Wall clock time and date at job start Fri Apr 10 2020 23:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 120.00288 * 2 1 4 4 C 1.38213 * 120.00379 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99858 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00205 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00022 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47068 * 90.00272 * 7 6 5 9 9 O 1.21280 * 119.99930 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00195 * 179.97438 * 8 7 6 11 11 C 1.47414 * 125.58612 * 0.02562 * 10 8 7 12 12 C 1.53762 * 105.10260 * 203.82789 * 11 10 8 13 13 C 1.55171 * 102.23937 * 323.64956 * 12 11 10 14 14 H 1.09001 * 113.90349 * 157.57001 * 13 12 11 15 15 C 1.53754 * 108.31119 * 284.48393 * 13 12 11 16 16 N 1.46587 * 108.10917 * 124.37812 * 15 13 12 17 17 C 1.36935 * 125.31116 * 181.24510 * 16 15 13 18 18 H 1.08002 * 119.99932 * 9.48344 * 17 16 15 19 19 C 1.38817 * 119.99893 * 189.75601 * 17 16 15 20 20 N 1.31611 * 119.99693 * 8.54342 * 19 17 16 21 21 Si 1.86801 * 119.99791 * 188.53911 * 19 17 16 22 22 H 1.48501 * 109.47041 * 94.40746 * 21 19 17 23 23 H 1.48503 * 109.46860 * 214.40783 * 21 19 17 24 24 H 1.48497 * 109.47241 * 334.40481 * 21 19 17 25 25 C 1.46714 * 109.37811 * 1.50798 * 16 15 13 26 26 C 1.46703 * 125.58991 * 179.97438 * 10 8 7 27 27 H 1.09006 * 111.52986 * 56.12649 * 26 10 8 28 28 C 1.38214 * 119.99945 * 180.27408 * 2 1 3 29 29 H 1.08999 * 109.46817 * 90.00543 * 1 2 3 30 30 H 1.09008 * 109.47187 * 210.00005 * 1 2 3 31 31 H 1.09000 * 109.47285 * 330.00093 * 1 2 3 32 32 H 1.08001 * 119.99719 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.00054 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00014 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47436 * 330.00375 * 7 6 5 36 36 H 1.09003 * 109.46947 * 210.00328 * 7 6 5 37 37 H 1.08996 * 110.36662 * 323.21236 * 11 10 8 38 38 H 1.08995 * 110.36639 * 85.43124 * 11 10 8 39 39 H 1.09001 * 111.50593 * 205.01606 * 12 11 10 40 40 H 1.09002 * 109.95985 * 81.58643 * 12 11 10 41 41 H 1.08996 * 109.74314 * 4.70160 * 15 13 12 42 42 H 1.09002 * 109.74053 * 244.04477 * 15 13 12 43 43 H 0.97006 * 119.99880 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.98913 * 101.17745 * 25 16 15 45 45 H 1.09000 * 109.98634 * 222.48733 * 25 16 15 46 46 H 1.07998 * 120.00382 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1970 0.0005 7 6 4.3342 -2.5021 0.0000 8 6 4.5869 -2.9368 1.4206 9 8 4.1935 -2.2543 2.3427 10 7 5.2493 -4.0845 1.6664 11 6 5.7794 -5.0049 0.6442 12 6 5.8752 -6.3700 1.3452 13 6 6.2996 -5.9720 2.7837 14 1 6.0587 -6.7208 3.5384 15 6 7.7895 -5.5929 2.7604 16 7 7.9237 -4.2391 3.3063 17 6 9.0990 -3.5465 3.4248 18 1 9.9993 -3.9280 2.9662 19 6 9.1345 -2.3568 4.1393 20 7 8.0872 -1.9795 4.8414 21 14 10.6686 -1.2916 4.1041 22 1 10.5283 -0.2562 3.0488 23 1 10.8443 -0.6331 5.4235 24 1 11.8528 -2.1387 3.8121 25 6 6.6033 -3.7445 3.7116 26 6 5.5619 -4.6221 2.9951 27 1 4.6625 -4.7457 3.5984 28 6 2.1980 -1.1970 -0.0057 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3517 0.0000 -0.0014 35 1 5.2860 -2.3719 -0.5149 36 1 3.7445 -3.2618 -0.5131 37 1 5.1018 -5.0562 -0.2080 38 1 6.7698 -4.6839 0.3217 39 1 6.6269 -7.0069 0.8788 40 1 4.8999 -6.8569 1.3467 41 1 8.1590 -5.6150 1.7352 42 1 8.3575 -6.2944 3.3715 43 1 8.1118 -1.1479 5.3404 44 1 6.4881 -3.8320 4.7919 45 1 6.4854 -2.7046 3.4070 46 1 1.6581 -2.1323 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076197784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:28 Heat of formation + Delta-G solvation = 17.186998 kcal Electronic energy + Delta-G solvation = -26669.404639 eV Core-core repulsion = 23138.260343 eV Total energy + Delta-G solvation = -3531.144295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.24178 -39.27887 -37.60360 -34.72068 -33.38038 -32.22582 -31.80025 -30.85392 -29.07460 -27.65585 -26.78931 -26.13494 -24.62630 -22.68678 -21.99037 -21.15728 -20.32587 -19.47194 -18.37311 -17.03929 -16.54876 -16.37255 -15.83301 -15.45290 -15.01784 -14.71637 -14.32001 -14.03125 -13.80579 -13.69445 -13.30942 -13.05119 -12.92739 -12.76946 -12.66494 -12.35155 -12.07781 -11.97562 -11.74697 -11.63483 -11.49164 -11.16895 -11.00024 -10.91890 -10.86782 -10.72159 -10.48545 -10.26596 -10.08718 -9.85528 -9.69020 -9.34547 -8.65439 -8.53040 -8.44202 -8.07169 -6.73739 -5.67344 -3.02139 1.45711 1.53049 3.12763 3.41789 3.42702 3.46747 3.49814 3.92865 4.52015 4.72443 4.75048 4.84417 4.85736 4.97158 5.11476 5.20441 5.24711 5.32294 5.36882 5.50916 5.51939 5.54025 5.57339 5.62413 5.65548 5.75410 5.77727 5.80304 5.80988 5.89448 6.04796 6.15668 6.21748 6.26093 6.36980 6.53149 6.58830 6.61672 6.65644 6.69403 6.74334 6.90286 7.13852 7.60727 7.64287 7.89674 8.05869 8.34421 8.70279 9.25673 9.87936 10.52934 11.44012 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.004378 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.883576 B = 6394.809393 C = 7957.143122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.106 4.106 6 C -0.055 4.055 7 C -0.098 4.098 8 C 0.528 3.472 9 O -0.524 6.524 10 N -0.601 5.601 11 C 0.102 3.898 12 C -0.123 4.123 13 C -0.109 4.109 14 H 0.096 0.904 15 C 0.142 3.858 16 N -0.598 5.598 17 C -0.236 4.236 18 H 0.075 0.925 19 C -0.003 4.003 20 N -0.911 5.911 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.281 1.281 25 C 0.172 3.828 26 C 0.114 3.886 27 H 0.077 0.923 28 C -0.107 4.107 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.020 0.980 43 H 0.253 0.747 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.365 -3.178 -13.401 18.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.133 4.133 5 C -0.124 4.124 6 C -0.056 4.056 7 C -0.138 4.138 8 C 0.316 3.684 9 O -0.400 6.400 10 N -0.336 5.336 11 C -0.021 4.021 12 C -0.161 4.161 13 C -0.128 4.128 14 H 0.114 0.886 15 C 0.016 3.984 16 N -0.325 5.325 17 C -0.364 4.364 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.557 5.557 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.046 3.954 26 C 0.010 3.990 27 H 0.094 0.906 28 C -0.125 4.125 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.042 0.958 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.055 0.945 45 H 0.089 0.911 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.548 -2.536 -12.802 18.104 hybrid contribution 1.009 0.553 0.116 1.156 sum -11.539 -1.983 -12.686 17.263 Atomic orbital electron populations 1.20756 0.91450 1.02688 1.01896 1.19810 0.95814 0.93152 1.00306 1.20960 0.94266 0.97265 1.01794 1.21067 0.94248 0.97888 1.00060 1.21030 1.00000 0.92002 0.99414 1.19282 0.93422 0.93758 0.99091 1.20662 1.01902 0.95743 0.95485 1.19946 0.77972 0.79670 0.90823 1.90751 1.50875 1.52254 1.46119 1.48299 1.55604 1.21931 1.07766 1.22070 0.99232 0.89531 0.91251 1.22584 1.01564 0.96113 0.95888 1.23048 0.97061 0.96352 0.96374 0.88569 1.21170 0.91922 0.88567 0.96733 1.44170 1.03806 1.11180 1.73308 1.18962 0.86919 1.02754 1.27753 0.90683 1.24841 0.97623 0.99129 0.98493 1.69976 1.28954 1.23587 1.33183 0.86165 0.82273 0.80668 0.77016 1.21680 1.21723 1.20610 1.21309 0.81474 0.96923 0.95661 1.22636 0.98233 0.94019 0.84136 0.90551 1.20796 0.93325 0.97438 1.00922 0.91488 0.91664 0.91712 0.86454 0.86164 0.86113 0.88198 0.88572 0.91313 0.91176 0.89913 0.91322 0.95843 0.96174 0.93644 0.94529 0.91084 0.86506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.05 10.01 36.00 0.36 -0.69 16 2 C -0.09 -1.15 5.88 -104.63 -0.62 -1.77 16 3 C -0.12 -1.58 9.70 -39.58 -0.38 -1.97 16 4 C -0.11 -1.57 10.05 -39.59 -0.40 -1.96 16 5 C -0.11 -1.62 9.70 -39.58 -0.38 -2.00 16 6 C -0.06 -0.82 4.37 -104.62 -0.46 -1.28 16 7 C -0.10 -1.37 4.83 -29.03 -0.14 -1.51 16 8 C 0.53 9.89 7.50 -10.99 -0.08 9.80 16 9 O -0.52 -12.23 15.78 5.56 0.09 -12.14 16 10 N -0.60 -10.69 3.04 -162.87 -0.50 -11.18 16 11 C 0.10 1.39 6.22 -3.15 -0.02 1.37 16 12 C -0.12 -1.52 6.22 -25.19 -0.16 -1.68 16 13 C -0.11 -1.78 4.25 -87.87 -0.37 -2.16 16 14 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 15 C 0.14 2.87 6.44 -3.60 -0.02 2.84 16 16 N -0.60 -15.44 3.38 -171.99 -0.58 -16.02 16 17 C -0.24 -6.68 10.21 -15.06 -0.15 -6.83 16 18 H 0.08 2.05 7.84 -52.49 -0.41 1.64 16 19 C 0.00 -0.10 5.42 -17.43 -0.09 -0.19 16 20 N -0.91 -28.04 10.56 55.49 0.59 -27.46 16 21 Si 0.91 22.68 29.56 -169.99 -5.03 17.65 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 25 C 0.17 4.41 4.95 -3.46 -0.02 4.39 16 26 C 0.11 2.24 3.62 -66.15 -0.24 2.01 16 27 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 28 C -0.11 -1.46 9.36 -39.58 -0.37 -1.83 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 31 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 32 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 33 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.10 1.28 8.09 -51.93 -0.42 0.86 16 36 H 0.10 1.04 7.78 -51.93 -0.40 0.63 16 37 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 38 H 0.07 1.04 7.55 -51.93 -0.39 0.65 16 39 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.02 0.46 6.84 -51.93 -0.36 0.10 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.04 1.04 7.80 -51.93 -0.41 0.64 16 45 H 0.07 2.12 6.34 -51.93 -0.33 1.79 16 46 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 367.46 15.07 5.54 5.54 Total: -1.00 -35.19 367.46 -10.74 -45.93 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.30 Total: 1.15 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -3.55 Total: -3.46 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.49 Total: -54.66 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.19 -10.74 -45.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076197784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.113 kcal (2) G-P(sol) polarization free energy of solvation -35.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds