Wall clock time and date at job start Fri Apr 10 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38354 * 119.92502 * 2 1 4 4 C 1.38359 * 120.29298 * 179.74247 * 3 2 1 5 5 C 1.50703 * 119.92674 * 179.97438 * 4 3 2 6 6 C 1.37956 * 120.14490 * 0.02562 * 4 3 2 7 7 C 1.39577 * 119.85126 * 359.97332 * 6 4 3 8 8 C 1.47845 * 120.14270 * 180.02562 * 7 6 4 9 9 O 1.21556 * 120.00015 * 6.67361 * 8 7 6 10 10 N 1.34771 * 120.00087 * 186.66199 * 8 7 6 11 11 C 1.47395 * 135.85143 * 5.20156 * 10 8 7 12 12 C 1.52077 * 87.40994 * 154.37969 * 11 10 8 13 13 C 1.47394 * 135.85653 * 185.55752 * 10 8 7 14 14 C 1.53512 * 117.21036 * 267.27683 * 12 11 10 15 15 C 1.54629 * 102.69986 * 262.92937 * 14 12 11 16 16 N 1.47145 * 107.38150 * 339.38845 * 15 14 12 17 17 C 1.36941 * 125.58171 * 179.04322 * 16 15 14 18 18 H 1.07997 * 120.00051 * 180.02562 * 17 16 15 19 19 C 1.38811 * 119.99760 * 0.02562 * 17 16 15 20 20 N 1.31616 * 120.00292 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99822 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46584 * 90.00287 * 21 19 17 23 23 H 1.48498 * 109.47367 * 210.00072 * 21 19 17 24 24 H 1.48493 * 109.47257 * 330.00586 * 21 19 17 25 25 C 1.47752 * 108.83808 * 359.08415 * 16 15 14 26 26 C 1.37955 * 119.92659 * 179.71876 * 2 1 3 27 27 H 1.09000 * 109.46936 * 90.00786 * 1 2 3 28 28 H 1.09001 * 109.47111 * 210.00220 * 1 2 3 29 29 H 1.08997 * 109.47625 * 330.00416 * 1 2 3 30 30 H 1.08003 * 119.85635 * 359.72306 * 3 2 1 31 31 H 1.08994 * 109.47526 * 90.00196 * 5 4 3 32 32 H 1.09006 * 109.47058 * 210.00288 * 5 4 3 33 33 H 1.08999 * 109.46969 * 329.99598 * 5 4 3 34 34 H 1.07999 * 120.07212 * 179.97438 * 6 4 3 35 35 H 1.09005 * 113.53797 * 268.98958 * 11 10 8 36 36 H 1.09001 * 113.54452 * 39.66537 * 11 10 8 37 37 H 1.08996 * 113.54373 * 320.33133 * 13 10 8 38 38 H 1.08998 * 113.54100 * 91.00985 * 13 10 8 39 39 H 1.08996 * 110.76287 * 21.22870 * 14 12 11 40 40 H 1.08993 * 110.76158 * 144.62983 * 14 12 11 41 41 H 1.09005 * 109.86757 * 98.83596 * 15 14 12 42 42 H 1.09004 * 109.86569 * 219.93675 * 15 14 12 43 43 H 0.97002 * 120.00214 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.40726 * 263.50486 * 25 16 15 45 45 H 1.09007 * 110.40076 * 141.07933 * 25 16 15 46 46 H 1.07996 * 120.07509 * 0.27887 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1991 0.0000 4 6 3.5808 1.2080 0.0054 5 6 4.3242 2.5189 0.0047 6 6 4.2812 0.0195 0.0102 7 6 3.5910 -1.1937 0.0103 8 6 4.3352 -2.4712 0.0160 9 8 5.5441 -2.4698 0.1431 10 7 3.6732 -3.6373 -0.1193 11 6 2.2792 -4.0378 -0.3818 12 6 2.8324 -5.3303 -0.9616 13 6 4.0269 -5.0671 -0.0630 14 6 3.0926 -5.3663 -2.4741 15 6 1.8156 -6.0440 -3.0227 16 7 1.1941 -6.7776 -1.9088 17 6 0.0313 -7.4974 -1.9791 18 1 -0.3450 -8.0025 -1.1018 19 6 -0.6639 -7.5777 -3.1779 20 7 -0.2051 -6.9625 -4.2472 21 14 -2.2498 -8.5601 -3.2739 22 1 -3.3995 -7.6765 -2.9530 23 1 -2.4123 -9.1052 -4.6456 24 1 -2.1986 -9.6793 -2.2993 25 6 2.0297 -6.6098 -0.7019 26 6 2.1953 -1.1956 0.0059 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5137 30 1 1.6537 2.1323 -0.0045 31 1 4.4995 2.8377 1.0322 32 1 5.2796 2.3945 -0.5051 33 1 3.7314 3.2725 -0.5135 34 1 5.3612 0.0278 0.0140 35 1 1.6903 -4.1838 0.5238 36 1 1.7766 -3.4090 -1.1167 37 1 4.9835 -5.2977 -0.5317 38 1 3.9274 -5.5013 0.9318 39 1 3.1961 -4.3571 -2.8725 40 1 3.9751 -5.9647 -2.7002 41 1 1.1266 -5.2872 -3.3979 42 1 2.0782 -6.7371 -3.8220 43 1 -0.6907 -7.0189 -5.0850 44 1 2.6998 -7.4611 -0.5821 45 1 1.4020 -6.4919 0.1815 46 1 1.6553 -2.1309 0.0059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073151557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:10 Heat of formation + Delta-G solvation = 37.873922 kcal Electronic energy + Delta-G solvation = -26154.658323 eV Core-core repulsion = 22624.411080 eV Total energy + Delta-G solvation = -3530.247243 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.15894 -40.58412 -39.19914 -37.35517 -34.58111 -34.10673 -33.27165 -31.19456 -30.24952 -28.34325 -27.88163 -27.55372 -26.93442 -25.73368 -23.93681 -22.13599 -21.66144 -20.49211 -19.85185 -18.66047 -17.97741 -17.63415 -17.00858 -16.74320 -16.66956 -16.21455 -15.97003 -15.58326 -15.20570 -14.76510 -14.66654 -14.25119 -14.14208 -14.00409 -13.93320 -13.74626 -13.65457 -13.34967 -13.33216 -12.88842 -12.78832 -12.77324 -12.55875 -12.49026 -12.25492 -12.03562 -12.00316 -11.90226 -11.83559 -11.67778 -11.21470 -10.90799 -10.65693 -9.97950 -9.68851 -9.59759 -8.84342 -7.79771 -5.14706 -0.18707 0.32164 1.50434 1.51512 1.60009 1.68062 1.75015 2.53538 2.77320 3.17147 3.32707 3.44201 3.55435 3.72247 3.81261 3.83618 4.02622 4.11608 4.20121 4.26858 4.31558 4.36076 4.45346 4.48364 4.61007 4.62975 4.66083 4.70234 4.81172 4.81998 4.84947 4.86054 4.93633 4.97913 5.02200 5.14857 5.16021 5.20313 5.29516 5.33460 5.49925 5.52055 5.55544 5.67597 5.80302 5.94208 6.23260 6.57484 6.98168 7.14638 7.82181 8.46652 9.30672 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.003371 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.291859 B = 8303.814254 C = 9361.936480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.093 4.093 3 C -0.095 4.095 4 C -0.094 4.094 5 C -0.111 4.111 6 C -0.086 4.086 7 C -0.141 4.141 8 C 0.580 3.420 9 O -0.584 6.584 10 N -0.637 5.637 11 C 0.120 3.880 12 C -0.099 4.099 13 C 0.126 3.874 14 C -0.104 4.104 15 C 0.192 3.808 16 N -0.624 5.624 17 C -0.234 4.234 18 H 0.088 0.912 19 C -0.067 4.067 20 N -0.953 5.953 21 Si 0.975 3.025 22 H -0.285 1.285 23 H -0.300 1.300 24 H -0.269 1.269 25 C 0.153 3.847 26 C -0.111 4.111 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.083 0.917 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.013 0.987 42 H 0.004 0.996 43 H 0.244 0.756 44 H 0.036 0.964 45 H 0.061 0.939 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 16.894 11.039 20.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.113 4.113 4 C -0.094 4.094 5 C -0.168 4.168 6 C -0.105 4.105 7 C -0.144 4.144 8 C 0.373 3.627 9 O -0.467 6.467 10 N -0.370 5.370 11 C -0.001 4.001 12 C -0.101 4.101 13 C 0.004 3.996 14 C -0.142 4.142 15 C 0.066 3.934 16 N -0.351 5.351 17 C -0.363 4.363 18 H 0.106 0.894 19 C -0.260 4.260 20 N -0.602 5.602 21 Si 0.804 3.196 22 H -0.212 1.212 23 H -0.227 1.227 24 H -0.193 1.193 25 C 0.028 3.972 26 C -0.129 4.129 27 H 0.094 0.906 28 H 0.089 0.911 29 H 0.106 0.894 30 H 0.173 0.827 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.105 0.895 34 H 0.142 0.858 35 H 0.131 0.869 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.132 0.868 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.031 0.969 42 H 0.022 0.978 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.711 17.016 10.994 20.799 hybrid contribution -0.647 -0.918 -0.694 1.320 sum 4.065 16.098 10.299 19.538 Atomic orbital electron populations 1.20870 0.88904 1.04105 1.03265 1.20213 0.97726 0.92465 0.98945 1.21500 0.93386 0.98647 0.97739 1.20198 0.94356 0.95635 0.99195 1.20849 1.00067 0.92352 1.03499 1.21200 1.00296 0.91038 0.98013 1.19840 0.94372 0.92543 1.07666 1.18189 0.86062 0.83053 0.75432 1.90711 1.15179 1.87446 1.53336 1.49651 1.12384 1.05417 1.69561 1.23103 0.83619 0.92772 1.00637 1.22020 0.96650 0.95810 0.95583 1.22859 0.98346 0.77843 1.00593 1.22261 0.98317 1.00292 0.93314 1.20892 0.90247 0.92894 0.89325 1.44814 1.24533 1.58885 1.06846 1.19462 0.97775 1.23063 0.95973 0.89450 1.25604 1.02451 1.02220 0.95740 1.70185 1.40780 1.48654 1.00598 0.85126 0.79659 0.78439 0.76397 1.21244 1.22731 1.19344 1.21302 0.92361 0.93508 0.90078 1.21831 0.92588 0.99944 0.98535 0.90566 0.91121 0.89362 0.82667 0.89863 0.91297 0.89547 0.85780 0.86855 0.90104 0.90351 0.86827 0.91676 0.90843 0.96866 0.97753 0.94639 0.94643 0.92123 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.75 10.01 71.24 0.71 -1.03 16 2 C -0.09 -1.88 5.87 -19.90 -0.12 -2.00 16 3 C -0.09 -1.66 9.34 22.33 0.21 -1.46 16 4 C -0.09 -1.83 5.87 -19.90 -0.12 -1.95 16 5 C -0.11 -1.42 10.01 71.24 0.71 -0.71 16 6 C -0.09 -2.22 9.24 22.53 0.21 -2.01 16 7 C -0.14 -4.03 5.87 -20.09 -0.12 -4.15 16 8 C 0.58 19.16 8.01 86.79 0.69 19.85 16 9 O -0.58 -22.90 17.14 -3.89 -0.07 -22.96 16 10 N -0.64 -18.70 3.68 -863.25 -3.17 -21.87 16 11 C 0.12 3.29 5.43 83.77 0.45 3.74 16 12 C -0.10 -3.05 1.06 -52.62 -0.06 -3.11 16 13 C 0.13 3.36 8.03 83.67 0.67 4.03 16 14 C -0.10 -3.76 6.41 31.32 0.20 -3.56 16 15 C 0.19 9.18 5.39 86.81 0.47 9.64 16 16 N -0.62 -30.00 3.41 -693.44 -2.36 -32.37 16 17 C -0.23 -12.40 10.28 84.03 0.86 -11.53 16 18 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 19 C -0.07 -3.72 5.49 84.86 0.47 -3.25 16 20 N -0.95 -56.23 10.30 21.65 0.22 -56.01 16 21 Si 0.97 44.46 29.55 68.60 2.03 46.49 16 22 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C 0.15 5.46 6.70 86.23 0.58 6.04 16 26 C -0.11 -2.72 8.80 22.53 0.20 -2.53 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.07 8.08 -2.39 -0.02 1.06 16 29 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.89 8.08 -2.38 -0.02 0.87 16 33 H 0.09 0.80 8.08 -2.39 -0.02 0.78 16 34 H 0.12 3.29 7.67 -2.91 -0.02 3.27 16 35 H 0.11 2.59 8.04 -2.38 -0.02 2.57 16 36 H 0.08 2.33 6.84 -2.39 -0.02 2.31 16 37 H 0.08 2.15 8.13 -2.39 -0.02 2.13 16 38 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.06 2.30 8.07 -2.39 -0.02 2.28 16 40 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.01 0.71 7.38 -2.38 -0.02 0.69 16 42 H 0.00 0.23 7.49 -2.39 -0.02 0.22 16 43 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 44 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.06 1.97 8.00 -2.38 -0.02 1.95 16 46 H 0.14 3.29 4.18 -2.91 -0.01 3.27 16 Total: -1.00 -70.58 370.25 3.64 -66.94 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.97 Total: 13.76 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 6.03 Total: 6.03 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -5.31 Total: -110.25 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.07 Total: -22.96 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -70.58 3.64 -66.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073151557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.812 kcal (2) G-P(sol) polarization free energy of solvation -70.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds