Wall clock time and date at job start Fri Apr 10 2020 23:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38390 * 119.92803 * 2 1 4 4 C 1.38339 * 120.28786 * 180.27844 * 3 2 1 5 5 C 1.37972 * 120.14863 * 359.72650 * 4 3 2 6 6 C 1.50703 * 120.07140 * 179.97438 * 5 4 3 7 7 C 1.39553 * 119.85131 * 0.02562 * 5 4 3 8 8 C 1.47852 * 120.14303 * 179.97438 * 7 5 4 9 9 O 1.21552 * 120.00100 * 319.70960 * 8 7 5 10 10 N 1.34775 * 120.00153 * 139.70924 * 8 7 5 11 11 C 1.47395 * 135.85162 * 4.59557 * 10 8 7 12 12 C 1.52072 * 87.40856 * 154.38702 * 11 10 8 13 13 C 1.47391 * 135.85803 * 184.96468 * 10 8 7 14 14 C 1.53517 * 117.21201 * 267.27594 * 12 11 10 15 15 C 1.54633 * 102.70445 * 262.93256 * 14 12 11 16 16 N 1.47147 * 107.37826 * 339.38724 * 15 14 12 17 17 C 1.36936 * 125.57910 * 179.10894 * 16 15 14 18 18 H 1.08001 * 119.99506 * 179.97438 * 17 16 15 19 19 C 1.38807 * 120.00124 * 359.97438 * 17 16 15 20 20 N 1.31623 * 119.99884 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00046 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46915 * 59.99870 * 21 19 17 23 23 H 1.48500 * 109.46913 * 179.97438 * 21 19 17 24 24 H 1.48495 * 109.47031 * 299.99863 * 21 19 17 25 25 C 1.47761 * 108.83721 * 359.08347 * 16 15 14 26 26 C 1.37932 * 119.92720 * 179.72580 * 2 1 3 27 27 H 1.09000 * 109.46622 * 270.27920 * 1 2 3 28 28 H 1.09004 * 109.46954 * 30.27149 * 1 2 3 29 29 H 1.08997 * 109.47074 * 150.27177 * 1 2 3 30 30 H 1.07999 * 119.85294 * 359.97438 * 3 2 1 31 31 H 1.08007 * 119.92210 * 179.70052 * 4 3 2 32 32 H 1.09003 * 109.47394 * 273.04975 * 6 5 4 33 33 H 1.08990 * 109.47558 * 33.05472 * 6 5 4 34 34 H 1.09005 * 109.46530 * 153.05569 * 6 5 4 35 35 H 1.08996 * 113.54469 * 268.99930 * 11 10 8 36 36 H 1.08994 * 113.54083 * 39.67544 * 11 10 8 37 37 H 1.09006 * 113.53956 * 320.32352 * 13 10 8 38 38 H 1.08993 * 113.54816 * 90.92933 * 13 10 8 39 39 H 1.08996 * 110.76404 * 21.23942 * 14 12 11 40 40 H 1.09001 * 110.76149 * 144.62913 * 14 12 11 41 41 H 1.09000 * 109.86275 * 98.83703 * 15 14 12 42 42 H 1.08999 * 109.86180 * 219.93132 * 15 14 12 43 43 H 0.96995 * 119.99731 * 179.97438 * 20 19 17 44 44 H 1.08997 * 110.40547 * 263.50598 * 25 16 15 45 45 H 1.09001 * 110.39861 * 141.08068 * 25 16 15 46 46 H 1.07997 * 120.07740 * 359.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1994 0.0000 4 6 3.5808 1.2081 -0.0058 5 6 4.2813 0.0194 -0.0059 6 6 5.7882 0.0309 -0.0129 7 6 3.5911 -1.1936 -0.0007 8 6 4.3352 -2.4712 -0.0014 9 8 5.3321 -2.5936 -0.6861 10 7 3.9082 -3.5001 0.7571 11 6 2.7451 -3.7645 1.6229 12 6 2.9622 -5.2439 1.3459 13 6 4.4044 -4.8482 1.0870 14 6 2.1870 -5.8597 0.1727 15 6 0.9646 -6.4994 0.8712 16 7 1.3155 -6.6851 2.2881 17 6 0.4938 -7.2086 3.2503 18 1 0.8457 -7.3048 4.2669 19 6 -0.7912 -7.6157 2.9192 20 7 -1.2202 -7.4980 1.6805 21 14 -1.9118 -8.3305 4.2318 22 1 -2.1191 -7.3264 5.3061 23 1 -3.2208 -8.6841 3.6261 24 1 -1.2866 -9.5486 4.8066 25 6 2.6998 -6.2148 2.5024 26 6 2.1952 -1.1954 0.0057 27 1 -0.3632 0.0050 1.0277 28 1 -0.3633 0.8876 -0.5181 29 1 -0.3633 -0.8924 -0.5096 30 1 1.6539 2.1326 -0.0004 31 1 4.1137 2.1475 -0.0107 32 1 6.1465 0.0857 -1.0409 33 1 6.1476 0.8963 0.5437 34 1 6.1606 -0.8813 0.4535 35 1 2.9062 -3.4883 2.6649 36 1 1.8078 -3.3780 1.2228 37 1 4.8527 -5.3667 0.2393 38 1 5.0313 -4.8755 1.9782 39 1 1.8709 -5.0879 -0.5291 40 1 2.7859 -6.6190 -0.3302 41 1 0.1020 -5.8385 0.7867 42 1 0.7405 -7.4639 0.4155 43 1 -2.1180 -7.7828 1.4490 44 1 3.3963 -7.0521 2.4612 45 1 2.7817 -5.6979 3.4585 46 1 1.6552 -2.1307 0.0106 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073149998.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:08 Heat of formation + Delta-G solvation = 53.284481 kcal Electronic energy + Delta-G solvation = -26400.486524 eV Core-core repulsion = 22870.907533 eV Total energy + Delta-G solvation = -3529.578991 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.89865 -39.59557 -37.88620 -35.70374 -33.85212 -32.34743 -31.49745 -29.60792 -29.23167 -28.56562 -26.05007 -25.94929 -25.00297 -23.99623 -23.16001 -21.24846 -20.31672 -19.20518 -18.35097 -17.04732 -16.70130 -16.26410 -15.87194 -15.72487 -15.08909 -14.82803 -14.49668 -14.18563 -14.07300 -13.82873 -13.54570 -13.25573 -13.00448 -12.92176 -12.56451 -12.46336 -12.31915 -11.99101 -11.96755 -11.83369 -11.65366 -11.62314 -11.21296 -10.99552 -10.92103 -10.65359 -10.43656 -10.21023 -10.15468 -9.87727 -9.68910 -9.55400 -9.08804 -8.64677 -8.62363 -8.48020 -6.86928 -5.73998 -3.07789 0.88080 1.20956 2.73894 2.93786 3.38681 3.43362 3.44384 3.64340 4.35043 4.46359 4.60971 4.65381 4.69068 4.81410 4.95503 5.03414 5.16321 5.24526 5.37636 5.45298 5.47495 5.52061 5.53754 5.59009 5.61945 5.64173 5.68783 5.73735 5.80831 5.87326 5.89651 5.94484 6.10553 6.15977 6.17051 6.20998 6.40727 6.41107 6.45531 6.49449 6.63803 6.68238 6.79042 7.52252 7.58204 7.78831 7.81405 8.20455 8.22191 9.18682 9.78698 10.44257 11.37469 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016823 B = 0.003557 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.020746 B = 7869.618073 C = 8975.003098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.099 4.099 4 C -0.126 4.126 5 C -0.042 4.042 6 C -0.114 4.114 7 C -0.120 4.120 8 C 0.587 3.413 9 O -0.540 6.540 10 N -0.637 5.637 11 C 0.118 3.882 12 C -0.105 4.105 13 C 0.120 3.880 14 C -0.117 4.117 15 C 0.180 3.820 16 N -0.604 5.604 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.922 5.922 21 Si 0.911 3.089 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.154 3.846 26 C -0.084 4.084 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.253 0.747 44 H 0.027 0.973 45 H 0.042 0.958 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.035 15.954 -2.795 18.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.144 4.144 5 C -0.043 4.043 6 C -0.170 4.170 7 C -0.123 4.123 8 C 0.377 3.623 9 O -0.419 6.419 10 N -0.372 5.372 11 C -0.004 4.004 12 C -0.107 4.107 13 C -0.003 4.003 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.358 4.358 18 H 0.095 0.905 19 C -0.203 4.203 20 N -0.569 5.569 21 Si 0.742 3.258 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.027 3.973 26 C -0.102 4.102 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 8.406 15.969 -3.289 18.344 hybrid contribution -0.725 -0.352 0.698 1.067 sum 7.681 15.617 -2.591 17.595 Atomic orbital electron populations 1.20813 0.90594 1.03044 1.02764 1.19877 0.96476 0.92742 1.00506 1.21180 0.94105 0.97605 0.98794 1.20939 0.94079 0.97301 1.02071 1.19889 0.96446 0.91512 0.96462 1.20847 0.90488 1.02741 1.02956 1.19746 0.93742 0.92785 1.06043 1.17784 0.83512 0.81792 0.79204 1.90758 1.26670 1.82313 1.42131 1.49751 1.26483 1.15295 1.45626 1.23004 0.89035 0.93798 0.94564 1.22190 0.94282 0.94502 0.99717 1.22788 0.96831 0.80272 1.00399 1.22476 0.98591 0.99080 0.95411 1.21220 0.91562 0.98568 0.83102 1.44531 1.09228 1.73503 1.05842 1.19000 0.93343 1.33903 0.89517 0.90452 1.24785 0.97395 1.01499 0.96610 1.69948 1.17862 1.52759 1.16346 0.86212 0.80061 0.78984 0.80566 1.21178 1.21628 1.21183 1.21138 0.88568 0.93574 0.94024 1.21371 0.92691 0.98562 0.97596 0.90816 0.91518 0.91107 0.85750 0.85529 0.90501 0.91883 0.90897 0.89505 0.90007 0.90310 0.89663 0.92180 0.91722 0.93526 0.93791 0.93700 0.95527 0.93933 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.10 -1.08 5.87 -104.68 -0.61 -1.69 16 3 C -0.10 -0.99 9.69 -39.49 -0.38 -1.37 16 4 C -0.13 -1.31 9.70 -39.64 -0.38 -1.70 16 5 C -0.04 -0.53 5.91 -104.23 -0.62 -1.15 16 6 C -0.11 -1.31 9.00 36.01 0.32 -0.99 16 7 C -0.12 -1.71 5.72 -104.97 -0.60 -2.31 16 8 C 0.59 9.48 6.98 -12.33 -0.09 9.40 16 9 O -0.54 -10.05 15.74 5.32 0.08 -9.97 16 10 N -0.64 -9.62 3.68 -186.87 -0.69 -10.31 16 11 C 0.12 1.74 7.10 -7.33 -0.05 1.69 16 12 C -0.11 -1.69 1.06 -155.22 -0.16 -1.86 16 13 C 0.12 1.71 8.03 -7.48 -0.06 1.65 16 14 C -0.12 -2.10 6.41 -25.60 -0.16 -2.26 16 15 C 0.18 4.15 5.39 -2.83 -0.02 4.13 16 16 N -0.60 -14.54 3.41 -170.53 -0.58 -15.12 16 17 C -0.23 -6.12 10.28 -15.06 -0.15 -6.27 16 18 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 19 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 20 N -0.92 -26.21 10.30 55.49 0.57 -25.64 16 21 Si 0.91 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.15 2.90 6.70 -3.22 -0.02 2.87 16 26 C -0.08 -1.10 8.54 -39.19 -0.33 -1.43 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 29 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 30 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 31 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.07 0.97 6.29 -51.93 -0.33 0.65 16 35 H 0.09 1.19 8.06 -51.93 -0.42 0.77 16 36 H 0.08 1.21 5.86 -51.93 -0.30 0.91 16 37 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.06 1.02 8.07 -51.93 -0.42 0.60 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 42 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.77 8.00 -51.93 -0.42 0.35 16 46 H 0.13 1.74 5.82 -52.49 -0.31 1.44 16 LS Contribution 368.24 15.07 5.55 5.55 Total: -1.00 -31.12 368.24 -10.30 -41.42 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -7.15 Total: -0.09 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -3.06 Total: -2.29 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.70 Total: -51.07 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.12 -10.30 -41.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073149998.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.703 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds