Wall clock time and date at job start Fri Apr 10 2020 23:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 C 1.37983 * 120.07744 * 262.68693 * 3 2 1 5 5 C 1.38334 * 120.14795 * 180.23628 * 4 3 2 6 6 C 1.38379 * 120.29135 * 359.78626 * 5 4 3 7 7 C 1.37936 * 120.14851 * 359.95637 * 6 5 4 8 8 C 1.39556 * 120.07487 * 82.43517 * 3 2 1 9 9 C 1.47850 * 120.14606 * 0.02562 * 8 3 2 10 10 O 1.21553 * 119.99698 * 43.90568 * 9 8 3 11 11 N 1.34771 * 120.00103 * 223.91501 * 9 8 3 12 12 C 1.47349 * 125.53341 * 354.90950 * 11 9 8 13 13 C 1.54930 * 104.89432 * 156.57904 * 12 11 9 14 14 C 1.54806 * 101.50213 * 37.23850 * 13 12 11 15 15 H 1.08989 * 113.15646 * 85.61043 * 14 13 12 16 16 C 1.53260 * 109.74621 * 212.29391 * 14 13 12 17 17 N 1.46584 * 108.16132 * 95.76500 * 16 14 13 18 18 C 1.36937 * 125.30872 * 177.84792 * 17 16 14 19 19 H 1.08003 * 120.00119 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00357 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99802 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47192 * 59.99751 * 22 20 18 24 24 H 1.48503 * 109.46979 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46916 * 299.99750 * 22 20 18 26 26 C 1.46601 * 109.38672 * 357.88088 * 17 16 14 27 27 C 1.47219 * 125.52677 * 174.95537 * 11 9 8 28 28 H 1.09001 * 112.72513 * 55.93130 * 27 11 9 29 29 H 1.09005 * 109.47023 * 59.99665 * 1 2 3 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47358 * 300.00144 * 1 2 3 32 32 H 1.09000 * 109.46986 * 240.00222 * 2 1 3 33 33 H 1.09004 * 109.46989 * 119.99780 * 2 1 3 34 34 H 1.08008 * 119.92272 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.85526 * 179.77017 * 5 4 3 36 36 H 1.07999 * 119.92574 * 179.97438 * 6 5 4 37 37 H 1.07994 * 120.07609 * 180.02562 * 7 6 5 38 38 H 1.08999 * 110.35356 * 275.43684 * 12 11 9 39 39 H 1.08997 * 110.35234 * 37.61748 * 12 11 9 40 40 H 1.08997 * 111.02274 * 279.18006 * 13 12 11 41 41 H 1.09005 * 111.01973 * 155.28895 * 13 12 11 42 42 H 1.09008 * 109.73768 * 215.44465 * 16 14 13 43 43 H 1.08999 * 109.74033 * 336.07806 * 16 14 13 44 44 H 0.97001 * 119.99807 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.91561 * 137.16988 * 26 17 16 46 46 H 1.08998 * 109.91627 * 258.26202 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4060 2.0222 -1.1843 5 6 2.8719 3.3247 -1.1854 6 6 2.9622 4.0347 -0.0010 7 6 2.5868 3.4472 1.1892 8 6 2.1155 2.1332 1.1972 9 6 1.7120 1.4970 2.4693 10 8 2.0561 0.3573 2.7148 11 7 0.9626 2.1806 3.3567 12 6 0.5677 3.5949 3.2343 13 6 -0.7078 3.7289 4.1034 14 6 -0.3733 2.7916 5.2892 15 1 0.2010 3.2825 6.0747 16 6 -1.6587 2.1447 5.8164 17 7 -1.7983 0.8276 5.1882 18 6 -2.8028 -0.0678 5.4418 19 1 -3.5760 0.1759 6.1554 20 6 -2.8280 -1.2882 4.7810 21 7 -1.8860 -1.5850 3.9110 22 14 -4.1987 -2.5094 5.1265 23 1 -5.5072 -1.8927 4.7910 24 1 -3.9977 -3.7262 4.2993 25 1 -4.1804 -2.8803 6.5644 26 6 -0.6943 0.6182 4.2466 27 6 0.4064 1.6356 4.6061 28 1 1.1702 1.2082 5.2558 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3379 1.4735 -2.1121 35 1 3.1667 3.7895 -2.1146 36 1 3.3272 5.0511 -0.0086 37 1 2.6574 4.0025 2.1127 38 1 1.3565 4.2431 3.6160 39 1 0.3476 3.8385 2.1949 40 1 -1.5873 3.3780 3.5637 41 1 -0.8435 4.7558 4.4430 42 1 -1.5966 2.0314 6.8988 43 1 -2.5160 2.7673 5.5604 44 1 -1.9033 -2.4380 3.4495 45 1 -0.3087 -0.3965 4.3463 46 1 -1.0397 0.7853 3.2264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076189293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:26 Heat of formation + Delta-G solvation = 24.922105 kcal Electronic energy + Delta-G solvation = -27482.696430 eV Core-core repulsion = 23951.887554 eV Total energy + Delta-G solvation = -3530.808876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.50987 -39.08499 -37.38934 -35.03251 -33.82509 -32.39132 -31.10743 -30.61409 -29.31959 -28.48336 -26.75808 -24.63377 -24.08566 -23.39759 -22.16135 -21.23861 -20.32227 -19.59836 -18.78374 -17.28682 -16.76554 -16.04442 -15.72693 -15.58400 -15.15541 -14.50429 -14.28719 -13.91115 -13.72191 -13.65205 -13.34676 -13.20735 -12.90679 -12.67161 -12.61651 -12.21030 -12.02495 -11.92792 -11.59058 -11.53612 -11.47732 -11.13955 -11.03166 -10.77638 -10.70844 -10.64880 -10.43419 -10.18283 -10.01409 -9.74874 -9.67503 -9.30407 -8.92439 -8.67511 -8.56486 -8.15375 -6.79122 -5.60181 -3.02051 1.03630 1.34060 3.04983 3.31000 3.43374 3.47442 3.49384 3.83541 4.52293 4.59177 4.76549 4.81992 4.84741 4.92841 5.05519 5.20471 5.29020 5.41948 5.47084 5.55569 5.57801 5.61321 5.70359 5.73042 5.76155 5.82798 5.88177 5.94732 6.04474 6.06746 6.21742 6.23312 6.30200 6.36445 6.39683 6.42526 6.54361 6.62416 6.66934 6.72146 6.76961 6.89835 6.91263 7.57505 7.66661 7.91345 8.00392 8.39985 8.58430 9.27197 9.88030 10.50302 11.44028 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.004755 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.086647 B = 5886.717665 C = 7118.676526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C -0.023 4.023 4 C -0.128 4.128 5 C -0.102 4.102 6 C -0.136 4.136 7 C -0.090 4.090 8 C -0.119 4.119 9 C 0.572 3.428 10 O -0.520 6.520 11 N -0.601 5.601 12 C 0.100 3.900 13 C -0.122 4.122 14 C -0.110 4.110 15 H 0.087 0.913 16 C 0.145 3.855 17 N -0.601 5.601 18 C -0.233 4.233 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.913 5.913 22 Si 0.912 3.088 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.166 3.834 27 C 0.113 3.887 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.253 0.747 45 H 0.095 0.905 46 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.929 13.637 -7.964 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.144 4.144 3 C -0.024 4.024 4 C -0.146 4.146 5 C -0.120 4.120 6 C -0.154 4.154 7 C -0.109 4.109 8 C -0.122 4.122 9 C 0.361 3.639 10 O -0.396 6.396 11 N -0.334 5.334 12 C -0.023 4.023 13 C -0.160 4.160 14 C -0.129 4.129 15 H 0.105 0.895 16 C 0.019 3.981 17 N -0.328 5.328 18 C -0.361 4.361 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.560 5.560 22 Si 0.742 3.258 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.041 3.959 27 C 0.010 3.990 28 H 0.101 0.899 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.123 0.877 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.145 0.855 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.064 0.936 45 H 0.113 0.887 46 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 9.090 12.744 -7.956 17.559 hybrid contribution -0.722 -0.411 0.070 0.834 sum 8.368 12.333 -7.886 16.861 Atomic orbital electron populations 1.21634 0.93822 1.02522 1.01551 1.20903 0.96973 0.91959 1.04523 1.20027 0.94556 0.96324 0.91466 1.21022 1.00696 0.95403 0.97451 1.21250 0.98249 0.94443 0.98090 1.21011 1.01853 1.00120 0.92410 1.21360 0.97476 0.93408 0.98633 1.19848 1.03929 0.94806 0.93614 1.17852 0.78116 0.85314 0.82640 1.90761 1.54696 1.17386 1.76798 1.48435 1.51216 1.11696 1.22094 1.22420 0.96565 0.82668 1.00644 1.22801 0.97479 0.99555 0.96181 1.22870 0.97562 0.95627 0.96839 0.89451 1.20987 0.93304 0.88059 0.95791 1.44146 1.27885 1.13448 1.47308 1.18970 1.01840 0.95085 1.20215 0.90482 1.24821 0.98633 0.97953 0.98789 1.69912 1.33455 1.23090 1.29542 0.86211 0.81302 0.80761 0.77526 1.21256 1.21587 1.21145 1.21658 0.84727 0.97797 0.91738 1.22975 0.96310 0.95769 0.83952 0.89857 0.93622 0.91889 0.92107 0.91476 0.87667 0.85649 0.85964 0.85806 0.85524 0.91828 0.90824 0.89917 0.90364 0.95898 0.95713 0.93626 0.88680 0.96165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.87 37.16 0.37 -1.97 16 2 C -0.11 -1.70 5.53 -27.88 -0.15 -1.85 16 3 C -0.02 -0.34 5.16 -104.22 -0.54 -0.88 16 4 C -0.13 -1.52 9.66 -39.64 -0.38 -1.90 16 5 C -0.10 -1.04 10.04 -39.49 -0.40 -1.43 16 6 C -0.14 -1.39 10.03 -39.64 -0.40 -1.79 16 7 C -0.09 -1.11 8.03 -39.18 -0.31 -1.42 16 8 C -0.12 -1.85 5.32 -104.96 -0.56 -2.41 16 9 C 0.57 10.80 6.34 -12.33 -0.08 10.72 16 10 O -0.52 -11.74 14.79 5.32 0.08 -11.67 16 11 N -0.60 -10.61 2.85 -162.77 -0.46 -11.07 16 12 C 0.10 1.34 5.30 -2.56 -0.01 1.33 16 13 C -0.12 -1.72 6.23 -24.76 -0.15 -1.87 16 14 C -0.11 -1.82 3.91 -88.33 -0.35 -2.16 16 15 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 16 C 0.14 2.95 6.65 -3.86 -0.03 2.92 16 17 N -0.60 -15.49 3.37 -172.22 -0.58 -16.08 16 18 C -0.23 -6.55 10.25 -15.06 -0.15 -6.70 16 19 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 20 C -0.01 -0.15 5.48 -17.43 -0.10 -0.25 16 21 N -0.91 -27.35 10.17 55.49 0.56 -26.79 16 22 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 C 0.17 4.20 4.89 -3.39 -0.02 4.18 16 27 C 0.11 2.26 3.86 -65.74 -0.25 2.01 16 28 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 1.22 7.65 -51.93 -0.40 0.82 16 32 H 0.07 0.89 8.03 -51.93 -0.42 0.48 16 33 H 0.11 2.00 5.63 -51.93 -0.29 1.71 16 34 H 0.13 1.23 8.05 -52.48 -0.42 0.80 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 37 H 0.13 1.35 6.21 -52.49 -0.33 1.03 16 38 H 0.06 0.69 7.35 -51.93 -0.38 0.31 16 39 H 0.07 0.93 6.90 -51.93 -0.36 0.58 16 40 H 0.08 1.36 7.88 -51.93 -0.41 0.95 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 43 H 0.03 0.49 7.74 -51.93 -0.40 0.09 16 44 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.10 2.82 6.23 -51.93 -0.32 2.50 16 46 H 0.02 0.56 7.95 -51.93 -0.41 0.15 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -32.85 359.33 -10.59 -43.45 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.07 Total: 2.84 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.51 Total: -3.48 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -0.48 Total: -53.93 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.67 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.85 -10.59 -43.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076189293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.370 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds