Wall clock time and date at job start Fri Apr 10 2020 23:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46840 * 2 1 4 4 C 1.38357 * 119.85116 * 90.00122 * 3 2 1 5 5 C 1.37961 * 120.14590 * 180.02562 * 4 3 2 6 6 C 1.39578 * 119.85077 * 359.97438 * 5 4 3 7 7 C 1.47838 * 120.14433 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00077 * 4.93023 * 7 6 5 9 9 N 1.34779 * 120.00393 * 184.92939 * 7 6 5 10 10 C 1.47397 * 125.59260 * 174.28272 * 9 7 6 11 11 C 1.54858 * 104.81008 * 204.60521 * 10 9 7 12 12 C 1.55122 * 101.77589 * 322.81291 * 11 10 9 13 13 H 1.09002 * 114.15561 * 158.73301 * 12 11 10 14 14 C 1.54233 * 108.08656 * 286.25155 * 12 11 10 15 15 N 1.46699 * 106.72801 * 136.07405 * 14 12 11 16 16 C 1.36940 * 125.32096 * 161.68765 * 15 14 12 17 17 H 1.08000 * 120.00147 * 359.73014 * 16 15 14 18 18 C 1.38817 * 120.00188 * 179.72022 * 16 15 14 19 19 N 1.31621 * 119.99637 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47614 * 270.00448 * 20 18 16 22 22 H 1.48501 * 109.47186 * 30.00657 * 20 18 16 23 23 H 1.48503 * 109.46986 * 150.00488 * 20 18 16 24 24 C 1.46627 * 109.35963 * 341.43013 * 15 14 12 25 25 C 1.46739 * 125.58280 * 354.28352 * 9 7 6 26 26 H 1.09001 * 111.84061 * 55.81610 * 25 9 7 27 27 C 1.39572 * 119.70957 * 0.24489 * 6 5 4 28 28 C 1.37961 * 119.85712 * 359.52270 * 27 6 5 29 29 H 1.09001 * 109.47426 * 59.99831 * 1 2 3 30 30 H 1.09001 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47263 * 299.99704 * 1 2 3 32 32 H 1.08999 * 109.46866 * 240.00397 * 2 1 3 33 33 H 1.08995 * 109.47452 * 119.99760 * 2 1 3 34 34 H 1.08001 * 119.92891 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.07462 * 179.97438 * 5 4 3 36 36 H 1.09004 * 110.37074 * 85.77833 * 10 9 7 37 37 H 1.08999 * 110.46750 * 323.49041 * 10 9 7 38 38 H 1.08998 * 110.96424 * 204.69011 * 11 10 9 39 39 H 1.08993 * 110.99461 * 80.95052 * 11 10 9 40 40 H 1.09001 * 110.14496 * 16.70596 * 14 12 11 41 41 H 1.08999 * 109.92929 * 255.33160 * 14 12 11 42 42 H 0.96999 * 119.99907 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.75925 * 121.18080 * 24 15 14 44 44 H 1.08996 * 109.75995 * 241.88611 * 24 15 14 45 45 H 1.08000 * 120.07227 * 179.73194 * 27 6 5 46 46 H 1.08002 * 119.92978 * 180.23164 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0702 1.2000 5 6 2.7212 3.3710 1.2071 6 6 2.9548 4.0319 0.0001 7 6 3.4464 5.4262 0.0001 8 8 3.7334 5.9694 1.0490 9 7 3.5764 6.0950 -1.1628 10 6 3.9386 7.5173 -1.2985 11 6 3.3548 7.9455 -2.6674 12 6 3.5930 6.6748 -3.5246 13 1 2.9518 6.6027 -4.4031 14 6 5.0986 6.5914 -3.8490 15 7 5.4977 5.1945 -3.6452 16 6 6.6313 4.6137 -4.1477 17 1 7.3130 5.1938 -4.7520 18 6 6.9045 3.2792 -3.8804 19 7 6.0736 2.5721 -3.1442 20 14 8.4513 2.4870 -4.5653 21 1 8.1595 1.9026 -5.8989 22 1 9.5165 3.5134 -4.6970 23 1 8.9079 1.4152 -3.6444 24 6 4.4960 4.5192 -2.8142 25 6 3.3806 5.5264 -2.5013 26 1 2.3949 5.0739 -2.6094 27 6 2.7168 3.3727 -1.2069 28 6 2.2621 2.0702 -1.2000 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0811 1.5575 2.1332 35 1 2.8996 3.8769 2.1445 36 1 5.0222 7.6350 -1.2947 37 1 3.4912 8.1029 -0.4953 38 1 3.8988 8.7980 -3.0740 39 1 2.2907 8.1673 -2.5860 40 1 5.6632 7.2415 -3.1805 41 1 5.2720 6.8812 -4.8853 42 1 6.2642 1.6395 -2.9577 43 1 4.0824 3.6677 -3.3545 44 1 4.9559 4.1787 -1.8865 45 1 2.8914 3.8799 -2.1442 46 1 2.0811 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076522096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:37 Heat of formation + Delta-G solvation = 50.523428 kcal Electronic energy + Delta-G solvation = -27366.925037 eV Core-core repulsion = 23837.226318 eV Total energy + Delta-G solvation = -3529.698719 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.73708 -38.82407 -37.67181 -34.69990 -34.11445 -32.39434 -31.57587 -30.36563 -29.29434 -28.71931 -26.64195 -24.83523 -24.37788 -22.68736 -22.29279 -20.94333 -20.74677 -19.81273 -19.02761 -17.27947 -16.82755 -15.84699 -15.75587 -15.01939 -14.82191 -14.78824 -14.26611 -13.97582 -13.69995 -13.50487 -13.39771 -13.15893 -12.96135 -12.82312 -12.75252 -12.26495 -12.16738 -11.89043 -11.72776 -11.42535 -11.17139 -11.13198 -11.03791 -10.90911 -10.78638 -10.64564 -10.51217 -10.24596 -10.05519 -9.85624 -9.73062 -9.41504 -8.67905 -8.56391 -8.44262 -8.14249 -6.89037 -5.76020 -3.10109 1.22757 1.77328 3.23350 3.37227 3.37969 3.43384 3.45163 4.23241 4.44983 4.66988 4.71896 4.86195 4.99263 5.12600 5.16284 5.28170 5.31909 5.36557 5.39313 5.44982 5.55855 5.61373 5.65164 5.73496 5.75187 5.80718 5.88277 5.89017 5.99871 6.06605 6.09424 6.15890 6.24385 6.25005 6.31700 6.35067 6.54720 6.59219 6.70085 6.75836 6.82972 6.87402 7.26092 7.26305 7.47163 7.70921 7.95305 8.19773 8.56875 9.16503 9.77326 10.39855 11.35053 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.005957 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.108415 B = 4699.291490 C = 6602.074700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.062 4.062 4 C -0.138 4.138 5 C -0.062 4.062 6 C -0.136 4.136 7 C 0.579 3.421 8 O -0.554 6.554 9 N -0.597 5.597 10 C 0.110 3.890 11 C -0.124 4.124 12 C -0.110 4.110 13 H 0.101 0.899 14 C 0.140 3.860 15 N -0.601 5.601 16 C -0.232 4.232 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.918 5.918 20 Si 0.912 3.088 21 H -0.288 1.288 22 H -0.282 1.282 23 H -0.291 1.291 24 C 0.167 3.833 25 C 0.087 3.913 26 H 0.093 0.907 27 C -0.101 4.101 28 C -0.119 4.119 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.121 0.879 35 H 0.128 0.872 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.022 0.978 41 H 0.037 0.963 42 H 0.253 0.747 43 H 0.060 0.940 44 H 0.057 0.943 45 H 0.175 0.825 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.252 1.426 2.899 12.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.125 4.125 3 C -0.063 4.063 4 C -0.156 4.156 5 C -0.081 4.081 6 C -0.139 4.139 7 C 0.370 3.630 8 O -0.434 6.434 9 N -0.329 5.329 10 C -0.012 4.012 11 C -0.162 4.162 12 C -0.130 4.130 13 H 0.119 0.881 14 C 0.014 3.986 15 N -0.327 5.327 16 C -0.360 4.360 17 H 0.097 0.903 18 C -0.201 4.201 19 N -0.565 5.565 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.207 1.207 23 H -0.217 1.217 24 C 0.042 3.958 25 C -0.017 4.017 26 H 0.110 0.890 27 C -0.118 4.118 28 C -0.137 4.137 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.064 0.936 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.192 0.808 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.983 1.471 3.536 12.580 hybrid contribution 1.029 -0.599 -0.319 1.233 sum -10.954 0.871 3.216 11.450 Atomic orbital electron populations 1.21736 0.94847 1.01444 1.02195 1.20582 0.95976 0.92940 1.02990 1.20073 0.97022 0.95765 0.93405 1.20841 1.02525 0.94776 0.97420 1.21133 0.95558 0.94052 0.97368 1.19786 1.05347 0.94141 0.94583 1.17941 0.77255 0.85696 0.82095 1.90702 1.51985 1.69783 1.30979 1.48183 1.68061 1.11189 1.05458 1.22186 1.00367 0.81457 0.97236 1.22770 1.01055 0.97801 0.94618 1.23217 0.99249 0.93408 0.97137 0.88089 1.21393 0.90565 0.88418 0.98221 1.44179 1.23881 1.05236 1.59429 1.19026 0.97403 0.93449 1.26134 0.90331 1.24789 0.98777 0.96569 0.99992 1.69904 1.36595 1.08261 1.41746 0.86121 0.82532 0.79025 0.78082 1.21569 1.20737 1.21692 1.21686 0.86811 0.90936 0.96398 1.23119 1.00400 0.96521 0.81642 0.88963 1.23183 0.93155 0.95352 1.00107 1.20981 1.00476 0.94817 0.97419 0.92470 0.92594 0.92669 0.90757 0.91144 0.86128 0.85388 0.91169 0.90888 0.89802 0.91007 0.96090 0.94449 0.93631 0.92218 0.92528 0.80835 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.89 37.16 0.37 -1.01 16 2 C -0.09 -0.99 6.06 -27.88 -0.17 -1.16 16 3 C -0.06 -0.90 5.14 -104.53 -0.54 -1.43 16 4 C -0.14 -2.00 9.68 -39.64 -0.38 -2.39 16 5 C -0.06 -1.05 9.60 -39.18 -0.38 -1.43 16 6 C -0.14 -2.55 5.69 -104.97 -0.60 -3.14 16 7 C 0.58 11.78 7.38 -12.33 -0.09 11.69 16 8 O -0.55 -12.45 16.65 5.32 0.09 -12.36 16 9 N -0.60 -11.06 2.98 -168.69 -0.50 -11.56 16 10 C 0.11 1.76 6.41 -2.57 -0.02 1.75 16 11 C -0.12 -1.60 6.35 -24.63 -0.16 -1.75 16 12 C -0.11 -1.72 4.35 -87.64 -0.38 -2.10 16 13 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.14 2.72 6.44 -3.29 -0.02 2.70 16 15 N -0.60 -14.69 3.38 -171.90 -0.58 -15.28 16 16 C -0.23 -6.29 10.25 -15.06 -0.15 -6.44 16 17 H 0.08 2.07 7.83 -52.49 -0.41 1.65 16 18 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 19 N -0.92 -25.93 10.24 55.49 0.57 -25.36 16 20 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 24 C 0.17 3.80 3.12 -3.71 -0.01 3.79 16 25 C 0.09 1.55 2.70 -66.33 -0.18 1.37 16 26 H 0.09 1.47 6.15 -51.93 -0.32 1.15 16 27 C -0.10 -1.80 7.24 -39.19 -0.28 -2.08 16 28 C -0.12 -1.91 9.68 -39.64 -0.38 -2.29 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 33 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.13 2.09 7.66 -52.49 -0.40 1.68 16 36 H 0.07 1.23 7.16 -51.93 -0.37 0.85 16 37 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 38 H 0.08 0.93 8.08 -51.93 -0.42 0.51 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.02 0.42 6.51 -51.93 -0.34 0.08 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.06 1.47 6.56 -51.93 -0.34 1.13 16 44 H 0.06 1.51 6.15 -51.93 -0.32 1.19 16 45 H 0.18 3.17 1.50 -59.47 -0.09 3.08 16 46 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 354.71 15.07 5.35 5.35 Total: -1.00 -31.87 354.71 -10.36 -42.23 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -6.79 Total: 4.31 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.47 Total: -4.16 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.52 Total: -52.20 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.87 -10.36 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076522096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.753 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds