Wall clock time and date at job start Fri Apr 10 2020 23:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38240 * 119.99993 * 2 1 4 4 C 1.38231 * 119.99588 * 179.97438 * 3 2 1 5 5 C 1.38232 * 120.00610 * 359.96074 * 4 3 2 6 6 C 1.50692 * 120.00306 * 180.02562 * 5 4 3 7 7 C 1.50705 * 109.47266 * 89.99922 * 6 5 4 8 8 O 1.21277 * 120.00050 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99956 * 180.02562 * 7 6 5 10 10 C 1.47346 * 125.53076 * 0.03744 * 9 7 6 11 11 C 1.56794 * 105.03215 * 156.46766 * 10 9 7 12 12 C 1.54801 * 100.66476 * 37.18044 * 11 10 9 13 13 H 1.08993 * 112.63998 * 85.70387 * 12 11 10 14 14 C 1.53269 * 109.74757 * 211.98595 * 12 11 10 15 15 N 1.46588 * 108.15814 * 96.44430 * 14 12 11 16 16 C 1.36935 * 125.30673 * 177.86751 * 15 14 12 17 17 H 1.07999 * 119.99917 * 350.09401 * 16 15 14 18 18 C 1.38810 * 119.99875 * 170.10431 * 16 15 14 19 19 N 1.31614 * 120.00114 * 350.63595 * 18 16 15 20 20 Si 1.86804 * 119.99978 * 170.63591 * 18 16 15 21 21 H 1.48503 * 109.46951 * 94.65005 * 20 18 16 22 22 H 1.48497 * 109.47429 * 214.65138 * 20 18 16 23 23 H 1.48509 * 109.46917 * 334.65386 * 20 18 16 24 24 C 1.46607 * 109.38557 * 357.88814 * 15 14 12 25 25 C 1.47217 * 125.52721 * 179.97438 * 9 7 6 26 26 H 1.08999 * 112.72152 * 56.00737 * 25 9 7 27 27 C 1.38237 * 119.99746 * 0.27076 * 5 4 3 28 28 C 1.38238 * 120.00044 * 359.51736 * 27 5 4 29 29 H 1.08992 * 109.47222 * 89.99640 * 1 2 3 30 30 H 1.09005 * 109.47191 * 210.00186 * 1 2 3 31 31 H 1.09006 * 109.46809 * 329.99525 * 1 2 3 32 32 H 1.07997 * 120.00101 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.99539 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47489 * 330.00021 * 6 5 4 35 35 H 1.09001 * 109.47499 * 209.99990 * 6 5 4 36 36 H 1.08995 * 110.36074 * 275.35976 * 10 9 7 37 37 H 1.09002 * 110.35542 * 37.66082 * 10 9 7 38 38 H 1.09005 * 111.09937 * 279.54348 * 11 10 9 39 39 H 1.08996 * 111.71939 * 155.08092 * 11 10 9 40 40 H 1.08995 * 109.73932 * 216.12937 * 14 12 11 41 41 H 1.09003 * 109.73632 * 336.78871 * 14 12 11 42 42 H 0.97001 * 120.00270 * 180.02562 * 19 18 16 43 43 H 1.09010 * 109.91162 * 137.16688 * 24 15 14 44 44 H 1.08994 * 109.91826 * 258.25706 * 24 15 14 45 45 H 1.08000 * 119.99945 * 179.72746 * 27 5 4 46 46 H 1.07993 * 120.00455 * 180.25351 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0019 6 6 5.7786 0.0000 0.0031 7 6 6.2799 0.0010 1.4243 8 8 5.4911 0.0011 2.3455 9 7 7.6048 0.0016 1.6716 10 6 8.6666 0.0023 0.6499 11 6 9.9219 0.6075 1.3684 12 6 9.7625 0.0004 2.7834 13 1 10.2001 -0.9946 2.8648 14 6 10.3157 0.9739 3.8300 15 7 9.1955 1.7519 4.3674 16 6 9.2891 2.6954 5.3554 17 1 10.2076 2.8043 5.9128 18 6 8.2032 3.5118 5.6405 19 7 7.1523 3.5097 4.8481 20 14 8.2334 4.6133 7.1489 21 1 8.7079 5.9668 6.7640 22 1 6.8652 4.7116 7.7177 23 1 9.1515 4.0372 8.1642 24 6 7.9593 1.3619 3.6825 25 6 8.2260 0.0031 3.0063 26 1 7.8942 -0.8299 3.6260 27 6 3.5805 -1.1972 -0.0029 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1324 0.0001 34 1 6.1425 0.8896 -0.5111 35 1 6.1424 -0.8904 -0.5099 36 1 8.8742 -1.0150 0.3181 37 1 8.3785 0.6266 -0.1959 38 1 9.8684 1.6957 1.4016 39 1 10.8509 0.2773 0.9036 40 1 10.7958 0.4163 4.6341 41 1 11.0384 1.6438 3.3639 42 1 6.3937 4.0804 5.0472 43 1 7.1493 1.2642 4.4055 44 1 7.6990 2.1084 2.9322 45 1 4.1205 -2.1325 -0.0063 46 1 1.6581 -2.1324 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076005890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:23 Heat of formation + Delta-G solvation = -3.790959 kcal Electronic energy + Delta-G solvation = -26330.694026 eV Core-core repulsion = 22798.640058 eV Total energy + Delta-G solvation = -3532.053968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53276 -40.36017 -39.10678 -36.59708 -34.72635 -34.07820 -32.23851 -31.80773 -31.06290 -29.95097 -28.31642 -26.66135 -26.01696 -23.85974 -23.63237 -22.44589 -21.82985 -20.91612 -19.98858 -18.91778 -18.09581 -17.39001 -16.96317 -16.70880 -16.29758 -16.21196 -15.91023 -15.69309 -15.08659 -14.99265 -14.53742 -14.46652 -14.28567 -14.09127 -13.70810 -13.65597 -13.42502 -13.38323 -13.27240 -12.89671 -12.82364 -12.73867 -12.69476 -12.58107 -12.19647 -12.01389 -11.88945 -11.81856 -11.66069 -11.50606 -11.46745 -10.87449 -10.72841 -9.80283 -9.57563 -9.38555 -8.91014 -7.90822 -5.29025 0.39047 0.52413 1.39434 1.43016 1.52530 1.71331 2.05757 2.45607 2.86087 3.27868 3.42315 3.61639 3.70951 3.77735 3.89238 4.00257 4.04512 4.10188 4.14782 4.28116 4.31030 4.40257 4.50372 4.51411 4.58493 4.60690 4.63772 4.75393 4.83689 4.85417 4.87038 4.94425 4.98174 5.12303 5.19229 5.20578 5.25733 5.29530 5.40860 5.49628 5.50193 5.54840 5.68734 5.70317 5.73944 6.14727 6.15447 6.66712 7.02663 7.28224 7.74643 8.37004 9.19017 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013292 B = 0.003832 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2106.050215 B = 7304.248198 C = 8976.519737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.123 4.123 5 C -0.086 4.086 6 C -0.083 4.083 7 C 0.516 3.484 8 O -0.585 6.585 9 N -0.611 5.611 10 C 0.098 3.902 11 C -0.114 4.114 12 C -0.092 4.092 13 H 0.131 0.869 14 C 0.135 3.865 15 N -0.624 5.624 16 C -0.248 4.248 17 H 0.087 0.913 18 C -0.068 4.068 19 N -0.949 5.949 20 Si 0.979 3.021 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.263 1.263 24 C 0.203 3.797 25 C 0.118 3.882 26 H 0.067 0.933 27 C -0.112 4.112 28 C -0.130 4.130 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.131 0.869 33 H 0.113 0.887 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.109 0.891 37 H 0.094 0.906 38 H 0.048 0.952 39 H 0.127 0.873 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.243 0.757 43 H -0.006 1.006 44 H -0.006 1.006 45 H 0.136 0.864 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 -11.986 -17.585 21.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.154 4.154 4 C -0.141 4.141 5 C -0.087 4.087 6 C -0.122 4.122 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.345 5.345 10 C -0.023 4.023 11 C -0.152 4.152 12 C -0.111 4.111 13 H 0.148 0.852 14 C 0.010 3.990 15 N -0.350 5.350 16 C -0.377 4.377 17 H 0.105 0.895 18 C -0.261 4.261 19 N -0.597 5.597 20 Si 0.806 3.194 21 H -0.208 1.208 22 H -0.226 1.226 23 H -0.187 1.187 24 C 0.076 3.924 25 C 0.013 3.987 26 H 0.085 0.915 27 C -0.130 4.130 28 C -0.148 4.148 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.149 0.851 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.145 0.855 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.012 0.988 44 H 0.012 0.988 45 H 0.154 0.846 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.950 -11.846 -17.046 20.967 hybrid contribution -0.409 1.307 1.452 1.996 sum -3.359 -10.539 -15.594 19.119 Atomic orbital electron populations 1.20817 0.89251 1.03337 1.03258 1.20295 0.97655 0.92961 0.99069 1.21233 0.93952 0.98680 1.01526 1.21185 0.95150 0.97793 0.99962 1.19509 0.94543 0.93846 1.00790 1.20668 0.92350 1.07330 0.91839 1.21041 0.80547 0.75393 0.92430 1.90735 1.55755 1.51372 1.48546 1.48643 1.05506 1.72593 1.07739 1.22992 0.85637 1.03124 0.90547 1.23136 0.99245 0.99529 0.93299 1.22906 0.91550 1.00526 0.96164 0.85156 1.21302 0.90467 0.92603 0.94626 1.44473 1.03720 1.44080 1.42771 1.19457 0.99475 1.09579 1.09142 0.89531 1.25797 0.96931 1.01191 1.02212 1.70267 1.07629 1.42762 1.39007 0.85068 0.76562 0.78612 0.79137 1.20758 1.22579 1.18687 1.20778 0.87863 0.90949 0.92812 1.22507 0.94284 0.96906 0.84987 0.91513 1.21237 0.94882 0.97603 0.99284 1.21304 0.94100 0.98428 1.00962 0.89673 0.90653 0.91444 0.85130 0.86860 0.86561 0.84428 0.87309 0.88767 0.93288 0.85451 0.94998 0.94768 0.94772 0.98754 0.98778 0.84566 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.01 71.24 0.71 -1.16 16 2 C -0.10 -2.41 5.88 -19.86 -0.12 -2.53 16 3 C -0.14 -3.71 9.70 22.27 0.22 -3.49 16 4 C -0.12 -3.71 9.70 22.27 0.22 -3.50 16 5 C -0.09 -2.46 4.37 -19.87 -0.09 -2.55 16 6 C -0.08 -2.04 4.84 29.10 0.14 -1.90 16 7 C 0.52 18.84 7.67 87.66 0.67 19.52 16 8 O -0.58 -28.58 16.15 -3.02 -0.05 -28.63 16 9 N -0.61 -20.43 2.89 -780.14 -2.25 -22.69 16 10 C 0.10 2.04 6.72 87.55 0.59 2.63 16 11 C -0.11 -2.71 6.38 32.54 0.21 -2.50 16 12 C -0.09 -2.81 3.85 -9.31 -0.04 -2.85 16 13 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 14 C 0.13 5.39 6.66 86.45 0.58 5.97 16 15 N -0.62 -33.79 3.37 -698.85 -2.36 -36.15 16 16 C -0.25 -14.59 10.21 84.03 0.86 -13.73 16 17 H 0.09 4.79 7.85 -2.91 -0.02 4.76 16 18 C -0.07 -4.14 5.41 84.86 0.46 -3.68 16 19 N -0.95 -62.61 10.60 21.65 0.23 -62.38 16 20 Si 0.98 48.39 29.56 68.60 2.03 50.42 16 21 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 23 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 24 C 0.20 11.11 4.58 86.73 0.40 11.51 16 25 C 0.12 4.77 3.84 46.00 0.18 4.95 16 26 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 27 C -0.11 -2.86 9.70 22.27 0.22 -2.64 16 28 C -0.13 -3.07 9.70 22.27 0.22 -2.86 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.12 8.09 -2.38 -0.02 1.10 16 31 H 0.07 1.12 8.09 -2.38 -0.02 1.10 16 32 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 34 H 0.12 2.46 7.79 -2.39 -0.02 2.44 16 35 H 0.14 2.23 8.08 -2.39 -0.02 2.21 16 36 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 1.59 7.48 -2.39 -0.02 1.57 16 38 H 0.05 1.52 7.89 -2.38 -0.02 1.50 16 39 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.03 1.32 7.73 -2.39 -0.02 1.31 16 42 H 0.24 15.75 8.31 -92.71 -0.77 14.98 16 43 H -0.01 -0.40 7.25 -2.38 -0.02 -0.42 16 44 H -0.01 -0.36 7.59 -2.39 -0.02 -0.37 16 45 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 46 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -87.36 370.34 3.96 -83.40 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.95 Total: 14.83 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.41 Total: 1.19 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -4.38 Total: -121.21 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.05 Total: -28.63 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -87.36 3.96 -83.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076005890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.613 kcal (2) G-P(sol) polarization free energy of solvation -87.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds