Wall clock time and date at job start Fri Apr 10 2020 23:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 115.54997 * 2 1 4 4 C 1.53070 * 117.51364 * 214.27898 * 2 1 3 5 5 C 1.52999 * 59.98653 * 252.52194 * 4 2 1 6 6 H 1.09000 * 117.49990 * 252.49976 * 5 4 2 7 7 C 1.50699 * 117.49934 * 107.49795 * 5 4 2 8 8 O 1.21281 * 120.00182 * 291.25694 * 7 5 4 9 9 N 1.34777 * 119.99899 * 111.25479 * 7 5 4 10 10 C 1.46506 * 120.00182 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.47315 * 180.02562 * 10 9 7 12 12 C 1.38257 * 120.01412 * 90.00055 * 11 10 9 13 13 C 1.38151 * 119.95813 * 180.02562 * 12 11 10 14 14 C 1.38447 * 120.09963 * 0.02562 * 13 12 11 15 15 C 1.38060 * 119.94046 * 359.97438 * 14 13 12 16 16 C 1.38139 * 120.02149 * 270.02725 * 11 10 9 17 17 C 1.50775 * 108.86195 * 179.97438 * 15 14 13 18 18 N 1.46634 * 107.70035 * 0.02562 * 17 15 14 19 19 C 1.36945 * 126.56164 * 179.97438 * 18 17 15 20 20 H 1.07997 * 119.99756 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99878 * 179.97438 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.46631 * 106.87403 * 0.26220 * 18 17 15 28 28 H 1.08999 * 109.46470 * 274.32863 * 1 2 3 29 29 H 1.08994 * 109.46903 * 34.33109 * 1 2 3 30 30 H 1.08999 * 109.46710 * 154.33294 * 1 2 3 31 31 H 1.09000 * 109.47013 * 205.66700 * 3 2 1 32 32 H 1.09004 * 109.47171 * 325.67334 * 3 2 1 33 33 H 1.09006 * 109.47003 * 85.67018 * 3 2 1 34 34 H 1.09003 * 117.49433 * 145.03537 * 4 2 1 35 35 H 1.09001 * 117.51737 * 359.97438 * 4 2 1 36 36 H 0.96995 * 120.00090 * 0.02562 * 9 7 5 37 37 H 1.09007 * 109.46735 * 60.00090 * 10 9 7 38 38 H 1.09000 * 109.47138 * 300.00735 * 10 9 7 39 39 H 1.07996 * 120.02324 * 0.06179 * 12 11 10 40 40 H 1.07994 * 119.94888 * 180.02562 * 13 12 11 41 41 H 1.08001 * 119.94708 * 359.97438 * 16 11 10 42 42 H 1.09000 * 109.81376 * 240.45018 * 17 15 14 43 43 H 1.09003 * 109.86757 * 119.58328 * 17 15 14 44 44 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.81438 * 119.28769 * 27 18 17 46 46 H 1.09008 * 109.81086 * 240.18985 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2372 -1.1218 -0.7646 5 6 2.2365 -1.1208 0.7654 6 1 3.1714 -0.8747 1.2689 7 6 1.3721 -2.1401 1.4615 8 8 0.1639 -2.0519 1.4032 9 7 1.9416 -3.1499 2.1489 10 6 1.1013 -4.1406 2.8262 11 6 1.9770 -5.1544 3.5164 12 6 2.3804 -4.9449 4.8222 13 6 3.1836 -5.8748 5.4537 14 6 3.5856 -7.0160 4.7808 15 6 3.1828 -7.2251 3.4770 16 6 2.3774 -6.2931 2.8448 17 6 3.7590 -8.5314 2.9923 18 7 4.5421 -9.1078 4.0899 19 6 5.2312 -10.2910 4.0668 20 1 5.2297 -10.8994 3.1744 21 6 5.9314 -10.7084 5.1902 22 7 5.9328 -9.9672 6.2779 23 14 6.8708 -12.3228 5.1589 24 1 7.5293 -12.5378 6.4723 25 1 5.9288 -13.4384 4.8883 26 1 7.9015 -12.2751 4.0909 27 6 4.4404 -8.1782 5.2193 28 1 -0.3632 0.0776 1.0248 29 1 -0.3633 0.8486 -0.5796 30 1 -0.3633 -0.9263 -0.4451 31 1 3.1823 1.3086 -0.4451 32 1 1.5809 2.0742 -0.5795 33 1 2.2766 1.7416 1.0248 34 1 3.1724 -0.8760 -1.2677 35 1 1.6125 -1.8601 -1.2673 36 1 2.9079 -3.2203 2.1958 37 1 0.4705 -4.6438 2.0933 38 1 0.4734 -3.6410 3.5639 39 1 2.0674 -4.0553 5.3483 40 1 3.4983 -5.7112 6.4737 41 1 2.0622 -6.4565 1.8249 42 1 4.4037 -8.3541 2.1314 43 1 2.9535 -9.2120 2.7164 44 1 6.4219 -10.2591 7.0631 45 1 3.9787 -8.6794 6.0700 46 1 5.4328 -7.8206 5.4940 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054261777.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:02 Heat of formation + Delta-G solvation = 38.067702 kcal Electronic energy + Delta-G solvation = -24952.119581 eV Core-core repulsion = 21421.880741 eV Total energy + Delta-G solvation = -3530.238840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.45736 -39.63942 -37.61412 -36.25286 -34.49574 -32.29869 -31.26589 -30.04711 -29.49254 -27.69213 -27.54841 -26.09771 -24.96504 -23.43164 -22.03977 -20.64743 -20.45033 -20.17778 -19.25912 -17.31845 -17.04378 -16.07908 -15.60874 -15.46891 -14.96269 -14.67938 -14.39068 -14.35133 -14.26437 -14.07395 -13.86596 -13.35577 -13.22789 -13.04032 -12.78246 -12.48161 -12.25195 -12.06012 -11.95495 -11.85699 -11.69660 -11.57431 -11.48821 -11.10598 -10.84513 -10.51667 -10.49593 -10.26231 -10.18283 -10.15814 -9.82539 -9.68426 -9.16352 -8.97059 -8.44406 -8.04530 -6.88728 -5.84467 -3.17985 1.55274 1.71835 2.35638 3.09161 3.36000 3.39820 3.41355 3.49067 4.10050 4.33941 4.38334 4.42516 4.51240 4.70032 4.79866 4.87539 4.97654 5.22784 5.26035 5.29485 5.36251 5.40163 5.40218 5.48357 5.55245 5.60693 5.63240 5.69205 5.73761 5.79329 5.83645 5.92770 5.99727 6.08619 6.22994 6.36216 6.47299 6.51214 6.52489 6.74097 6.76711 7.02504 7.29623 7.31628 7.41582 7.49435 7.65561 8.10270 8.11940 9.08241 9.68097 10.35053 11.29567 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.030483 B = 0.002191 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.314246 B =12777.888456 C =13044.012115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.095 4.095 3 C -0.117 4.117 4 C -0.147 4.147 5 C -0.190 4.190 6 H 0.122 0.878 7 C 0.541 3.459 8 O -0.539 6.539 9 N -0.721 5.721 10 C 0.171 3.829 11 C -0.132 4.132 12 C -0.104 4.104 13 C -0.112 4.112 14 C -0.081 4.081 15 C -0.106 4.106 16 C -0.084 4.084 17 C 0.175 3.825 18 N -0.601 5.601 19 C -0.227 4.227 20 H 0.083 0.917 21 C -0.007 4.007 22 N -0.923 5.923 23 Si 0.919 3.081 24 H -0.289 1.289 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.205 3.795 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.403 0.597 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.116 0.884 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.256 0.744 45 H 0.064 0.936 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.273 19.809 -9.748 23.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.096 4.096 3 C -0.174 4.174 4 C -0.184 4.184 5 C -0.211 4.211 6 H 0.140 0.860 7 C 0.328 3.672 8 O -0.417 6.417 9 N -0.372 5.372 10 C 0.048 3.952 11 C -0.132 4.132 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.107 4.107 16 C -0.103 4.103 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.355 4.355 20 H 0.101 0.899 21 C -0.204 4.204 22 N -0.570 5.570 23 Si 0.749 3.251 24 H -0.215 1.215 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.081 3.919 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.237 0.763 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.009 19.701 -9.628 23.344 hybrid contribution 1.137 -1.005 0.256 1.539 sum -6.872 18.696 -9.372 22.013 Atomic orbital electron populations 1.21348 0.90627 1.01368 1.02585 1.21602 0.96009 0.90525 1.01425 1.21403 0.99976 0.93798 1.02209 1.23230 1.02855 1.01506 0.90811 1.22379 1.02000 1.00835 0.95855 0.86025 1.19683 0.88125 0.81147 0.78290 1.90698 1.14529 1.74942 1.61492 1.46156 1.10787 1.27279 1.52959 1.20090 0.91631 0.87753 0.95709 1.19466 1.02305 0.96358 0.95104 1.20823 0.98272 0.98912 0.94214 1.20502 0.98994 0.93548 1.00014 1.21553 0.96035 0.95925 0.94694 1.20721 0.97460 0.96864 0.95649 1.20298 0.97651 0.93087 0.99231 1.19704 0.93817 0.89128 0.92377 1.43953 1.57973 1.21898 1.08896 1.18932 1.23183 0.94572 0.98765 0.89893 1.24845 1.00471 0.99161 0.95885 1.69914 1.46039 1.38009 1.03070 0.86093 0.79561 0.82646 0.76833 1.21480 1.20988 1.20994 1.19742 0.96126 0.85005 0.91022 0.91412 0.93356 0.91695 0.92261 0.91638 0.91977 0.87838 0.88241 0.76261 0.90932 0.90908 0.86353 0.86112 0.86575 0.94595 0.94606 0.93392 0.91805 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 8.09 37.16 0.30 -0.68 16 2 C -0.10 -0.79 2.70 -154.47 -0.42 -1.21 16 3 C -0.12 -0.74 9.85 37.16 0.37 -0.37 16 4 C -0.15 -1.14 9.53 -26.70 -0.25 -1.39 16 5 C -0.19 -1.66 5.91 -91.77 -0.54 -2.20 16 6 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 7 C 0.54 6.16 7.59 -10.99 -0.08 6.08 16 8 O -0.54 -7.70 13.10 5.56 0.07 -7.63 16 9 N -0.72 -7.62 5.55 -61.47 -0.34 -7.96 16 10 C 0.17 2.00 5.80 -5.19 -0.03 1.97 16 11 C -0.13 -1.77 5.25 -104.65 -0.55 -2.31 16 12 C -0.10 -1.42 9.70 -39.61 -0.38 -1.81 16 13 C -0.11 -1.83 10.05 -39.54 -0.40 -2.23 16 14 C -0.08 -1.60 6.22 -104.57 -0.65 -2.25 16 15 C -0.11 -1.99 6.22 -104.57 -0.65 -2.64 16 16 C -0.08 -1.27 9.70 -39.54 -0.38 -1.65 16 17 C 0.18 3.72 7.25 -5.08 -0.04 3.69 16 18 N -0.60 -15.46 3.41 -175.68 -0.60 -16.06 16 19 C -0.23 -6.25 10.32 -15.06 -0.16 -6.40 16 20 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 21 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 22 N -0.92 -26.52 10.45 55.49 0.58 -25.94 16 23 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 C 0.21 5.00 5.39 -5.08 -0.03 4.97 16 28 H 0.07 0.75 7.25 -51.93 -0.38 0.38 16 29 H 0.05 0.38 7.92 -51.93 -0.41 -0.03 16 30 H 0.06 0.71 7.02 -51.93 -0.36 0.35 16 31 H 0.06 0.32 7.90 -51.93 -0.41 -0.09 16 32 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.10 0.62 8.05 -51.93 -0.42 0.21 16 35 H 0.10 0.84 8.05 -51.93 -0.42 0.42 16 36 H 0.40 3.73 8.46 -40.82 -0.35 3.39 16 37 H 0.07 0.88 8.09 -51.93 -0.42 0.46 16 38 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.06 1.70 7.51 -51.93 -0.39 1.31 16 46 H 0.06 1.71 7.47 -51.92 -0.39 1.32 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -30.81 375.06 -10.93 -41.74 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.28 Total: 2.32 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: -3.99 Total: -8.74 kcal Atomic # 7 Polarization: -49.60 SS G_CDS: -0.36 Total: -49.96 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.07 Total: -7.63 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.81 -10.93 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054261777.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.811 kcal (2) G-P(sol) polarization free energy of solvation -30.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds