Wall clock time and date at job start Fri Apr 10 2020 23:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38382 * 119.92351 * 2 1 4 4 C 1.38349 * 120.28880 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14113 * 359.78600 * 4 3 2 6 6 C 1.50704 * 120.07058 * 180.23053 * 5 4 3 7 7 C 1.39557 * 119.85545 * 0.44542 * 5 4 3 8 8 C 1.47850 * 120.14166 * 179.81264 * 7 5 4 9 9 O 1.21544 * 120.00137 * 322.53106 * 8 7 5 10 10 N 1.34783 * 119.99668 * 142.53770 * 8 7 5 11 11 C 1.48794 * 126.34247 * 355.01425 * 10 8 7 12 12 C 1.54850 * 104.88132 * 204.90654 * 11 10 8 13 13 C 1.55125 * 101.77532 * 322.52827 * 12 11 10 14 14 H 1.08999 * 113.46361 * 158.34547 * 13 12 11 15 15 C 1.54210 * 108.10935 * 286.23221 * 13 12 11 16 16 N 1.46699 * 106.74486 * 136.03601 * 15 13 12 17 17 C 1.36938 * 125.32134 * 161.74418 * 16 15 13 18 18 H 1.07998 * 120.00350 * 359.72247 * 17 16 15 19 19 C 1.38813 * 119.99988 * 179.44699 * 17 16 15 20 20 N 1.31628 * 119.99927 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00152 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47138 * 90.00030 * 21 19 17 23 23 H 1.48498 * 109.47203 * 210.00209 * 21 19 17 24 24 H 1.48505 * 109.47139 * 329.99862 * 21 19 17 25 25 C 1.46632 * 109.35828 * 341.48502 * 16 15 13 26 26 C 1.46725 * 125.58597 * 174.91926 * 10 8 7 27 27 H 1.09001 * 111.33658 * 55.45251 * 26 10 8 28 28 C 1.37928 * 119.92514 * 179.97438 * 2 1 3 29 29 H 1.08997 * 109.46917 * 270.02700 * 1 2 3 30 30 H 1.09002 * 109.46873 * 30.02351 * 1 2 3 31 31 H 1.08992 * 109.46800 * 150.02292 * 1 2 3 32 32 H 1.07998 * 119.86151 * 359.97438 * 3 2 1 33 33 H 1.07994 * 119.92462 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.47020 * 264.69112 * 6 5 4 35 35 H 1.08997 * 109.47469 * 24.69756 * 6 5 4 36 36 H 1.08997 * 109.47063 * 144.69737 * 6 5 4 37 37 H 1.08998 * 110.57440 * 85.92683 * 11 10 8 38 38 H 1.09000 * 110.09304 * 323.64539 * 11 10 8 39 39 H 1.08998 * 110.96739 * 204.40881 * 12 11 10 40 40 H 1.09000 * 110.96461 * 80.64444 * 12 11 10 41 41 H 1.09006 * 110.12331 * 16.67141 * 15 13 12 42 42 H 1.09001 * 109.94060 * 255.30622 * 15 13 12 43 43 H 0.96997 * 120.00002 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.75679 * 121.14343 * 25 16 15 45 45 H 1.08994 * 109.76091 * 241.84541 * 25 16 15 46 46 H 1.07996 * 120.07757 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1993 0.0000 4 6 3.5808 1.2082 0.0005 5 6 4.2812 0.0194 0.0055 6 6 5.7882 0.0309 0.0113 7 6 3.5911 -1.1936 0.0006 8 6 4.3353 -2.4711 0.0018 9 8 5.3658 -2.5748 -0.6343 10 7 3.8708 -3.5209 0.7081 11 6 2.6899 -3.5215 1.6133 12 6 2.9568 -4.6724 2.6144 13 6 3.6243 -5.7359 1.7035 14 1 4.2228 -6.4631 2.2521 15 6 2.5307 -6.3574 0.8114 16 7 3.0873 -6.4411 -0.5433 17 6 2.6047 -7.2342 -1.5499 18 1 1.7487 -7.8688 -1.3742 19 6 3.2124 -7.2184 -2.7979 20 7 4.2527 -6.4413 -3.0135 21 14 2.5537 -8.2998 -4.1713 22 1 1.5242 -7.5535 -4.9383 23 1 3.6663 -8.6815 -5.0776 24 1 1.9469 -9.5240 -3.5896 25 6 4.2374 -5.5382 -0.6529 26 6 4.4486 -4.8696 0.7129 27 1 5.5038 -4.8481 0.9856 28 6 2.1951 -1.1954 0.0005 29 1 -0.3633 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3632 -0.8901 -0.5134 32 1 1.6538 2.1326 -0.0004 33 1 4.1136 2.1475 0.0009 34 1 6.1562 -0.0634 -1.0103 35 1 6.1428 0.9681 0.4403 36 1 6.1556 -0.8039 0.6082 37 1 1.7761 -3.7122 1.0506 38 1 2.6209 -2.5693 2.1393 39 1 2.0238 -5.0485 3.0340 40 1 3.6370 -4.3527 3.4038 41 1 1.6428 -5.7249 0.8109 42 1 2.2782 -7.3542 1.1728 43 1 4.6771 -6.4300 -3.8857 44 1 5.1268 -6.1058 -0.9266 45 1 4.0385 -4.7781 -1.4083 46 1 1.6552 -2.1307 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076497694.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:30 Heat of formation + Delta-G solvation = 1.305125 kcal Electronic energy + Delta-G solvation = -27210.838936 eV Core-core repulsion = 23679.005951 eV Total energy + Delta-G solvation = -3531.832985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.85501 -40.40554 -38.91506 -36.55967 -34.70582 -34.06867 -32.61601 -32.15311 -30.42730 -30.02718 -28.03643 -26.63615 -26.02775 -25.04347 -23.38386 -22.94683 -21.90442 -20.83393 -19.91692 -18.93048 -18.21393 -17.29040 -17.04831 -16.75459 -16.56157 -15.91002 -15.61489 -15.58961 -15.01904 -14.83138 -14.71331 -14.43555 -14.19820 -14.04725 -13.91158 -13.77199 -13.47490 -13.37360 -13.02071 -12.91715 -12.83376 -12.75506 -12.54559 -12.46903 -12.39819 -12.15003 -12.01301 -11.88553 -11.83052 -11.61708 -11.43184 -10.88313 -10.73574 -9.94390 -9.67079 -9.41677 -8.93240 -7.86453 -5.25429 -0.04057 0.36168 1.40367 1.43644 1.52782 1.77502 1.97676 2.46109 2.74361 3.29705 3.31692 3.54021 3.66735 3.77865 3.83163 3.89279 3.98172 4.04904 4.20679 4.26765 4.37146 4.40887 4.49316 4.54680 4.63188 4.68555 4.70290 4.73751 4.81713 4.83463 4.88708 4.90172 5.00254 5.07745 5.12857 5.14257 5.25141 5.32548 5.34270 5.38246 5.41916 5.51927 5.58146 5.63859 5.74695 5.99027 6.15547 6.54548 7.04481 7.13848 7.76038 8.38244 9.22242 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013686 B = 0.004369 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.444596 B = 6407.445650 C = 6658.876276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.090 4.090 4 C -0.121 4.121 5 C -0.058 4.058 6 C -0.106 4.106 7 C -0.144 4.144 8 C 0.562 3.438 9 O -0.578 6.578 10 N -0.602 5.602 11 C 0.098 3.902 12 C -0.106 4.106 13 C -0.095 4.095 14 H 0.120 0.880 15 C 0.136 3.864 16 N -0.623 5.623 17 C -0.241 4.241 18 H 0.091 0.909 19 C -0.073 4.073 20 N -0.956 5.956 21 Si 0.981 3.019 22 H -0.287 1.287 23 H -0.298 1.298 24 H -0.259 1.259 25 C 0.197 3.803 26 C 0.115 3.885 27 H 0.071 0.929 28 C -0.095 4.095 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.059 0.941 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.097 0.903 39 H 0.118 0.882 40 H 0.097 0.903 41 H 0.032 0.968 42 H 0.048 0.952 43 H 0.242 0.758 44 H 0.000 1.000 45 H -0.003 1.003 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.677 15.956 15.291 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.108 4.108 4 C -0.138 4.138 5 C -0.059 4.059 6 C -0.162 4.162 7 C -0.147 4.147 8 C 0.352 3.648 9 O -0.459 6.459 10 N -0.334 5.334 11 C -0.023 4.023 12 C -0.144 4.144 13 C -0.115 4.115 14 H 0.138 0.862 15 C 0.012 3.988 16 N -0.350 5.350 17 C -0.370 4.370 18 H 0.109 0.891 19 C -0.265 4.265 20 N -0.605 5.605 21 Si 0.809 3.191 22 H -0.214 1.214 23 H -0.225 1.225 24 H -0.184 1.184 25 C 0.071 3.929 26 C 0.011 3.989 27 H 0.089 0.911 28 C -0.114 4.114 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.078 0.922 32 H 0.180 0.820 33 H 0.176 0.824 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.050 0.950 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.018 0.982 45 H 0.015 0.985 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.088 15.894 14.738 22.805 hybrid contribution 0.459 -1.053 -1.739 2.084 sum -6.629 14.842 12.998 20.813 Atomic orbital electron populations 1.20838 0.88663 1.03538 1.03687 1.20179 0.97835 0.92160 0.99820 1.21608 0.93911 0.98535 0.96696 1.21312 0.94709 0.97235 1.00563 1.20150 0.96754 0.92040 0.96956 1.20746 0.90632 1.02700 1.02127 1.19760 0.94517 0.92069 1.08387 1.18544 0.84181 0.83822 0.78219 1.90748 1.26317 1.84322 1.44510 1.48705 1.30722 1.08816 1.45196 1.22937 0.87290 1.01205 0.90886 1.22819 1.03019 0.92484 0.96054 1.23186 0.96222 0.97074 0.94970 0.86200 1.21612 0.94817 0.98675 0.83730 1.44531 1.33186 1.48103 1.09138 1.19524 1.10662 1.16711 0.90103 0.89089 1.25792 0.98589 1.01559 1.00565 1.70309 1.24802 1.43248 1.22118 0.85040 0.76700 0.78665 0.78726 1.21418 1.22506 1.18363 1.20744 0.89298 0.90779 0.92086 1.22362 0.97459 0.82246 0.96883 0.91060 1.21368 0.91982 0.99363 0.98637 0.89245 0.89607 0.92186 0.82020 0.82413 0.92207 0.88667 0.93520 0.91554 0.88522 0.86415 0.88473 0.95017 0.93374 0.94857 0.98189 0.98514 0.86096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.64 10.01 71.24 0.71 -0.93 16 2 C -0.10 -2.12 5.87 -19.90 -0.12 -2.23 16 3 C -0.09 -1.60 9.69 22.33 0.22 -1.38 16 4 C -0.12 -2.47 9.67 22.23 0.21 -2.25 16 5 C -0.06 -1.66 5.91 -19.61 -0.12 -1.78 16 6 C -0.11 -2.99 8.68 71.24 0.62 -2.37 16 7 C -0.14 -4.86 5.42 -20.09 -0.11 -4.97 16 8 C 0.56 23.63 6.40 86.79 0.56 24.18 16 9 O -0.58 -29.45 15.11 -3.85 -0.06 -29.51 16 10 N -0.60 -22.82 3.02 -785.90 -2.38 -25.20 16 11 C 0.10 2.61 4.80 86.57 0.42 3.02 16 12 C -0.11 -2.26 6.35 31.95 0.20 -2.06 16 13 C -0.10 -2.99 4.35 -8.87 -0.04 -3.03 16 14 H 0.12 3.31 8.14 -2.39 -0.02 3.29 16 15 C 0.14 5.29 6.44 86.75 0.56 5.85 16 16 N -0.62 -33.31 3.38 -697.79 -2.36 -35.66 16 17 C -0.24 -13.99 10.25 84.03 0.86 -13.13 16 18 H 0.09 4.90 7.83 -2.91 -0.02 4.88 16 19 C -0.07 -4.39 5.48 84.86 0.47 -3.92 16 20 N -0.96 -63.27 10.24 21.65 0.22 -63.04 16 21 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 22 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 C 0.20 10.97 4.97 86.53 0.43 11.40 16 26 C 0.12 4.81 3.54 45.91 0.16 4.98 16 27 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 28 C -0.09 -2.70 7.86 22.53 0.18 -2.52 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.09 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 32 H 0.16 1.65 8.06 -2.91 -0.02 1.63 16 33 H 0.16 2.17 8.06 -2.91 -0.02 2.15 16 34 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.09 1.90 8.05 -2.39 -0.02 1.88 16 36 H 0.05 1.53 6.78 -2.39 -0.02 1.51 16 37 H 0.07 1.86 6.07 -2.39 -0.01 1.84 16 38 H 0.10 2.12 7.31 -2.39 -0.02 2.10 16 39 H 0.12 1.83 8.08 -2.39 -0.02 1.81 16 40 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.03 1.17 6.51 -2.38 -0.02 1.16 16 42 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.24 15.77 8.31 -92.71 -0.77 14.99 16 44 H 0.00 0.00 7.34 -2.39 -0.02 -0.02 16 45 H 0.00 -0.22 6.80 -2.39 -0.02 -0.24 16 46 H 0.12 3.57 5.90 -2.91 -0.02 3.55 16 Total: -1.00 -84.61 358.42 3.64 -80.97 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.97 Total: 13.46 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: 5.21 Total: 8.86 kcal Atomic # 7 Polarization: -119.39 SS G_CDS: -4.51 Total: -123.90 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.06 Total: -29.51 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -84.61 3.64 -80.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076497694.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.271 kcal (2) G-P(sol) polarization free energy of solvation -84.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds