Wall clock time and date at job start Fri Apr 10 2020 23:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38255 * 120.00288 * 2 1 4 4 C 1.38213 * 120.00379 * 180.02562 * 3 2 1 5 5 C 1.38253 * 119.99858 * 359.97438 * 4 3 2 6 6 C 1.38215 * 120.00205 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.00022 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47068 * 90.00272 * 7 6 5 9 9 O 1.21280 * 119.99930 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00195 * 179.97438 * 8 7 6 11 11 C 1.47414 * 125.58612 * 0.02562 * 10 8 7 12 12 C 1.53762 * 105.10260 * 203.82789 * 11 10 8 13 13 C 1.55171 * 102.23937 * 323.64956 * 12 11 10 14 14 H 1.09001 * 113.90349 * 157.57001 * 13 12 11 15 15 C 1.53754 * 108.31119 * 284.48393 * 13 12 11 16 16 N 1.46587 * 108.10917 * 124.37812 * 15 13 12 17 17 C 1.36935 * 125.31116 * 181.24510 * 16 15 13 18 18 H 1.08002 * 119.99932 * 9.48344 * 17 16 15 19 19 C 1.38817 * 119.99893 * 189.75601 * 17 16 15 20 20 N 1.31611 * 119.99693 * 8.54342 * 19 17 16 21 21 Si 1.86801 * 119.99791 * 188.53911 * 19 17 16 22 22 H 1.48501 * 109.47041 * 94.40746 * 21 19 17 23 23 H 1.48503 * 109.46860 * 214.40783 * 21 19 17 24 24 H 1.48497 * 109.47241 * 334.40481 * 21 19 17 25 25 C 1.46714 * 109.37811 * 1.50798 * 16 15 13 26 26 C 1.46703 * 125.58991 * 179.97438 * 10 8 7 27 27 H 1.09006 * 111.52986 * 56.12649 * 26 10 8 28 28 C 1.38214 * 119.99945 * 180.27408 * 2 1 3 29 29 H 1.08999 * 109.46817 * 90.00543 * 1 2 3 30 30 H 1.09008 * 109.47187 * 210.00005 * 1 2 3 31 31 H 1.09000 * 109.47285 * 330.00093 * 1 2 3 32 32 H 1.08001 * 119.99719 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.00054 * 179.97438 * 4 3 2 34 34 H 1.08001 * 120.00014 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.47436 * 330.00375 * 7 6 5 36 36 H 1.09003 * 109.46947 * 210.00328 * 7 6 5 37 37 H 1.08996 * 110.36662 * 323.21236 * 11 10 8 38 38 H 1.08995 * 110.36639 * 85.43124 * 11 10 8 39 39 H 1.09001 * 111.50593 * 205.01606 * 12 11 10 40 40 H 1.09002 * 109.95985 * 81.58643 * 12 11 10 41 41 H 1.08996 * 109.74314 * 4.70160 * 15 13 12 42 42 H 1.09002 * 109.74053 * 244.04477 * 15 13 12 43 43 H 0.97006 * 119.99880 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.98913 * 101.17745 * 25 16 15 45 45 H 1.09000 * 109.98634 * 222.48733 * 25 16 15 46 46 H 1.07998 * 120.00382 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 3.5807 -1.1970 0.0005 7 6 4.3342 -2.5021 0.0000 8 6 4.5869 -2.9368 1.4206 9 8 4.1935 -2.2543 2.3427 10 7 5.2493 -4.0845 1.6664 11 6 5.7794 -5.0049 0.6442 12 6 5.8752 -6.3700 1.3452 13 6 6.2996 -5.9720 2.7837 14 1 6.0587 -6.7208 3.5384 15 6 7.7895 -5.5929 2.7604 16 7 7.9237 -4.2391 3.3063 17 6 9.0990 -3.5465 3.4248 18 1 9.9993 -3.9280 2.9662 19 6 9.1345 -2.3568 4.1393 20 7 8.0872 -1.9795 4.8414 21 14 10.6686 -1.2916 4.1041 22 1 10.5283 -0.2562 3.0488 23 1 10.8443 -0.6331 5.4235 24 1 11.8528 -2.1387 3.8121 25 6 6.6033 -3.7445 3.7116 26 6 5.5619 -4.6221 2.9951 27 1 4.6625 -4.7457 3.5984 28 6 2.1980 -1.1970 -0.0057 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6583 2.1326 0.0004 33 1 4.1204 2.1326 -0.0010 34 1 5.3517 0.0000 -0.0014 35 1 5.2860 -2.3719 -0.5149 36 1 3.7445 -3.2618 -0.5131 37 1 5.1018 -5.0562 -0.2080 38 1 6.7698 -4.6839 0.3217 39 1 6.6269 -7.0069 0.8788 40 1 4.8999 -6.8569 1.3467 41 1 8.1590 -5.6150 1.7352 42 1 8.3575 -6.2944 3.3715 43 1 8.1118 -1.1479 5.3404 44 1 6.4881 -3.8320 4.7919 45 1 6.4854 -2.7046 3.4070 46 1 1.6581 -2.1323 -0.0098 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076197784.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:27 Heat of formation + Delta-G solvation = -4.315287 kcal Electronic energy + Delta-G solvation = -26670.337048 eV Core-core repulsion = 23138.260343 eV Total energy + Delta-G solvation = -3532.076704 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64415 -40.40484 -39.06962 -36.49735 -34.48187 -33.91532 -32.91214 -32.43477 -30.75075 -28.91684 -27.85006 -27.53632 -26.54955 -23.95927 -23.09502 -22.68529 -21.69203 -20.84897 -19.80084 -18.91248 -18.10566 -17.43743 -17.16443 -16.90321 -16.54081 -16.07489 -15.67082 -15.66200 -15.32161 -14.72406 -14.54277 -14.39765 -14.26100 -13.99294 -13.86781 -13.78732 -13.44884 -13.23025 -12.99408 -12.94841 -12.87180 -12.75802 -12.72753 -12.44477 -12.09757 -12.00134 -11.89920 -11.86621 -11.82321 -11.60345 -11.44112 -10.87680 -10.69067 -9.69737 -9.55776 -9.48664 -8.86978 -7.89218 -5.26164 0.40065 0.48868 1.38971 1.41768 1.51089 1.70770 2.12634 2.45270 2.85720 3.28528 3.44101 3.63540 3.67221 3.79690 3.87817 3.97336 4.03283 4.04430 4.22156 4.25832 4.35207 4.44994 4.51738 4.53835 4.57754 4.61477 4.67135 4.77261 4.79170 4.86034 4.88487 4.96277 4.98568 5.12562 5.18335 5.19264 5.30147 5.32351 5.40160 5.44494 5.54438 5.62347 5.65891 5.68839 5.73936 6.13566 6.17973 6.68028 7.04870 7.28529 7.76794 8.40006 9.20810 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012554 B = 0.004378 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.883576 B = 6394.809393 C = 7957.143122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.127 4.127 5 C -0.138 4.138 6 C -0.073 4.073 7 C -0.085 4.085 8 C 0.518 3.482 9 O -0.585 6.585 10 N -0.603 5.603 11 C 0.094 3.906 12 C -0.106 4.106 13 C -0.097 4.097 14 H 0.118 0.882 15 C 0.135 3.865 16 N -0.618 5.618 17 C -0.242 4.242 18 H 0.086 0.914 19 C -0.068 4.068 20 N -0.950 5.950 21 Si 0.976 3.024 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.259 1.259 25 C 0.187 3.813 26 C 0.117 3.883 27 H 0.073 0.927 28 C -0.119 4.119 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.057 0.943 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.022 0.978 43 H 0.243 0.757 44 H -0.012 1.012 45 H 0.016 0.984 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.282 -5.378 -16.313 21.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.145 4.145 5 C -0.156 4.156 6 C -0.074 4.074 7 C -0.125 4.125 8 C 0.308 3.692 9 O -0.465 6.465 10 N -0.336 5.336 11 C -0.027 4.027 12 C -0.143 4.143 13 C -0.116 4.116 14 H 0.136 0.864 15 C 0.010 3.990 16 N -0.344 5.344 17 C -0.371 4.371 18 H 0.104 0.896 19 C -0.261 4.261 20 N -0.598 5.598 21 Si 0.804 3.196 22 H -0.218 1.218 23 H -0.224 1.224 24 H -0.183 1.183 25 C 0.061 3.939 26 C 0.012 3.988 27 H 0.091 0.909 28 C -0.137 4.137 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.156 0.844 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.117 0.883 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.052 0.948 44 H 0.006 0.994 45 H 0.034 0.966 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.437 -4.811 -15.775 21.273 hybrid contribution 1.301 1.237 1.044 2.076 sum -12.136 -3.574 -14.731 19.418 Atomic orbital electron populations 1.20812 0.88962 1.03397 1.03361 1.20280 0.97743 0.92788 0.98816 1.21320 0.93933 0.98626 1.01063 1.21332 0.95197 0.97971 0.99964 1.21164 0.99717 0.93324 1.01379 1.19496 0.94311 0.93917 0.99643 1.20670 1.03065 0.96426 0.92290 1.20891 0.76972 0.79130 0.92238 1.90717 1.53391 1.54020 1.48336 1.48441 1.54926 1.22385 1.07878 1.22427 0.99553 0.89104 0.91645 1.22630 1.04032 0.95704 0.91956 1.23074 0.93477 0.94658 1.00396 0.86403 1.21468 0.95004 0.85529 0.96999 1.44457 1.03088 1.13686 1.73190 1.19436 0.88194 1.02919 1.26560 0.89638 1.25744 1.00728 1.00840 0.98835 1.70249 1.31366 1.23550 1.34665 0.85099 0.79365 0.78794 0.76362 1.21812 1.22352 1.18263 1.20881 0.83899 0.95499 0.93640 1.22357 0.96508 0.94755 0.85181 0.90863 1.21098 0.92990 0.98755 1.00821 0.89502 0.91254 0.90744 0.83917 0.84880 0.87425 0.87199 0.84416 0.86730 0.92491 0.86973 0.88251 0.93967 0.95961 0.94802 0.99397 0.96552 0.84747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.79 10.01 71.24 0.71 -1.08 16 2 C -0.10 -2.32 5.88 -19.87 -0.12 -2.43 16 3 C -0.13 -3.23 9.70 22.27 0.22 -3.01 16 4 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 5 C -0.14 -4.38 9.70 22.27 0.22 -4.17 16 6 C -0.07 -2.19 4.37 -19.86 -0.09 -2.28 16 7 C -0.09 -2.28 4.83 29.10 0.14 -2.14 16 8 C 0.52 19.59 7.50 87.66 0.66 20.25 16 9 O -0.58 -28.85 15.78 -3.03 -0.05 -28.90 16 10 N -0.60 -20.91 3.04 -787.60 -2.40 -23.31 16 11 C 0.09 2.20 6.22 86.46 0.54 2.73 16 12 C -0.11 -2.05 6.22 31.60 0.20 -1.85 16 13 C -0.10 -2.93 4.25 -9.01 -0.04 -2.97 16 14 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 15 C 0.13 5.23 6.44 86.62 0.56 5.79 16 16 N -0.62 -32.72 3.38 -698.04 -2.36 -35.08 16 17 C -0.24 -14.04 10.21 84.04 0.86 -13.18 16 18 H 0.09 4.66 7.84 -2.91 -0.02 4.64 16 19 C -0.07 -4.12 5.42 84.86 0.46 -3.66 16 20 N -0.95 -62.40 10.56 21.65 0.23 -62.17 16 21 Si 0.98 48.16 29.56 68.60 2.03 50.19 16 22 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 23 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 24 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 25 C 0.19 10.20 4.95 86.64 0.43 10.63 16 26 C 0.12 4.67 3.62 46.03 0.17 4.83 16 27 H 0.07 2.93 8.14 -2.38 -0.02 2.92 16 28 C -0.12 -3.14 9.36 22.27 0.21 -2.93 16 29 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.10 8.09 -2.38 -0.02 1.08 16 31 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 33 H 0.13 3.17 8.06 -2.91 -0.02 3.15 16 34 H 0.11 3.53 8.06 -2.91 -0.02 3.51 16 35 H 0.11 2.69 8.09 -2.39 -0.02 2.67 16 36 H 0.14 2.45 7.78 -2.39 -0.02 2.43 16 37 H 0.11 1.69 7.46 -2.39 -0.02 1.67 16 38 H 0.06 1.51 7.55 -2.39 -0.02 1.49 16 39 H 0.11 1.65 7.96 -2.39 -0.02 1.63 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.04 1.51 6.84 -2.39 -0.02 1.49 16 42 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.24 15.69 8.31 -92.70 -0.77 14.92 16 44 H -0.01 -0.74 7.80 -2.39 -0.02 -0.76 16 45 H 0.02 1.05 6.34 -2.39 -0.02 1.03 16 46 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -85.53 367.46 3.75 -81.78 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.95 Total: 16.27 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.34 Total: 1.22 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -4.52 Total: -120.56 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.05 Total: -28.90 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Total: -85.53 3.75 -81.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076197784.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.463 kcal (2) G-P(sol) polarization free energy of solvation -85.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds