Wall clock time and date at job start Fri Apr 10 2020 23:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38240 * 119.99993 * 2 1 4 4 C 1.38231 * 119.99588 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00610 * 359.96074 * 4 3 2 6 6 C 1.50692 * 120.00306 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47266 * 89.99922 * 6 5 4 8 8 O 1.21277 * 120.00050 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99956 * 180.02562 * 7 6 5 10 10 C 1.47346 * 125.53076 * 0.03744 * 9 7 6 11 11 C 1.56794 * 105.03215 * 156.46766 * 10 9 7 12 12 C 1.54801 * 100.66476 * 37.18044 * 11 10 9 13 13 H 1.08993 * 112.63998 * 85.70387 * 12 11 10 14 14 C 1.53269 * 109.74757 * 211.98595 * 12 11 10 15 15 N 1.46588 * 108.15814 * 96.44430 * 14 12 11 16 16 C 1.36935 * 125.30673 * 177.86751 * 15 14 12 17 17 H 1.07999 * 119.99917 * 350.09401 * 16 15 14 18 18 C 1.38810 * 119.99875 * 170.10431 * 16 15 14 19 19 N 1.31614 * 120.00114 * 350.63595 * 18 16 15 20 20 Si 1.86804 * 119.99978 * 170.63591 * 18 16 15 21 21 H 1.48503 * 109.46951 * 94.65005 * 20 18 16 22 22 H 1.48497 * 109.47429 * 214.65138 * 20 18 16 23 23 H 1.48509 * 109.46917 * 334.65386 * 20 18 16 24 24 C 1.46607 * 109.38557 * 357.88814 * 15 14 12 25 25 C 1.47217 * 125.52721 * 179.97438 * 9 7 6 26 26 H 1.08999 * 112.72152 * 56.00737 * 25 9 7 27 27 C 1.38237 * 119.99746 * 0.27076 * 5 4 3 28 28 C 1.38238 * 120.00044 * 359.51736 * 27 5 4 29 29 H 1.08992 * 109.47222 * 89.99640 * 1 2 3 30 30 H 1.09005 * 109.47191 * 210.00186 * 1 2 3 31 31 H 1.09006 * 109.46809 * 329.99525 * 1 2 3 32 32 H 1.07997 * 120.00101 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99539 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47489 * 330.00021 * 6 5 4 35 35 H 1.09001 * 109.47499 * 209.99990 * 6 5 4 36 36 H 1.08995 * 110.36074 * 275.35976 * 10 9 7 37 37 H 1.09002 * 110.35542 * 37.66082 * 10 9 7 38 38 H 1.09005 * 111.09937 * 279.54348 * 11 10 9 39 39 H 1.08996 * 111.71939 * 155.08092 * 11 10 9 40 40 H 1.08995 * 109.73932 * 216.12937 * 14 12 11 41 41 H 1.09003 * 109.73632 * 336.78871 * 14 12 11 42 42 H 0.97001 * 120.00270 * 180.02562 * 19 18 16 43 43 H 1.09010 * 109.91162 * 137.16688 * 24 15 14 44 44 H 1.08994 * 109.91826 * 258.25706 * 24 15 14 45 45 H 1.08000 * 119.99945 * 179.72746 * 27 5 4 46 46 H 1.07993 * 120.00455 * 180.25351 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0019 6 6 5.7786 0.0000 0.0031 7 6 6.2799 0.0010 1.4243 8 8 5.4911 0.0011 2.3455 9 7 7.6048 0.0016 1.6716 10 6 8.6666 0.0023 0.6499 11 6 9.9219 0.6075 1.3684 12 6 9.7625 0.0004 2.7834 13 1 10.2001 -0.9946 2.8648 14 6 10.3157 0.9739 3.8300 15 7 9.1955 1.7519 4.3674 16 6 9.2891 2.6954 5.3554 17 1 10.2076 2.8043 5.9128 18 6 8.2032 3.5118 5.6405 19 7 7.1523 3.5097 4.8481 20 14 8.2334 4.6133 7.1489 21 1 8.7079 5.9668 6.7640 22 1 6.8652 4.7116 7.7177 23 1 9.1515 4.0372 8.1642 24 6 7.9593 1.3619 3.6825 25 6 8.2260 0.0031 3.0063 26 1 7.8942 -0.8299 3.6260 27 6 3.5805 -1.1972 -0.0029 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1324 0.0001 34 1 6.1425 0.8896 -0.5111 35 1 6.1424 -0.8904 -0.5099 36 1 8.8742 -1.0150 0.3181 37 1 8.3785 0.6266 -0.1959 38 1 9.8684 1.6957 1.4016 39 1 10.8509 0.2773 0.9036 40 1 10.7958 0.4163 4.6341 41 1 11.0384 1.6438 3.3639 42 1 6.3937 4.0804 5.0472 43 1 7.1493 1.2642 4.4055 44 1 7.6990 2.1084 2.9322 45 1 4.1205 -2.1325 -0.0063 46 1 1.6581 -2.1324 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076005890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:23 Heat of formation + Delta-G solvation = 18.020417 kcal Electronic energy + Delta-G solvation = -26329.748213 eV Core-core repulsion = 22798.640058 eV Total energy + Delta-G solvation = -3531.108156 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.16316 -39.24619 -37.64531 -34.86282 -33.69021 -32.24274 -30.82502 -30.62213 -29.85666 -28.40000 -26.76828 -25.27482 -24.35267 -22.64457 -22.61632 -21.03037 -20.33810 -19.54336 -18.56620 -17.00757 -16.56504 -16.15501 -15.77188 -15.33247 -15.01263 -14.80040 -14.50659 -14.19252 -13.76428 -13.53433 -13.33096 -13.30279 -12.95674 -12.73756 -12.53644 -12.36964 -12.12899 -11.94050 -11.81232 -11.70109 -11.57345 -11.24096 -11.08017 -10.90764 -10.86182 -10.77731 -10.38634 -10.14356 -9.96684 -9.86472 -9.69289 -9.40803 -8.79471 -8.53386 -8.39322 -8.13186 -6.74790 -5.67117 -3.02701 1.39548 1.53386 3.07796 3.33186 3.43257 3.48714 3.51472 3.88869 4.53762 4.71020 4.75185 4.80501 4.83151 4.96792 5.09126 5.11818 5.19044 5.27247 5.44887 5.46339 5.49178 5.51503 5.57692 5.59257 5.61015 5.70377 5.76561 5.79609 5.82355 5.95884 6.05360 6.15138 6.16557 6.23814 6.36136 6.48684 6.54082 6.66027 6.66276 6.70218 6.71273 6.91321 7.10911 7.55023 7.69435 7.90724 8.00888 8.33112 8.64822 9.25714 9.87805 10.52213 11.44007 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.003832 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.050215 B = 7304.248198 C = 8976.519737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.097 4.097 5 C -0.066 4.066 6 C -0.097 4.097 7 C 0.526 3.474 8 O -0.520 6.520 9 N -0.610 5.610 10 C 0.101 3.899 11 C -0.121 4.121 12 C -0.109 4.109 13 H 0.086 0.914 14 C 0.144 3.856 15 N -0.600 5.600 16 C -0.237 4.237 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.910 5.910 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.180 3.820 25 C 0.115 3.885 26 H 0.080 0.920 27 C -0.103 4.103 28 C -0.122 4.122 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.026 0.974 42 H 0.253 0.747 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.118 0.882 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.076 -9.931 -15.579 18.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.115 4.115 5 C -0.066 4.066 6 C -0.137 4.137 7 C 0.313 3.687 8 O -0.394 6.394 9 N -0.345 5.345 10 C -0.022 4.022 11 C -0.159 4.159 12 C -0.129 4.129 13 H 0.104 0.896 14 C 0.018 3.982 15 N -0.327 5.327 16 C -0.365 4.365 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.556 5.556 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 C 0.054 3.946 25 C 0.011 3.989 26 H 0.098 0.902 27 C -0.121 4.121 28 C -0.140 4.140 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.139 0.861 34 H 0.117 0.883 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.040 0.960 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.055 0.945 45 H 0.136 0.864 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.750 -9.771 -14.996 18.518 hybrid contribution 0.107 0.666 0.797 1.044 sum -4.642 -9.105 -14.199 17.495 Atomic orbital electron populations 1.20767 0.91490 1.02701 1.01927 1.19880 0.95869 0.93315 1.00191 1.20968 0.94091 0.97452 1.01170 1.21010 0.94245 0.97594 0.98647 1.19278 0.93692 0.93565 1.00076 1.20652 0.93065 1.04670 0.95283 1.20035 0.80753 0.76957 0.90914 1.90767 1.54006 1.48470 1.46201 1.48495 1.04615 1.73514 1.07844 1.22592 0.88038 1.00076 0.91522 1.23108 0.96334 1.01596 0.94880 1.22847 0.95166 0.99191 0.95677 0.89582 1.21004 0.91848 0.92181 0.93183 1.44141 1.01705 1.44025 1.42845 1.18967 0.99311 1.09636 1.08623 0.90557 1.24860 0.97154 0.99011 0.99061 1.69996 1.07009 1.41625 1.36980 0.86165 0.76941 0.80377 0.82625 1.21629 1.21606 1.20560 1.21256 0.89503 0.88499 0.95369 1.22824 0.91055 1.01404 0.83631 0.90228 1.20915 0.94183 0.97242 0.99731 1.20913 0.94029 0.97333 1.01734 0.91470 0.91727 0.91624 0.86199 0.86053 0.88258 0.88509 0.91782 0.91115 0.89863 0.90284 0.95960 0.95662 0.93669 0.92251 0.94535 0.86423 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.09 -1.14 5.88 -104.62 -0.62 -1.76 16 3 C -0.12 -1.57 9.70 -39.58 -0.38 -1.95 16 4 C -0.10 -1.40 9.70 -39.59 -0.38 -1.78 16 5 C -0.07 -0.94 4.37 -104.63 -0.46 -1.39 16 6 C -0.10 -1.26 4.84 -29.04 -0.14 -1.41 16 7 C 0.53 9.50 7.67 -10.98 -0.08 9.41 16 8 O -0.52 -11.95 16.15 5.56 0.09 -11.86 16 9 N -0.61 -10.45 2.89 -160.52 -0.46 -10.91 16 10 C 0.10 1.26 6.72 -1.53 -0.01 1.25 16 11 C -0.12 -1.67 6.38 -23.73 -0.15 -1.82 16 12 C -0.11 -1.81 3.85 -88.33 -0.34 -2.15 16 13 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 14 C 0.14 2.96 6.66 -3.85 -0.03 2.93 16 15 N -0.60 -15.73 3.37 -172.24 -0.58 -16.31 16 16 C -0.24 -6.78 10.21 -15.06 -0.15 -6.94 16 17 H 0.08 2.10 7.85 -52.49 -0.41 1.68 16 18 C 0.00 -0.10 5.41 -17.43 -0.09 -0.19 16 19 N -0.91 -28.11 10.60 55.49 0.59 -27.52 16 20 Si 0.91 22.73 29.56 -169.99 -5.03 17.70 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.18 4.62 4.58 -3.41 -0.02 4.61 16 25 C 0.11 2.29 3.84 -65.77 -0.25 2.03 16 26 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 27 C -0.10 -1.36 9.70 -39.58 -0.38 -1.74 16 28 C -0.12 -1.51 9.70 -39.58 -0.38 -1.89 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.10 1.13 7.79 -51.93 -0.40 0.73 16 35 H 0.10 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.75 7.48 -51.93 -0.39 0.36 16 38 H 0.08 1.36 7.89 -51.93 -0.41 0.95 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.03 0.51 7.73 -51.93 -0.40 0.11 16 42 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.06 1.80 7.25 -51.92 -0.38 1.42 16 44 H 0.04 1.05 7.59 -51.93 -0.39 0.66 16 45 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -35.49 370.34 -10.74 -46.22 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.41 Total: 0.56 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -3.52 Total: -3.46 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.46 Total: -54.75 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.03 Total: 17.70 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.49 -10.74 -46.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076005890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.244 kcal (2) G-P(sol) polarization free energy of solvation -35.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds