Wall clock time and date at job start Fri Apr 10 2020 23:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38254 * 120.00297 * 2 1 4 4 C 1.38203 * 120.00097 * 180.23325 * 3 2 1 5 5 C 1.38267 * 119.99868 * 359.80865 * 4 3 2 6 6 C 1.38205 * 120.00037 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99424 * 179.78796 * 2 1 3 8 8 C 1.50703 * 120.00547 * 0.02562 * 7 2 1 9 9 C 1.50700 * 109.47148 * 84.72382 * 8 7 2 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.47384 * 135.85619 * 359.35208 * 11 9 8 13 13 C 1.52075 * 87.41120 * 154.39047 * 12 11 9 14 14 C 1.47395 * 135.84806 * 179.72714 * 11 9 8 15 15 C 1.53512 * 117.21240 * 267.27925 * 13 12 11 16 16 C 1.54628 * 102.70124 * 262.93062 * 15 13 12 17 17 N 1.47147 * 107.37863 * 339.38392 * 16 15 13 18 18 C 1.36933 * 125.57857 * 179.12156 * 17 16 15 19 19 H 1.08001 * 120.00434 * 179.97438 * 18 17 16 20 20 C 1.38820 * 120.00278 * 359.97438 * 18 17 16 21 21 N 1.31617 * 119.99435 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00240 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47081 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46974 * 119.99768 * 22 20 18 25 25 H 1.48493 * 109.47314 * 239.99934 * 22 20 18 26 26 C 1.47754 * 108.83895 * 359.09216 * 17 16 15 27 27 H 1.09000 * 109.46739 * 270.21118 * 1 2 3 28 28 H 1.08994 * 109.46775 * 30.21171 * 1 2 3 29 29 H 1.08997 * 109.47051 * 150.20961 * 1 2 3 30 30 H 1.08002 * 119.99645 * 0.06377 * 3 2 1 31 31 H 1.08003 * 120.00161 * 179.83398 * 4 3 2 32 32 H 1.08000 * 119.99494 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.00388 * 179.97438 * 6 5 4 34 34 H 1.09009 * 109.46601 * 324.72403 * 8 7 2 35 35 H 1.08998 * 109.47035 * 204.72911 * 8 7 2 36 36 H 1.09000 * 113.54819 * 269.00624 * 12 11 9 37 37 H 1.09000 * 113.54211 * 39.68178 * 12 11 9 38 38 H 1.08994 * 113.54321 * 320.32174 * 14 11 9 39 39 H 1.08998 * 113.54056 * 90.93237 * 14 11 9 40 40 H 1.08994 * 110.76800 * 21.23768 * 15 13 12 41 41 H 1.09006 * 110.75668 * 144.62974 * 15 13 12 42 42 H 1.08994 * 109.86413 * 98.84252 * 16 15 13 43 43 H 1.09011 * 109.86087 * 219.80421 * 16 15 13 44 44 H 0.97004 * 119.99392 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.40266 * 263.49533 * 26 17 16 46 46 H 1.09003 * 110.40622 * 141.07696 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0049 5 6 4.2717 -0.0002 -0.0057 6 6 3.5807 -1.1971 -0.0012 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5021 0.0087 9 6 1.0808 -2.8768 -1.4050 10 8 1.4022 -2.1552 -2.3253 11 7 0.3938 -4.0110 -1.6459 12 6 -0.1513 -5.1109 -0.8302 13 6 -1.1714 -5.3333 -1.9359 14 6 -0.1336 -4.6945 -2.8406 15 6 -2.5195 -4.6110 -1.8029 16 6 -3.4287 -5.6989 -1.1860 17 7 -2.8043 -7.0023 -1.4626 18 6 -3.2916 -8.2192 -1.0667 19 1 -2.7579 -9.1232 -1.3205 20 6 -4.4716 -8.2911 -0.3390 21 7 -5.1217 -7.1894 -0.0293 22 14 -5.1367 -9.9511 0.2005 23 1 -4.2268 -11.0259 -0.2711 24 1 -5.2248 -9.9912 1.6823 25 1 -6.4874 -10.1561 -0.3814 26 6 -1.5659 -6.7831 -2.2381 27 1 -0.3633 0.0038 1.0277 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3633 -0.8918 -0.5106 30 1 1.6584 2.1326 0.0010 31 1 4.1205 2.1325 -0.0076 32 1 5.3517 -0.0002 -0.0091 33 1 4.1206 -2.1325 -0.0023 34 1 0.5360 -2.3951 0.6015 35 1 2.0711 -3.2820 0.4415 36 1 0.5411 -5.9430 -0.7028 37 1 -0.5914 -4.7789 0.1101 38 1 -0.5588 -4.0147 -3.5789 39 1 0.5643 -5.4091 -3.2769 40 1 -2.4345 -3.7539 -1.1349 41 1 -2.8918 -4.3048 -2.7806 42 1 -3.5093 -5.5476 -0.1097 43 1 -4.4184 -5.6561 -1.6410 44 1 -5.9465 -7.2396 0.4789 45 1 -1.7570 -6.9108 -3.3035 46 1 -0.7840 -7.4666 -1.9068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073412667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:21 Heat of formation + Delta-G solvation = 52.282990 kcal Electronic energy + Delta-G solvation = -25941.875569 eV Core-core repulsion = 22412.253150 eV Total energy + Delta-G solvation = -3529.622419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.75430 -39.71662 -38.02325 -35.66733 -33.42000 -32.37871 -32.14811 -29.82314 -28.93088 -27.83306 -26.74437 -25.97863 -25.41746 -23.66086 -22.20085 -21.06425 -20.32256 -19.24764 -18.31224 -16.95801 -16.63932 -16.56239 -16.12026 -15.71421 -15.19234 -14.97191 -14.74689 -14.34469 -13.88140 -13.81914 -13.61799 -13.27897 -13.05484 -12.92180 -12.46985 -12.37338 -12.29304 -12.05630 -12.01390 -11.94937 -11.84567 -11.08548 -11.04978 -11.03703 -10.94538 -10.70797 -10.44960 -10.21742 -10.10481 -9.88440 -9.71343 -9.59985 -8.88189 -8.65276 -8.63706 -8.53950 -6.87530 -5.75113 -3.08687 1.23102 1.31411 2.71288 2.93393 3.37265 3.43111 3.45400 3.67889 4.42539 4.53410 4.55227 4.67026 4.71412 4.84838 4.89707 4.95405 5.12024 5.21062 5.25261 5.36968 5.45564 5.46132 5.51934 5.55147 5.60070 5.63840 5.67136 5.73305 5.78988 5.80668 5.87860 5.98822 6.08736 6.15548 6.20340 6.36695 6.40018 6.43092 6.48737 6.55481 6.63485 6.67907 6.92005 7.52363 7.57568 7.78894 7.85732 8.20866 8.25386 9.17913 9.77913 10.43392 11.36517 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027378 B = 0.002663 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.479919 B =10513.811767 C =10765.342100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.066 4.066 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.128 4.128 6 C -0.104 4.104 7 C -0.064 4.064 8 C -0.099 4.099 9 C 0.542 3.458 10 O -0.540 6.540 11 N -0.645 5.645 12 C 0.119 3.881 13 C -0.105 4.105 14 C 0.119 3.881 15 C -0.116 4.116 16 C 0.179 3.821 17 N -0.605 5.605 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.153 3.847 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.044 0.956 44 H 0.252 0.748 45 H 0.026 0.974 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.769 12.830 1.148 19.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.066 4.066 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.146 4.146 6 C -0.122 4.122 7 C -0.064 4.064 8 C -0.139 4.139 9 C 0.332 3.668 10 O -0.417 6.417 11 N -0.381 5.381 12 C -0.003 4.003 13 C -0.107 4.107 14 C -0.004 4.004 15 C -0.155 4.155 16 C 0.055 3.945 17 N -0.331 5.331 18 C -0.356 4.356 19 H 0.097 0.903 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.026 3.974 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.101 0.899 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 14.871 13.335 0.825 19.991 hybrid contribution -0.337 -0.926 0.320 1.036 sum 14.534 12.409 1.145 19.145 Atomic orbital electron populations 1.20846 0.91242 1.03228 1.02164 1.19735 0.96030 0.92560 0.98314 1.20975 0.94277 0.97304 1.01405 1.21091 0.94299 0.97930 1.00382 1.21042 0.99656 0.92483 1.01372 1.20966 0.93378 0.98208 0.99658 1.19172 0.93433 0.93195 1.00639 1.20627 1.02055 0.96126 0.95053 1.19986 0.76393 0.79562 0.90872 1.90714 1.53736 1.50862 1.46368 1.49882 1.55296 1.20551 1.12342 1.22898 0.93403 0.87541 0.96486 1.22179 0.94276 0.98744 0.95471 1.22755 0.93635 0.93901 0.90085 1.22459 0.93466 0.98618 1.00914 1.21218 0.93314 0.81533 0.98450 1.44546 1.22809 1.02926 1.62849 1.19091 1.04529 0.83667 1.28269 0.90347 1.24801 0.97739 0.97232 1.00687 1.69971 1.18117 1.25073 1.43738 0.86054 0.78700 0.82992 0.78060 1.20514 1.21785 1.21794 1.21143 0.90130 0.90844 0.95255 0.90967 0.91399 0.91463 0.86166 0.86283 0.86241 0.86289 0.87824 0.88200 0.89524 0.90100 0.90564 0.89905 0.92141 0.91841 0.93521 0.93828 0.93801 0.95591 0.93936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.22 36.01 0.33 -0.95 16 2 C -0.07 -0.80 5.88 -104.62 -0.62 -1.42 16 3 C -0.12 -1.32 9.70 -39.59 -0.38 -1.70 16 4 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 5 C -0.13 -1.32 10.05 -39.58 -0.40 -1.71 16 6 C -0.10 -1.19 9.68 -39.58 -0.38 -1.57 16 7 C -0.06 -0.79 4.37 -104.62 -0.46 -1.25 16 8 C -0.10 -1.15 4.97 -29.03 -0.14 -1.30 16 9 C 0.54 8.04 7.27 -10.98 -0.08 7.96 16 10 O -0.54 -9.93 16.81 5.55 0.09 -9.83 16 11 N -0.65 -9.14 3.70 -185.72 -0.69 -9.83 16 12 C 0.12 1.64 7.78 -7.33 -0.06 1.58 16 13 C -0.10 -1.65 1.06 -155.22 -0.16 -1.81 16 14 C 0.12 1.67 8.02 -7.47 -0.06 1.61 16 15 C -0.12 -2.04 6.40 -25.61 -0.16 -2.20 16 16 C 0.18 4.10 5.39 -2.83 -0.02 4.09 16 17 N -0.60 -14.45 3.41 -170.53 -0.58 -15.03 16 18 C -0.23 -6.03 10.28 -15.06 -0.15 -6.19 16 19 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -26.19 10.30 55.49 0.57 -25.61 16 22 Si 0.91 21.45 29.55 -169.99 -5.02 16.43 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 26 C 0.15 2.85 6.70 -3.22 -0.02 2.83 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 29 H 0.07 0.82 6.15 -51.93 -0.32 0.50 16 30 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 33 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.10 1.09 7.01 -51.92 -0.36 0.73 16 35 H 0.10 0.97 8.05 -51.93 -0.42 0.55 16 36 H 0.09 1.08 8.06 -51.93 -0.42 0.66 16 37 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.08 1.10 8.13 -51.93 -0.42 0.67 16 39 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.99 8.07 -51.93 -0.42 0.58 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.18 7.38 -51.93 -0.38 0.80 16 43 H 0.04 1.12 7.49 -51.92 -0.39 0.74 16 44 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.04 0.75 8.00 -51.93 -0.42 0.34 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -31.98 372.93 -10.59 -42.57 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.32 Total: -0.35 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -3.26 Total: -3.96 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: -0.70 Total: -50.47 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.98 -10.59 -42.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073412667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.852 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds