Wall clock time and date at job start Fri Apr 10 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38382 * 119.92351 * 2 1 4 4 C 1.38349 * 120.28880 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14113 * 359.78600 * 4 3 2 6 6 C 1.50704 * 120.07058 * 180.23053 * 5 4 3 7 7 C 1.39557 * 119.85545 * 0.44542 * 5 4 3 8 8 C 1.47850 * 120.14166 * 179.81264 * 7 5 4 9 9 O 1.21544 * 120.00137 * 322.53106 * 8 7 5 10 10 N 1.34783 * 119.99668 * 142.53770 * 8 7 5 11 11 C 1.48794 * 126.34247 * 355.01425 * 10 8 7 12 12 C 1.54850 * 104.88132 * 204.90654 * 11 10 8 13 13 C 1.55125 * 101.77532 * 322.52827 * 12 11 10 14 14 H 1.08999 * 113.46361 * 158.34547 * 13 12 11 15 15 C 1.54210 * 108.10935 * 286.23221 * 13 12 11 16 16 N 1.46699 * 106.74486 * 136.03601 * 15 13 12 17 17 C 1.36938 * 125.32134 * 161.74418 * 16 15 13 18 18 H 1.07998 * 120.00350 * 359.72247 * 17 16 15 19 19 C 1.38813 * 119.99988 * 179.44699 * 17 16 15 20 20 N 1.31628 * 119.99927 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47138 * 90.00030 * 21 19 17 23 23 H 1.48498 * 109.47203 * 210.00209 * 21 19 17 24 24 H 1.48505 * 109.47139 * 329.99862 * 21 19 17 25 25 C 1.46632 * 109.35828 * 341.48502 * 16 15 13 26 26 C 1.46725 * 125.58597 * 174.91926 * 10 8 7 27 27 H 1.09001 * 111.33658 * 55.45251 * 26 10 8 28 28 C 1.37928 * 119.92514 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46917 * 270.02700 * 1 2 3 30 30 H 1.09002 * 109.46873 * 30.02351 * 1 2 3 31 31 H 1.08992 * 109.46800 * 150.02292 * 1 2 3 32 32 H 1.07998 * 119.86151 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.92462 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47020 * 264.69112 * 6 5 4 35 35 H 1.08997 * 109.47469 * 24.69756 * 6 5 4 36 36 H 1.08997 * 109.47063 * 144.69737 * 6 5 4 37 37 H 1.08998 * 110.57440 * 85.92683 * 11 10 8 38 38 H 1.09000 * 110.09304 * 323.64539 * 11 10 8 39 39 H 1.08998 * 110.96739 * 204.40881 * 12 11 10 40 40 H 1.09000 * 110.96461 * 80.64444 * 12 11 10 41 41 H 1.09006 * 110.12331 * 16.67141 * 15 13 12 42 42 H 1.09001 * 109.94060 * 255.30622 * 15 13 12 43 43 H 0.96997 * 120.00002 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.75679 * 121.14343 * 25 16 15 45 45 H 1.08994 * 109.76091 * 241.84541 * 25 16 15 46 46 H 1.07996 * 120.07757 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5808 1.2082 0.0005 5 6 4.2812 0.0194 0.0055 6 6 5.7882 0.0309 0.0113 7 6 3.5911 -1.1936 0.0006 8 6 4.3353 -2.4711 0.0018 9 8 5.3658 -2.5748 -0.6343 10 7 3.8708 -3.5209 0.7081 11 6 2.6899 -3.5215 1.6133 12 6 2.9568 -4.6724 2.6144 13 6 3.6243 -5.7359 1.7035 14 1 4.2228 -6.4631 2.2521 15 6 2.5307 -6.3574 0.8114 16 7 3.0873 -6.4411 -0.5433 17 6 2.6047 -7.2342 -1.5499 18 1 1.7487 -7.8688 -1.3742 19 6 3.2124 -7.2184 -2.7979 20 7 4.2527 -6.4413 -3.0135 21 14 2.5537 -8.2998 -4.1713 22 1 1.5242 -7.5535 -4.9383 23 1 3.6663 -8.6815 -5.0776 24 1 1.9469 -9.5240 -3.5896 25 6 4.2374 -5.5382 -0.6529 26 6 4.4486 -4.8696 0.7129 27 1 5.5038 -4.8481 0.9856 28 6 2.1951 -1.1954 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3632 -0.8901 -0.5134 32 1 1.6538 2.1326 -0.0004 33 1 4.1136 2.1475 0.0009 34 1 6.1562 -0.0634 -1.0103 35 1 6.1428 0.9681 0.4403 36 1 6.1556 -0.8039 0.6082 37 1 1.7761 -3.7122 1.0506 38 1 2.6209 -2.5693 2.1393 39 1 2.0238 -5.0485 3.0340 40 1 3.6370 -4.3527 3.4038 41 1 1.6428 -5.7249 0.8109 42 1 2.2782 -7.3542 1.1728 43 1 4.6771 -6.4300 -3.8857 44 1 5.1268 -6.1058 -0.9266 45 1 4.0385 -4.7781 -1.4083 46 1 1.6552 -2.1307 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076497694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:30 Heat of formation + Delta-G solvation = 22.426445 kcal Electronic energy + Delta-G solvation = -27209.923047 eV Core-core repulsion = 23679.005951 eV Total energy + Delta-G solvation = -3530.917096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.48756 -39.16999 -37.45937 -34.77161 -33.71533 -32.34954 -31.02235 -30.84655 -29.25856 -28.55301 -26.43383 -25.00525 -24.69158 -23.87563 -22.17804 -21.51332 -20.33738 -19.46335 -18.49848 -17.10287 -16.60592 -15.93606 -15.82959 -15.61327 -14.76625 -14.50589 -14.25717 -13.96590 -13.80591 -13.70714 -13.24458 -13.12232 -12.98967 -12.77456 -12.69638 -12.38475 -12.09287 -11.92356 -11.84865 -11.56904 -11.47006 -11.44043 -11.11575 -11.01918 -10.93151 -10.70315 -10.45214 -10.21408 -10.11850 -9.83542 -9.67193 -9.36806 -8.88935 -8.56031 -8.47594 -8.10845 -6.78279 -5.64541 -3.00772 1.04119 1.34645 3.11454 3.35105 3.42742 3.46950 3.50024 3.82871 4.51492 4.58841 4.76589 4.76998 4.80335 4.97074 5.04700 5.14902 5.15996 5.35062 5.49344 5.51397 5.52347 5.53525 5.63865 5.65119 5.71542 5.77282 5.79106 5.84554 5.88191 5.95183 5.99112 6.03176 6.22769 6.26656 6.31624 6.35705 6.49777 6.51291 6.56252 6.61567 6.65799 6.88550 6.93857 7.58881 7.68872 7.91583 8.00128 8.32576 8.61471 9.26753 9.87900 10.51376 11.45289 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.004369 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.444596 B = 6407.445650 C = 6658.876276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.101 4.101 4 C -0.128 4.128 5 C -0.040 4.040 6 C -0.111 4.111 7 C -0.117 4.117 8 C 0.573 3.427 9 O -0.524 6.524 10 N -0.600 5.600 11 C 0.102 3.898 12 C -0.125 4.125 13 C -0.109 4.109 14 H 0.098 0.902 15 C 0.143 3.857 16 N -0.602 5.602 17 C -0.234 4.234 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.915 5.915 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.176 3.824 26 C 0.113 3.887 27 H 0.078 0.922 28 C -0.083 4.083 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.122 0.878 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.018 0.982 42 H 0.035 0.965 43 H 0.253 0.747 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.587 14.147 12.558 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.102 4.102 3 C -0.119 4.119 4 C -0.146 4.146 5 C -0.041 4.041 6 C -0.168 4.168 7 C -0.120 4.120 8 C 0.362 3.638 9 O -0.400 6.400 10 N -0.334 5.334 11 C -0.021 4.021 12 C -0.163 4.163 13 C -0.129 4.129 14 H 0.117 0.883 15 C 0.017 3.983 16 N -0.329 5.329 17 C -0.362 4.362 18 H 0.096 0.904 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.051 3.949 26 C 0.009 3.991 27 H 0.096 0.904 28 C -0.101 4.101 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.035 0.965 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.929 14.099 11.930 18.882 hybrid contribution -0.446 -0.545 -0.892 1.137 sum -4.375 13.554 11.038 18.019 Atomic orbital electron populations 1.20774 0.90912 1.02964 1.02267 1.19818 0.96235 0.92814 1.01342 1.21132 0.94119 0.97442 0.99195 1.20941 0.94049 0.97276 1.02317 1.19946 0.96559 0.91545 0.96010 1.20821 0.90399 1.01970 1.03585 1.19865 0.93703 0.93223 1.05184 1.17777 0.84527 0.82369 0.79171 1.90799 1.23748 1.83155 1.42333 1.48607 1.29754 1.10072 1.44944 1.22664 0.89342 0.98885 0.91191 1.22768 1.01293 0.95324 0.96952 1.23181 0.97673 0.96549 0.95467 0.88345 1.21316 0.93511 0.97362 0.86130 1.44220 1.33060 1.48618 1.07008 1.19003 1.10857 1.17033 0.89353 0.90448 1.24840 0.98030 0.99700 0.97686 1.69997 1.22900 1.40958 1.22361 0.86146 0.77728 0.79862 0.82165 1.21670 1.21652 1.20677 1.21245 0.91113 0.92586 0.89946 1.22618 0.96565 0.80677 0.99209 0.90369 1.21381 0.92880 0.98408 0.97444 0.91203 0.91608 0.91296 0.85962 0.85658 0.90155 0.92207 0.90971 0.90993 0.91090 0.89878 0.91055 0.96464 0.94722 0.93645 0.93018 0.92946 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.01 0.36 -0.67 16 2 C -0.10 -1.22 5.87 -104.68 -0.61 -1.83 16 3 C -0.10 -1.10 9.69 -39.49 -0.38 -1.48 16 4 C -0.13 -1.50 9.67 -39.64 -0.38 -1.88 16 5 C -0.04 -0.57 5.91 -104.22 -0.62 -1.19 16 6 C -0.11 -1.52 8.68 36.01 0.31 -1.20 16 7 C -0.12 -1.91 5.42 -104.96 -0.57 -2.48 16 8 C 0.57 11.23 6.40 -12.32 -0.08 11.15 16 9 O -0.52 -12.05 15.11 5.33 0.08 -11.97 16 10 N -0.60 -10.95 3.02 -162.37 -0.49 -11.44 16 11 C 0.10 1.44 4.80 -1.80 -0.01 1.43 16 12 C -0.13 -1.57 6.35 -24.63 -0.16 -1.73 16 13 C -0.11 -1.80 4.35 -87.65 -0.38 -2.18 16 14 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 15 C 0.14 2.86 6.44 -3.30 -0.02 2.84 16 16 N -0.60 -15.57 3.38 -171.91 -0.58 -16.15 16 17 C -0.23 -6.63 10.25 -15.06 -0.15 -6.78 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 20 N -0.92 -28.21 10.24 55.49 0.57 -27.64 16 21 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 C 0.18 4.54 4.97 -3.70 -0.02 4.52 16 26 C 0.11 2.25 3.54 -66.33 -0.23 2.02 16 27 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 28 C -0.08 -1.19 7.86 -39.19 -0.31 -1.50 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 33 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.63 8.05 -51.93 -0.42 0.21 16 36 H 0.07 1.10 6.78 -51.93 -0.35 0.74 16 37 H 0.07 1.05 6.07 -51.93 -0.32 0.74 16 38 H 0.07 0.86 7.31 -51.93 -0.38 0.48 16 39 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.02 0.34 6.51 -51.93 -0.34 0.01 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.05 1.50 7.34 -51.93 -0.38 1.12 16 45 H 0.05 1.57 6.80 -51.93 -0.35 1.21 16 46 H 0.13 1.91 5.90 -52.49 -0.31 1.60 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -34.17 358.42 -10.43 -44.60 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -7.03 Total: 0.82 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.35 Total: -1.23 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.50 Total: -55.23 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.08 Total: -11.97 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.17 -10.43 -44.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076497694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.022 kcal (2) G-P(sol) polarization free energy of solvation -34.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds