Wall clock time and date at job start Fri Apr 10 2020 23:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50711 * 1 3 3 C 1.38254 * 120.00297 * 2 1 4 4 C 1.38203 * 120.00097 * 180.23325 * 3 2 1 5 5 C 1.38267 * 119.99868 * 359.80865 * 4 3 2 6 6 C 1.38205 * 120.00037 * 359.97438 * 5 4 3 7 7 C 1.38212 * 119.99424 * 179.78796 * 2 1 3 8 8 C 1.50703 * 120.00547 * 0.02562 * 7 2 1 9 9 C 1.50700 * 109.47148 * 84.72382 * 8 7 2 10 10 O 1.21283 * 119.99803 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99675 * 180.28037 * 9 8 7 12 12 C 1.47384 * 135.85619 * 359.35208 * 11 9 8 13 13 C 1.52075 * 87.41120 * 154.39047 * 12 11 9 14 14 C 1.47395 * 135.84806 * 179.72714 * 11 9 8 15 15 C 1.53512 * 117.21240 * 267.27925 * 13 12 11 16 16 C 1.54628 * 102.70124 * 262.93062 * 15 13 12 17 17 N 1.47147 * 107.37863 * 339.38392 * 16 15 13 18 18 C 1.36933 * 125.57857 * 179.12156 * 17 16 15 19 19 H 1.08001 * 120.00434 * 179.97438 * 18 17 16 20 20 C 1.38820 * 120.00278 * 359.97438 * 18 17 16 21 21 N 1.31617 * 119.99435 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00240 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47081 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46974 * 119.99768 * 22 20 18 25 25 H 1.48493 * 109.47314 * 239.99934 * 22 20 18 26 26 C 1.47754 * 108.83895 * 359.09216 * 17 16 15 27 27 H 1.09000 * 109.46739 * 270.21118 * 1 2 3 28 28 H 1.08994 * 109.46775 * 30.21171 * 1 2 3 29 29 H 1.08997 * 109.47051 * 150.20961 * 1 2 3 30 30 H 1.08002 * 119.99645 * 0.06377 * 3 2 1 31 31 H 1.08003 * 120.00161 * 179.83398 * 4 3 2 32 32 H 1.08000 * 119.99494 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.00388 * 179.97438 * 6 5 4 34 34 H 1.09009 * 109.46601 * 324.72403 * 8 7 2 35 35 H 1.08998 * 109.47035 * 204.72911 * 8 7 2 36 36 H 1.09000 * 113.54819 * 269.00624 * 12 11 9 37 37 H 1.09000 * 113.54211 * 39.68178 * 12 11 9 38 38 H 1.08994 * 113.54321 * 320.32174 * 14 11 9 39 39 H 1.08998 * 113.54056 * 90.93237 * 14 11 9 40 40 H 1.08994 * 110.76800 * 21.23768 * 15 13 12 41 41 H 1.09006 * 110.75668 * 144.62974 * 15 13 12 42 42 H 1.08994 * 109.86413 * 98.84252 * 16 15 13 43 43 H 1.09011 * 109.86087 * 219.80421 * 16 15 13 44 44 H 0.97004 * 119.99392 * 179.97438 * 21 20 18 45 45 H 1.08999 * 110.40266 * 263.49533 * 26 17 16 46 46 H 1.09003 * 110.40622 * 141.07696 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0049 5 6 4.2717 -0.0002 -0.0057 6 6 3.5807 -1.1971 -0.0012 7 6 2.1980 -1.1970 0.0044 8 6 1.4445 -2.5021 0.0087 9 6 1.0808 -2.8768 -1.4050 10 8 1.4022 -2.1552 -2.3253 11 7 0.3938 -4.0110 -1.6459 12 6 -0.1513 -5.1109 -0.8302 13 6 -1.1714 -5.3333 -1.9359 14 6 -0.1336 -4.6945 -2.8406 15 6 -2.5195 -4.6110 -1.8029 16 6 -3.4287 -5.6989 -1.1860 17 7 -2.8043 -7.0023 -1.4626 18 6 -3.2916 -8.2192 -1.0667 19 1 -2.7579 -9.1232 -1.3205 20 6 -4.4716 -8.2911 -0.3390 21 7 -5.1217 -7.1894 -0.0293 22 14 -5.1367 -9.9511 0.2005 23 1 -4.2268 -11.0259 -0.2711 24 1 -5.2248 -9.9912 1.6823 25 1 -6.4874 -10.1561 -0.3814 26 6 -1.5659 -6.7831 -2.2381 27 1 -0.3633 0.0038 1.0277 28 1 -0.3633 0.8881 -0.5171 29 1 -0.3633 -0.8918 -0.5106 30 1 1.6584 2.1326 0.0010 31 1 4.1205 2.1325 -0.0076 32 1 5.3517 -0.0002 -0.0091 33 1 4.1206 -2.1325 -0.0023 34 1 0.5360 -2.3951 0.6015 35 1 2.0711 -3.2820 0.4415 36 1 0.5411 -5.9430 -0.7028 37 1 -0.5914 -4.7789 0.1101 38 1 -0.5588 -4.0147 -3.5789 39 1 0.5643 -5.4091 -3.2769 40 1 -2.4345 -3.7539 -1.1349 41 1 -2.8918 -4.3048 -2.7806 42 1 -3.5093 -5.5476 -0.1097 43 1 -4.4184 -5.6561 -1.6410 44 1 -5.9465 -7.2396 0.4789 45 1 -1.7570 -6.9108 -3.3035 46 1 -0.7840 -7.4666 -1.9068 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073412667.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:21 Heat of formation + Delta-G solvation = 35.097918 kcal Electronic energy + Delta-G solvation = -25942.620769 eV Core-core repulsion = 22412.253150 eV Total energy + Delta-G solvation = -3530.367620 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94865 -40.64700 -39.19909 -37.26948 -34.29500 -34.04100 -33.12856 -31.32917 -30.43822 -28.89817 -27.71643 -27.17146 -26.83825 -25.28340 -23.02294 -22.13297 -21.89886 -20.43840 -19.62675 -18.57048 -17.95294 -17.46315 -17.11629 -16.86634 -16.59203 -16.22303 -15.93760 -15.67657 -15.56555 -14.92982 -14.59412 -14.21864 -14.05443 -14.01096 -13.82836 -13.71037 -13.61000 -13.27556 -13.22500 -12.94189 -12.87608 -12.83159 -12.77695 -12.24324 -11.96179 -11.91827 -11.85348 -11.82432 -11.79546 -11.66308 -11.20383 -10.87269 -10.66447 -9.72752 -9.67360 -9.46364 -8.83581 -7.80116 -5.14506 0.41490 0.51328 1.50001 1.50694 1.60108 1.60535 1.84421 2.53432 2.85130 3.28137 3.41441 3.56617 3.64525 3.73781 3.83733 3.90329 4.07333 4.09653 4.17456 4.23720 4.33538 4.42738 4.45594 4.53544 4.59286 4.63300 4.69967 4.72618 4.74772 4.79760 4.82666 4.87733 4.91482 4.97410 5.06085 5.18223 5.19661 5.22143 5.28832 5.52596 5.58033 5.62505 5.69930 5.73364 5.82456 6.15108 6.24162 6.72770 7.12522 7.15469 7.82792 8.46991 9.30482 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.027378 B = 0.002663 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.479919 B =10513.811767 C =10765.342100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.123 4.123 5 C -0.135 4.135 6 C -0.119 4.119 7 C -0.085 4.085 8 C -0.093 4.093 9 C 0.542 3.458 10 O -0.579 6.579 11 N -0.644 5.644 12 C 0.126 3.874 13 C -0.100 4.100 14 C 0.124 3.876 15 C -0.102 4.102 16 C 0.190 3.810 17 N -0.625 5.625 18 C -0.232 4.232 19 H 0.086 0.914 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.974 3.026 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.298 1.298 26 C 0.151 3.849 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.014 0.986 43 H 0.002 0.998 44 H 0.244 0.756 45 H 0.032 0.968 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.005 12.821 1.260 21.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.141 4.141 5 C -0.153 4.153 6 C -0.137 4.137 7 C -0.086 4.086 8 C -0.132 4.132 9 C 0.334 3.666 10 O -0.459 6.459 11 N -0.379 5.379 12 C 0.004 3.996 13 C -0.102 4.102 14 C 0.001 3.999 15 C -0.140 4.140 16 C 0.065 3.935 17 N -0.351 5.351 18 C -0.362 4.362 19 H 0.104 0.896 20 C -0.261 4.261 21 N -0.602 5.602 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.225 1.225 26 C 0.026 3.974 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.154 0.846 31 H 0.162 0.838 32 H 0.160 0.840 33 H 0.149 0.851 34 H 0.131 0.869 35 H 0.139 0.861 36 H 0.127 0.873 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.033 0.967 43 H 0.021 0.979 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.139 13.309 0.924 21.719 hybrid contribution -1.003 -0.900 0.232 1.367 sum 16.137 12.408 1.156 20.389 Atomic orbital electron populations 1.20825 0.90934 1.02559 1.02849 1.19997 0.96595 0.93175 0.98986 1.21275 0.94979 0.97654 1.01234 1.21456 0.94247 0.99045 0.99378 1.21396 1.00970 0.92253 1.00638 1.21246 0.93331 0.99323 0.99754 1.19366 0.94077 0.93485 1.01625 1.20637 1.02818 0.96660 0.93060 1.20485 0.75579 0.78883 0.91672 1.90692 1.55443 1.51963 1.47829 1.49874 1.54971 1.20567 1.12458 1.22936 0.92939 0.87962 0.95744 1.22001 0.93942 0.96502 0.97719 1.22764 0.93266 0.94046 0.89784 1.22249 0.93545 0.97239 1.00944 1.20909 0.92846 0.83258 0.96477 1.44831 1.24636 1.02435 1.63247 1.19495 1.04382 0.85085 1.27192 0.89578 1.25597 0.98505 1.00317 1.01669 1.70188 1.18267 1.26921 1.44818 0.85062 0.77725 0.79761 0.77116 1.18816 1.22129 1.22529 1.21308 0.88407 0.92995 0.94717 0.89608 0.90903 0.93197 0.84574 0.83834 0.83993 0.85104 0.86949 0.86096 0.87341 0.89921 0.90894 0.87626 0.90981 0.91221 0.96725 0.97948 0.94627 0.95069 0.92342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 9.22 71.24 0.66 -1.76 16 2 C -0.09 -2.03 5.88 -19.86 -0.12 -2.15 16 3 C -0.13 -2.71 9.70 22.27 0.22 -2.50 16 4 C -0.12 -2.25 10.05 22.27 0.22 -2.02 16 5 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 6 C -0.12 -2.53 9.68 22.27 0.22 -2.31 16 7 C -0.09 -2.00 4.37 -19.86 -0.09 -2.09 16 8 C -0.09 -2.00 4.97 29.10 0.14 -1.86 16 9 C 0.54 15.25 7.27 87.66 0.64 15.88 16 10 O -0.58 -20.84 16.81 -3.04 -0.05 -20.89 16 11 N -0.64 -16.80 3.70 -859.88 -3.18 -19.97 16 12 C 0.13 3.14 7.78 83.77 0.65 3.79 16 13 C -0.10 -2.95 1.06 -52.62 -0.06 -3.00 16 14 C 0.12 3.17 8.02 83.67 0.67 3.84 16 15 C -0.10 -3.51 6.40 31.32 0.20 -3.31 16 16 C 0.19 8.93 5.39 86.81 0.47 9.40 16 17 N -0.63 -29.84 3.41 -693.44 -2.36 -32.21 16 18 C -0.23 -12.32 10.28 84.04 0.86 -11.46 16 19 H 0.09 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.07 -3.75 5.49 84.86 0.47 -3.29 16 21 N -0.95 -55.93 10.30 21.65 0.22 -55.71 16 22 Si 0.97 44.49 29.55 68.60 2.03 46.52 16 23 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 24 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 26 C 0.15 5.36 6.70 86.22 0.58 5.94 16 27 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.40 8.09 -2.39 -0.02 1.38 16 29 H 0.05 1.20 6.15 -2.39 -0.01 1.19 16 30 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 31 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.11 2.20 7.01 -2.38 -0.02 2.19 16 35 H 0.12 2.05 8.05 -2.39 -0.02 2.03 16 36 H 0.11 2.30 8.06 -2.39 -0.02 2.28 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 39 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.07 2.32 8.07 -2.39 -0.02 2.30 16 41 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 42 H 0.01 0.77 7.38 -2.39 -0.02 0.75 16 43 H 0.00 0.12 7.49 -2.38 -0.02 0.11 16 44 H 0.24 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.06 1.91 8.00 -2.39 -0.02 1.89 16 Total: -1.00 -70.53 372.93 3.57 -66.96 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.95 Total: 14.49 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: 5.96 Total: 0.80 kcal Atomic # 7 Polarization: -102.57 SS G_CDS: -5.32 Total: -107.89 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -70.53 3.57 -66.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073412667.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.063 kcal (2) G-P(sol) polarization free energy of solvation -70.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds