Wall clock time and date at job start Fri Apr 10 2020 23:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50700 * 109.46884 * 2 1 4 4 C 1.37983 * 120.07744 * 262.68693 * 3 2 1 5 5 C 1.38334 * 120.14795 * 180.23628 * 4 3 2 6 6 C 1.38379 * 120.29135 * 359.78626 * 5 4 3 7 7 C 1.37936 * 120.14851 * 359.95637 * 6 5 4 8 8 C 1.39556 * 120.07487 * 82.43517 * 3 2 1 9 9 C 1.47850 * 120.14606 * 0.02562 * 8 3 2 10 10 O 1.21553 * 119.99698 * 43.90568 * 9 8 3 11 11 N 1.34771 * 120.00103 * 223.91501 * 9 8 3 12 12 C 1.47349 * 125.53341 * 354.90950 * 11 9 8 13 13 C 1.54930 * 104.89432 * 156.57904 * 12 11 9 14 14 C 1.54806 * 101.50213 * 37.23850 * 13 12 11 15 15 H 1.08989 * 113.15646 * 85.61043 * 14 13 12 16 16 C 1.53260 * 109.74621 * 212.29391 * 14 13 12 17 17 N 1.46584 * 108.16132 * 95.76500 * 16 14 13 18 18 C 1.36937 * 125.30872 * 177.84792 * 17 16 14 19 19 H 1.08003 * 120.00119 * 0.02562 * 18 17 16 20 20 C 1.38810 * 120.00357 * 179.97438 * 18 17 16 21 21 N 1.31623 * 119.99802 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47192 * 59.99751 * 22 20 18 24 24 H 1.48503 * 109.46979 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46916 * 299.99750 * 22 20 18 26 26 C 1.46601 * 109.38672 * 357.88088 * 17 16 14 27 27 C 1.47219 * 125.52677 * 174.95537 * 11 9 8 28 28 H 1.09001 * 112.72513 * 55.93130 * 27 11 9 29 29 H 1.09005 * 109.47023 * 59.99665 * 1 2 3 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47358 * 300.00144 * 1 2 3 32 32 H 1.09000 * 109.46986 * 240.00222 * 2 1 3 33 33 H 1.09004 * 109.46989 * 119.99780 * 2 1 3 34 34 H 1.08008 * 119.92272 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.85526 * 179.77017 * 5 4 3 36 36 H 1.07999 * 119.92574 * 179.97438 * 6 5 4 37 37 H 1.07994 * 120.07609 * 180.02562 * 7 6 5 38 38 H 1.08999 * 110.35356 * 275.43684 * 12 11 9 39 39 H 1.08997 * 110.35234 * 37.61748 * 12 11 9 40 40 H 1.08997 * 111.02274 * 279.18006 * 13 12 11 41 41 H 1.09005 * 111.01973 * 155.28895 * 13 12 11 42 42 H 1.09008 * 109.73768 * 215.44465 * 16 14 13 43 43 H 1.08999 * 109.74033 * 336.07806 * 16 14 13 44 44 H 0.97001 * 119.99807 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.91561 * 137.16988 * 26 17 16 46 46 H 1.08998 * 109.91627 * 258.26202 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4060 2.0222 -1.1843 5 6 2.8719 3.3247 -1.1854 6 6 2.9622 4.0347 -0.0010 7 6 2.5868 3.4472 1.1892 8 6 2.1155 2.1332 1.1972 9 6 1.7120 1.4970 2.4693 10 8 2.0561 0.3573 2.7148 11 7 0.9626 2.1806 3.3567 12 6 0.5677 3.5949 3.2343 13 6 -0.7078 3.7289 4.1034 14 6 -0.3733 2.7916 5.2892 15 1 0.2010 3.2825 6.0747 16 6 -1.6587 2.1447 5.8164 17 7 -1.7983 0.8276 5.1882 18 6 -2.8028 -0.0678 5.4418 19 1 -3.5760 0.1759 6.1554 20 6 -2.8280 -1.2882 4.7810 21 7 -1.8860 -1.5850 3.9110 22 14 -4.1987 -2.5094 5.1265 23 1 -5.5072 -1.8927 4.7910 24 1 -3.9977 -3.7262 4.2993 25 1 -4.1804 -2.8803 6.5644 26 6 -0.6943 0.6182 4.2466 27 6 0.4064 1.6356 4.6061 28 1 1.1702 1.2082 5.2558 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3379 1.4735 -2.1121 35 1 3.1667 3.7895 -2.1146 36 1 3.3272 5.0511 -0.0086 37 1 2.6574 4.0025 2.1127 38 1 1.3565 4.2431 3.6160 39 1 0.3476 3.8385 2.1949 40 1 -1.5873 3.3780 3.5637 41 1 -0.8435 4.7558 4.4430 42 1 -1.5966 2.0314 6.8988 43 1 -2.5160 2.7673 5.5604 44 1 -1.9033 -2.4380 3.4495 45 1 -0.3087 -0.3965 4.3463 46 1 -1.0397 0.7853 3.2264 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076189293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:25 Heat of formation + Delta-G solvation = 4.879131 kcal Electronic energy + Delta-G solvation = -27483.565558 eV Core-core repulsion = 23951.887554 eV Total energy + Delta-G solvation = -3531.678004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.83159 -40.33224 -38.78609 -36.74075 -35.03028 -34.16049 -32.46621 -32.00974 -30.46324 -30.16332 -28.37357 -26.54123 -25.40951 -24.52653 -23.30505 -22.60969 -21.97490 -20.92590 -20.21858 -18.94731 -18.40340 -17.24780 -17.12421 -16.78404 -16.60137 -16.24197 -15.59642 -15.34507 -15.11205 -14.97184 -14.78695 -14.45949 -14.30026 -14.11129 -13.97892 -13.77845 -13.48514 -13.22756 -13.12457 -12.99521 -12.84400 -12.69559 -12.63529 -12.39033 -12.23767 -12.09002 -11.87853 -11.79033 -11.70590 -11.51925 -11.41811 -10.75123 -10.70915 -9.87388 -9.68792 -9.58231 -8.92152 -7.79515 -5.25047 0.04508 0.43739 1.41003 1.45581 1.52134 1.70640 2.03866 2.47021 2.83909 3.29495 3.34516 3.59216 3.67383 3.77626 3.82552 3.90381 4.00875 4.12847 4.28312 4.29979 4.33852 4.39984 4.46688 4.49282 4.52389 4.54147 4.57593 4.67566 4.81378 4.87170 4.89566 4.94648 5.07015 5.09091 5.14216 5.15802 5.18090 5.30941 5.42857 5.45159 5.48015 5.53083 5.57304 5.65835 5.79252 6.02288 6.23281 6.58358 7.05911 7.18031 7.77430 8.38151 9.22182 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015904 B = 0.004755 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.086647 B = 5886.717665 C = 7118.676526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.102 4.102 3 C -0.049 4.049 4 C -0.128 4.128 5 C -0.090 4.090 6 C -0.124 4.124 7 C -0.089 4.089 8 C -0.147 4.147 9 C 0.563 3.437 10 O -0.578 6.578 11 N -0.603 5.603 12 C 0.098 3.902 13 C -0.114 4.114 14 C -0.092 4.092 15 H 0.131 0.869 16 C 0.136 3.864 17 N -0.624 5.624 18 C -0.246 4.246 19 H 0.088 0.912 20 C -0.068 4.068 21 N -0.946 5.946 22 Si 0.980 3.020 23 H -0.273 1.273 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.189 3.811 27 C 0.116 3.884 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.016 0.984 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.145 0.855 38 H 0.108 0.892 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.129 0.871 42 H 0.031 0.969 43 H 0.037 0.963 44 H 0.242 0.758 45 H 0.036 0.964 46 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.702 18.305 -8.917 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.139 4.139 3 C -0.050 4.050 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.142 4.142 7 C -0.107 4.107 8 C -0.150 4.150 9 C 0.354 3.646 10 O -0.459 6.459 11 N -0.336 5.336 12 C -0.023 4.023 13 C -0.151 4.151 14 C -0.111 4.111 15 H 0.149 0.851 16 C 0.011 3.989 17 N -0.351 5.351 18 C -0.375 4.375 19 H 0.106 0.894 20 C -0.261 4.261 21 N -0.595 5.595 22 Si 0.808 3.192 23 H -0.199 1.199 24 H -0.225 1.225 25 H -0.199 1.199 26 C 0.063 3.937 27 C 0.011 3.989 28 H 0.087 0.913 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.035 0.965 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.164 0.836 35 H 0.179 0.821 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.126 0.874 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.147 0.853 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.054 0.946 46 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges 9.845 17.493 -8.884 21.951 hybrid contribution -0.960 -1.825 0.339 2.090 sum 8.885 15.668 -8.545 19.936 Atomic orbital electron populations 1.21515 0.95231 1.01154 1.00545 1.20750 0.95697 0.93826 1.03615 1.20014 0.96674 0.95477 0.92870 1.21281 1.00004 0.96552 0.96770 1.21743 0.95925 0.93330 0.99828 1.21489 0.99811 1.01619 0.91239 1.21580 0.96762 0.91761 1.00615 1.19737 1.06759 0.96710 0.91759 1.18636 0.77431 0.84791 0.83770 1.90723 1.57107 1.20022 1.78028 1.48537 1.50484 1.13572 1.20959 1.22764 0.97512 0.80377 1.01616 1.22816 0.96422 1.01336 0.94553 1.22924 0.95167 0.94528 0.98454 0.85073 1.21274 0.95811 0.85849 0.95930 1.44466 1.27509 1.15511 1.47596 1.19453 1.02508 0.95680 1.19836 0.89411 1.25756 1.01193 1.00118 0.99018 1.70266 1.35516 1.22854 1.30873 0.85130 0.78657 0.77871 0.77550 1.19899 1.22467 1.19906 1.21111 0.86142 0.96611 0.89836 1.22648 0.94540 0.96246 0.85495 0.91344 0.90819 0.93498 0.96498 0.88851 0.91952 0.83570 0.82064 0.81787 0.83722 0.87439 0.89828 0.93191 0.85298 0.95059 0.94556 0.94852 0.94551 1.00340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.76 9.87 71.98 0.71 -4.05 16 2 C -0.10 -3.51 5.53 29.85 0.17 -3.35 16 3 C -0.05 -1.48 5.16 -19.61 -0.10 -1.58 16 4 C -0.13 -2.70 9.66 22.23 0.21 -2.49 16 5 C -0.09 -1.39 10.04 22.33 0.22 -1.16 16 6 C -0.12 -1.89 10.03 22.23 0.22 -1.66 16 7 C -0.09 -1.91 8.03 22.53 0.18 -1.73 16 8 C -0.15 -4.59 5.32 -20.09 -0.11 -4.70 16 9 C 0.56 22.70 6.34 86.79 0.55 23.25 16 10 O -0.58 -29.16 14.79 -3.88 -0.06 -29.22 16 11 N -0.60 -21.91 2.85 -787.18 -2.25 -24.15 16 12 C 0.10 2.38 5.30 86.88 0.46 2.84 16 13 C -0.11 -2.86 6.23 31.87 0.20 -2.67 16 14 C -0.09 -2.88 3.91 -9.31 -0.04 -2.92 16 15 H 0.13 3.08 8.14 -2.39 -0.02 3.06 16 16 C 0.14 5.48 6.65 86.45 0.58 6.06 16 17 N -0.62 -33.76 3.37 -698.78 -2.36 -36.12 16 18 C -0.25 -14.40 10.25 84.03 0.86 -13.54 16 19 H 0.09 4.81 7.83 -2.91 -0.02 4.79 16 20 C -0.07 -4.10 5.48 84.86 0.47 -3.63 16 21 N -0.95 -61.69 10.17 21.65 0.22 -61.47 16 22 Si 0.98 48.07 29.55 68.60 2.03 50.09 16 23 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 24 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 25 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 26 C 0.19 10.42 4.89 86.75 0.42 10.84 16 27 C 0.12 4.83 3.86 46.02 0.18 5.00 16 28 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 29 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.02 0.74 7.65 -2.39 -0.02 0.72 16 32 H 0.09 2.60 8.03 -2.39 -0.02 2.58 16 33 H 0.06 2.70 5.63 -2.38 -0.01 2.68 16 34 H 0.15 2.39 8.05 -2.91 -0.02 2.36 16 35 H 0.16 1.28 8.06 -2.91 -0.02 1.26 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 37 H 0.15 2.48 6.21 -2.91 -0.02 2.46 16 38 H 0.11 1.74 7.35 -2.39 -0.02 1.73 16 39 H 0.08 1.90 6.90 -2.39 -0.02 1.88 16 40 H 0.05 1.60 7.88 -2.39 -0.02 1.59 16 41 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.04 1.40 7.74 -2.39 -0.02 1.38 16 44 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.04 2.41 6.23 -2.38 -0.01 2.39 16 46 H -0.02 -1.32 7.95 -2.39 -0.02 -1.34 16 Total: -1.00 -84.54 359.33 3.74 -80.80 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.97 Total: 15.55 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: 5.19 Total: 4.53 kcal Atomic # 7 Polarization: -117.36 SS G_CDS: -4.38 Total: -121.75 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.06 Total: -29.22 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.03 Total: 50.09 kcal Total: -84.54 3.74 -80.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076189293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.679 kcal (2) G-P(sol) polarization free energy of solvation -84.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds