15 14 43 43 H 1.09006 * 109.80957 * 240.45004 * 17 15 14 44 44 H 0.96999 * 120.00485 * 180.02562 * 22 21 19 45 45 H 1.09000 * 109.80993 * 119.54477 * 27 18 17 46 46 H 1.09002 * 109.81097 * 240.37917 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1903 1.3802 0.0000 4 6 2.2365 -1.1211 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 1.6114 -1.8589 1.2681 7 6 3.5292 -0.7812 1.4609 8 8 3.9720 0.3463 1.4008 9 7 4.1934 -1.7302 2.1499 10 6 5.4499 -1.3997 2.8268 11 6 5.9852 -2.6266 3.5192 12 6 5.6264 -2.8947 4.8271 13 6 6.1144 -4.0220 5.4592 14 6 6.9698 -4.8790 4.7879 15 6 7.3324 -4.6084 3.4834 16 6 6.8395 -3.4809 2.8491 17 6 8.2614 -5.6933 3.0007 18 7 8.4430 -6.6466 4.1000 19 6 9.2116 -7.7798 4.0785 20 1 9.7600 -8.0434 3.1864 21 6 9.2856 -8.5896 5.2035 22 7 8.6176 -8.2680 6.2910 23 14 10.3346 -10.1350 5.1745 24 1 11.7478 -9.7689 4.9022 25 1 10.2454 -10.8185 6.4898 26 1 9.8450 -11.0456 4.1086 27 6 7.6431 -6.1548 5.2263 28 1 -0.3634 0.0774 1.0248 29 1 -0.3633 0.8489 -0.5793 30 1 -0.3633 -0.9261 -0.4455 31 1 3.1824 1.3083 -0.4455 32 1 1.5813 2.0743 -0.5793 33 1 2.2773 1.7413 1.0248 34 1 3.1715 -0.8752 -1.2682 35 1 1.6111 -1.8582 -1.2685 36 1 3.8390 -2.6319 2.1982 37 1 5.2707 -0.6164 3.5633 38 1 6.1764 -1.0497 2.0935 39 1 4.9619 -2.2253 5.3531 40 1 5.8309 -4.2332 6.4797 41 1 7.1229 -3.2690 1.8287 42 1 7.8229 -6.1997 2.1409 43 1 9.2230 -5.2605 2.7248 44 1 8.6696 -8.8337 7.0773 45 1 6.8908 -6.8959 5.4965 46 1 8.2904 -5.9572 6.0808 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054261776.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:02:59 Heat of formation + Delta-G solvation = 20.932336 kcal Electronic energy + Delta-G solvation = -24952.424746 eV Core-core repulsion = 21421.442861 eV Total energy + Delta-G solvation = -3530.981885 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.38664 -40.93028 -38.49430 -37.64522 -35.68531 -34.10311 -32.55712 -31.49188 -30.40328 -28.96695 -28.30638 -27.73038 -26.35644 -24.39156 -23.54068 -22.11772 -21.50567 -21.35096 -20.01123 -19.00938 -18.12444 -17.23655 -16.98831 -16.53287 -16.22057 -16.06515 -15.99250 -15.59601 -15.37804 -14.92519 -14.87663 -14.52154 -14.47741 -14.07864 -13.56102 -13.48523 -13.48262 -13.42163 -13.30860 -13.05706 -13.04597 -12.85221 -12.67110 -12.66304 -12.16276 -12.10146 -11.99263 -11.83627 -11.65351 -11.13855 -10.96509 -10.85702 -10.47124 -10.06624 -9.73676 -9.58492 -8.86270 -7.94268 -5.31439 0.25753 0.43514 1.45288 1.49552 1.53506 1.55821 2.19960 2.44181 2.79602 2.87795 3.27902 3.45037 3.52625 3.68871 3.76147 3.81735 3.88733 3.95759 4.11714 4.20280 4.23166 4.33405 4.49318 4.63405 4.68777 4.74539 4.77196 4.82481 4.85163 4.87324 4.95910 5.02349 5.10679 5.12058 5.14010 5.16253 5.28153 5.30634 5.32022 5.41856 5.44448 5.50693 5.55481 5.57887 5.84936 6.03044 6.08695 6.57917 6.99253 7.27597 7.64210 8.32113 9.18683 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030487 B = 0.002190 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.217188 B =12779.560376 C =13045.605099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.102 4.102 3 C -0.098 4.098 4 C -0.138 4.138 5 C -0.194 4.194 6 H 0.143 0.857 7 C 0.538 3.462 8 O -0.572 6.572 9 N -0.714 5.714 10 C 0.177 3.823 11 C -0.108 4.108 12 C -0.088 4.088 13 C -0.110 4.110 14 C -0.112 4.112 15 C -0.117 4.117 16 C -0.076 4.076 17 C 0.171 3.829 18 N -0.625 5.625 19 C -0.246 4.246 20 H 0.091 0.909 21 C -0.065 4.065 22 N -0.953 5.953 23 Si 0.989 3.011 24 H -0.275 1.275 25 H -0.292 1.292 26 H -0.273 1.273 27 C 0.221 3.779 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.088 0.912 35 H 0.126 0.874 36 H 0.412 0.588 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.154 0.846 40 H 0.131 0.869 41 H 0.139 0.861 42 H 0.043 0.957 43 H 0.040 0.960 44 H 0.251 0.749 45 H 0.025 0.975 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.432 16.262 -11.322 25.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.156 4.156 4 C -0.176 4.176 5 C -0.215 4.215 6 H 0.161 0.839 7 C 0.326 3.674 8 O -0.452 6.452 9 N -0.366 5.366 10 C 0.054 3.946 11 C -0.108 4.108 12 C -0.107 4.107 13 C -0.129 4.129 14 C -0.113 4.113 15 C -0.117 4.117 16 C -0.095 4.095 17 C 0.046 3.954 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.258 4.258 22 N -0.601 5.601 23 Si 0.816 3.184 24 H -0.201 1.201 25 H -0.218 1.218 26 H -0.199 1.199 27 C 0.096 3.904 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.144 0.856 36 H 0.248 0.752 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.172 0.828 40 H 0.149 0.851 41 H 0.157 0.843 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.043 0.957 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -16.022 16.883 -11.231 25.843 hybrid contribution 0.898 -1.679 0.679 2.022 sum -15.124 15.204 -10.552 23.900 Atomic orbital electron populations 1.21407 0.89777 1.03279 1.02566 1.21696 0.95902 0.91026 1.01615 1.21259 0.99052 0.93897 1.01345 1.23288 1.02782 1.01392 0.90090 1.22441 0.96788 1.05872 0.96406 0.83912 1.20145 0.85196 0.84171 0.77924 1.90695 1.69661 1.22176 1.62665 1.46053 1.23917 1.14067 1.52518 1.19993 0.85467 0.93332 0.95838 1.19642 0.99538 0.96876 0.94784 1.21150 0.99176 0.96157 0.94180 1.20685 0.97221 0.94390 1.00577 1.21198 0.97237 0.96899 0.95966 1.20570 0.99121 0.96657 0.95365 1.20488 0.96781 0.92027 1.00195 1.19802 0.95741 0.88455 0.91352 1.44261 1.54799 1.25359 1.10713 1.19367 1.20898 0.98065 0.99083 0.89171 1.25785 1.01774 1.02684 0.95581 1.70147 1.46370 1.40111 1.03425 0.85008 0.78354 0.78423 0.76657 1.20059 1.21843 1.19903 1.19281 0.92106 0.89018 0.89988 0.91897 0.91056 0.90871 0.93625 0.91925 0.93347 0.89342 0.85572 0.75224 0.90252 0.90929 0.82840 0.85091 0.84309 0.93921 0.94197 0.93986 0.95681 0.95861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 9.85 71.98 0.71 -0.39 16 2 C -0.10 -1.47 2.70 -52.18 -0.14 -1.61 16 3 C -0.10 -1.80 8.09 71.98 0.58 -1.21 16 4 C -0.14 -1.78 9.53 30.60 0.29 -1.49 16 5 C -0.19 -2.86 5.91 -11.54 -0.07 -2.93 16 6 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 7 C 0.54 11.02 7.59 87.66 0.67 11.69 16 8 O -0.57 -15.60 13.10 -3.02 -0.04 -15.64 16 9 N -0.71 -12.85 5.55 -466.78 -2.59 -15.44 16 10 C 0.18 3.53 5.80 85.63 0.50 4.03 16 11 C -0.11 -2.53 5.25 -19.88 -0.10 -2.64 16 12 C -0.09 -2.14 9.70 22.25 0.22 -1.92 16 13 C -0.11 -3.48 10.05 22.30 0.22 -3.25 16 14 C -0.11 -4.52 6.22 -19.83 -0.12 -4.64 16 15 C -0.12 -4.32 6.22 -19.83 -0.12 -4.45 16 16 C -0.08 -2.12 9.70 22.30 0.22 -1.91 16 17 C 0.17 7.39 7.25 85.63 0.62 8.01 16 18 N -0.62 -33.57 3.41 -709.71 -2.42 -35.99 16 19 C -0.25 -13.99 10.32 84.03 0.87 -13.13 16 20 H 0.09 4.82 7.83 -2.91 -0.02 4.79 16 21 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 22 N -0.95 -57.49 10.44 21.65 0.23 -57.27 16 23 Si 0.99 45.46 29.55 68.60 2.03 47.49 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.22 11.46 5.40 85.63 0.46 11.92 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.61 7.92 -2.38 -0.02 0.59 16 30 H 0.07 0.52 7.90 -2.39 -0.02 0.50 16 31 H 0.04 0.99 7.01 -2.39 -0.02 0.97 16 32 H 0.06 0.91 7.92 -2.38 -0.02 0.89 16 33 H 0.05 1.06 7.26 -2.39 -0.02 1.04 16 34 H 0.09 1.35 8.05 -2.39 -0.02 1.33 16 35 H 0.13 1.06 8.05 -2.39 -0.02 1.04 16 36 H 0.41 6.15 8.46 -92.71 -0.78 5.36 16 37 H 0.08 1.57 8.08 -2.39 -0.02 1.55 16 38 H 0.07 1.52 8.09 -2.39 -0.02 1.50 16 39 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 40 H 0.13 3.79 8.06 -2.91 -0.02 3.76 16 41 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 42 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.04 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.25 14.65 8.31 -92.71 -0.77 13.87 16 45 H 0.03 1.45 7.49 -2.39 -0.02 1.43 16 46 H 0.02 1.36 7.49 -2.39 -0.02 1.34 16 Total: -1.00 -70.81 375.04 2.65 -68.16 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.19 Total: 15.84 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: 5.26 Total: -7.15 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -4.78 Total: -108.70 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.04 Total: -15.64 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.81 2.65 -68.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054261776.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.091 kcal (2) G-P(sol) polarization free energy of solvation -70.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds