Wall clock time and date at job start Fri Apr 10 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38354 * 119.92502 * 2 1 4 4 C 1.38359 * 120.29298 * 179.74247 * 3 2 1 5 5 C 1.50703 * 119.92674 * 179.97438 * 4 3 2 6 6 C 1.37956 * 120.14490 * 0.02562 * 4 3 2 7 7 C 1.39577 * 119.85126 * 359.97332 * 6 4 3 8 8 C 1.47845 * 120.14270 * 180.02562 * 7 6 4 9 9 O 1.21556 * 120.00015 * 6.67361 * 8 7 6 10 10 N 1.34771 * 120.00087 * 186.66199 * 8 7 6 11 11 C 1.47395 * 135.85143 * 5.20156 * 10 8 7 12 12 C 1.52077 * 87.40994 * 154.37969 * 11 10 8 13 13 C 1.47394 * 135.85653 * 185.55752 * 10 8 7 14 14 C 1.53512 * 117.21036 * 267.27683 * 12 11 10 15 15 C 1.54629 * 102.69986 * 262.92937 * 14 12 11 16 16 N 1.47145 * 107.38150 * 339.38845 * 15 14 12 17 17 C 1.36941 * 125.58171 * 179.04322 * 16 15 14 18 18 H 1.07997 * 120.00051 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99760 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00292 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99822 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46584 * 90.00287 * 21 19 17 23 23 H 1.48498 * 109.47367 * 210.00072 * 21 19 17 24 24 H 1.48493 * 109.47257 * 330.00586 * 21 19 17 25 25 C 1.47752 * 108.83808 * 359.08415 * 16 15 14 26 26 C 1.37955 * 119.92659 * 179.71876 * 2 1 3 27 27 H 1.09000 * 109.46936 * 90.00786 * 1 2 3 28 28 H 1.09001 * 109.47111 * 210.00220 * 1 2 3 29 29 H 1.08997 * 109.47625 * 330.00416 * 1 2 3 30 30 H 1.08003 * 119.85635 * 359.72306 * 3 2 1 31 31 H 1.08994 * 109.47526 * 90.00196 * 5 4 3 32 32 H 1.09006 * 109.47058 * 210.00288 * 5 4 3 33 33 H 1.08999 * 109.46969 * 329.99598 * 5 4 3 34 34 H 1.07999 * 120.07212 * 179.97438 * 6 4 3 35 35 H 1.09005 * 113.53797 * 268.98958 * 11 10 8 36 36 H 1.09001 * 113.54452 * 39.66537 * 11 10 8 37 37 H 1.08996 * 113.54373 * 320.33133 * 13 10 8 38 38 H 1.08998 * 113.54100 * 91.00985 * 13 10 8 39 39 H 1.08996 * 110.76287 * 21.22870 * 14 12 11 40 40 H 1.08993 * 110.76158 * 144.62983 * 14 12 11 41 41 H 1.09005 * 109.86757 * 98.83596 * 15 14 12 42 42 H 1.09004 * 109.86569 * 219.93675 * 15 14 12 43 43 H 0.97002 * 120.00214 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.40726 * 263.50486 * 25 16 15 45 45 H 1.09007 * 110.40076 * 141.07933 * 25 16 15 46 46 H 1.07996 * 120.07509 * 0.27887 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1991 0.0000 4 6 3.5808 1.2080 0.0054 5 6 4.3242 2.5189 0.0047 6 6 4.2812 0.0195 0.0102 7 6 3.5910 -1.1937 0.0103 8 6 4.3352 -2.4712 0.0160 9 8 5.5441 -2.4698 0.1431 10 7 3.6732 -3.6373 -0.1193 11 6 2.2792 -4.0378 -0.3818 12 6 2.8324 -5.3303 -0.9616 13 6 4.0269 -5.0671 -0.0630 14 6 3.0926 -5.3663 -2.4741 15 6 1.8156 -6.0440 -3.0227 16 7 1.1941 -6.7776 -1.9088 17 6 0.0313 -7.4974 -1.9791 18 1 -0.3450 -8.0025 -1.1018 19 6 -0.6639 -7.5777 -3.1779 20 7 -0.2051 -6.9625 -4.2472 21 14 -2.2498 -8.5601 -3.2739 22 1 -3.3995 -7.6765 -2.9530 23 1 -2.4123 -9.1052 -4.6456 24 1 -2.1986 -9.6793 -2.2993 25 6 2.0297 -6.6098 -0.7019 26 6 2.1953 -1.1956 0.0059 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6537 2.1323 -0.0045 31 1 4.4995 2.8377 1.0322 32 1 5.2796 2.3945 -0.5051 33 1 3.7314 3.2725 -0.5135 34 1 5.3612 0.0278 0.0140 35 1 1.6903 -4.1838 0.5238 36 1 1.7766 -3.4090 -1.1167 37 1 4.9835 -5.2977 -0.5317 38 1 3.9274 -5.5013 0.9318 39 1 3.1961 -4.3571 -2.8725 40 1 3.9751 -5.9647 -2.7002 41 1 1.1266 -5.2872 -3.3979 42 1 2.0782 -6.7371 -3.8220 43 1 -0.6907 -7.0189 -5.0850 44 1 2.6998 -7.4611 -0.5821 45 1 1.4020 -6.4919 0.1815 46 1 1.6553 -2.1309 0.0059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073151557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:10 Heat of formation + Delta-G solvation = 55.104921 kcal Electronic energy + Delta-G solvation = -26153.911131 eV Core-core repulsion = 22624.411080 eV Total energy + Delta-G solvation = -3529.500051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91776 -39.55257 -37.94473 -35.71483 -33.75948 -32.56352 -32.01294 -29.54626 -28.73111 -27.58845 -26.97799 -26.02352 -25.81131 -24.05917 -22.78833 -20.84231 -20.31542 -19.26288 -18.51696 -16.95008 -16.79477 -16.43832 -15.96848 -15.51052 -15.18077 -14.81725 -14.47347 -14.27490 -13.84359 -13.80954 -13.54785 -13.38544 -13.14079 -12.96528 -12.73049 -12.48804 -12.32992 -12.12612 -11.95393 -11.85703 -11.66239 -11.66015 -11.22224 -10.98229 -10.94517 -10.64683 -10.45105 -10.22062 -10.13108 -9.88396 -9.67471 -9.58707 -8.98101 -8.74326 -8.62811 -8.53667 -6.86977 -5.74088 -3.07992 0.78289 1.20240 2.82135 2.89188 3.37763 3.43261 3.45159 3.74817 4.33145 4.45833 4.54991 4.57587 4.62364 4.93309 4.96785 5.08907 5.12239 5.18284 5.27037 5.34881 5.37574 5.46472 5.49624 5.49781 5.59249 5.61878 5.64520 5.68425 5.74639 5.79163 5.83032 5.92866 6.00156 6.13940 6.21620 6.24461 6.34197 6.39272 6.44000 6.50834 6.63634 6.68064 6.78425 7.52781 7.59040 7.79167 7.80879 8.20996 8.22319 9.18475 9.78572 10.44110 11.37357 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.003371 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.291859 B = 8303.814254 C = 9361.936480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.090 4.090 3 C -0.099 4.099 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.069 4.069 7 C -0.119 4.119 8 C 0.585 3.415 9 O -0.547 6.547 10 N -0.637 5.637 11 C 0.113 3.887 12 C -0.105 4.105 13 C 0.120 3.880 14 C -0.117 4.117 15 C 0.180 3.820 16 N -0.604 5.604 17 C -0.228 4.228 18 H 0.078 0.922 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.154 3.846 26 C -0.100 4.100 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.027 0.973 45 H 0.043 0.957 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.944 15.504 9.114 18.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.090 4.090 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.088 4.088 7 C -0.122 4.122 8 C 0.376 3.624 9 O -0.426 6.426 10 N -0.371 5.371 11 C -0.009 4.009 12 C -0.106 4.106 13 C -0.003 4.003 14 C -0.156 4.156 15 C 0.055 3.945 16 N -0.331 5.331 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.742 3.258 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.027 3.973 26 C -0.118 4.118 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.107 0.893 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.061 0.939 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.541 15.639 9.027 18.888 hybrid contribution -0.912 -0.514 -0.114 1.054 sum 4.628 15.124 8.914 18.156 Atomic orbital electron populations 1.20820 0.90561 1.02992 1.02870 1.19893 0.96469 0.92732 0.99863 1.21105 0.93494 0.97686 0.99465 1.19848 0.93782 0.95250 1.00659 1.20778 1.00078 0.93613 1.02415 1.21102 1.00449 0.90362 0.96923 1.19866 0.93685 0.93175 1.05431 1.17793 0.86338 0.82174 0.76125 1.90745 1.13653 1.86876 1.51318 1.49656 1.12075 1.05275 1.70100 1.23052 0.83774 0.94209 0.99859 1.22206 0.95470 0.96050 0.96919 1.22795 0.99473 0.78242 0.99749 1.22471 1.00723 1.00635 0.91725 1.21226 0.88901 0.94508 0.89863 1.44542 1.24482 1.59209 1.04881 1.19038 0.97146 1.23641 0.95839 0.90399 1.24795 0.99194 1.00597 0.95785 1.69959 1.39596 1.46904 1.00389 0.86135 0.83251 0.79533 0.76917 1.21628 1.21715 1.20712 1.21140 0.92453 0.92196 0.91530 1.21777 0.93204 0.99027 0.97829 0.90715 0.91122 0.91493 0.85786 0.91106 0.91324 0.91443 0.84911 0.89285 0.89595 0.90266 0.89604 0.92094 0.91723 0.93508 0.93776 0.93744 0.95492 0.93923 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.09 -0.99 5.87 -104.68 -0.61 -1.61 16 3 C -0.10 -1.01 9.34 -39.49 -0.37 -1.38 16 4 C -0.10 -1.02 5.87 -104.68 -0.61 -1.63 16 5 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 6 C -0.07 -0.90 9.24 -39.19 -0.36 -1.26 16 7 C -0.12 -1.70 5.87 -104.97 -0.62 -2.32 16 8 C 0.58 9.67 8.01 -12.33 -0.10 9.57 16 9 O -0.55 -10.55 17.14 5.32 0.09 -10.46 16 10 N -0.64 -9.70 3.68 -186.82 -0.69 -10.38 16 11 C 0.11 1.63 5.43 -7.32 -0.04 1.59 16 12 C -0.10 -1.69 1.06 -155.22 -0.16 -1.85 16 13 C 0.12 1.72 8.03 -7.47 -0.06 1.66 16 14 C -0.12 -2.12 6.41 -25.61 -0.16 -2.29 16 15 C 0.18 4.16 5.39 -2.83 -0.02 4.15 16 16 N -0.60 -14.51 3.41 -170.53 -0.58 -15.09 16 17 C -0.23 -6.07 10.28 -15.06 -0.15 -6.23 16 18 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 19 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.27 10.30 55.49 0.57 -25.70 16 21 Si 0.91 21.46 29.55 -169.99 -5.02 16.44 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.15 2.88 6.70 -3.22 -0.02 2.85 16 26 C -0.10 -1.28 8.80 -39.19 -0.34 -1.63 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 30 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 33 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 34 H 0.13 1.71 7.67 -52.49 -0.40 1.30 16 35 H 0.09 1.14 8.04 -51.93 -0.42 0.72 16 36 H 0.09 1.27 6.84 -51.93 -0.35 0.92 16 37 H 0.08 1.15 8.13 -51.93 -0.42 0.73 16 38 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 1.20 7.38 -51.93 -0.38 0.82 16 42 H 0.04 1.15 7.49 -51.93 -0.39 0.76 16 43 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 46 H 0.14 1.72 4.18 -52.49 -0.22 1.50 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -31.61 370.25 -10.25 -41.86 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.18 Total: -0.42 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.02 Total: -1.83 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: -0.70 Total: -51.17 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.61 -10.25 -41.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073151557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.965 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds