Wall clock time and date at job start Fri Apr 10 2020 23:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46840 * 2 1 4 4 C 1.38357 * 119.85116 * 90.00122 * 3 2 1 5 5 C 1.37961 * 120.14590 * 180.02562 * 4 3 2 6 6 C 1.39578 * 119.85077 * 359.97438 * 5 4 3 7 7 C 1.47838 * 120.14433 * 179.97438 * 6 5 4 8 8 O 1.21555 * 120.00077 * 4.93023 * 7 6 5 9 9 N 1.34779 * 120.00393 * 184.92939 * 7 6 5 10 10 C 1.47397 * 125.59260 * 174.28272 * 9 7 6 11 11 C 1.54858 * 104.81008 * 204.60521 * 10 9 7 12 12 C 1.55122 * 101.77589 * 322.81291 * 11 10 9 13 13 H 1.09002 * 114.15561 * 158.73301 * 12 11 10 14 14 C 1.54233 * 108.08656 * 286.25155 * 12 11 10 15 15 N 1.46699 * 106.72801 * 136.07405 * 14 12 11 16 16 C 1.36940 * 125.32096 * 161.68765 * 15 14 12 17 17 H 1.08000 * 120.00147 * 359.73014 * 16 15 14 18 18 C 1.38817 * 120.00188 * 179.72022 * 16 15 14 19 19 N 1.31621 * 119.99637 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47614 * 270.00448 * 20 18 16 22 22 H 1.48501 * 109.47186 * 30.00657 * 20 18 16 23 23 H 1.48503 * 109.46986 * 150.00488 * 20 18 16 24 24 C 1.46627 * 109.35963 * 341.43013 * 15 14 12 25 25 C 1.46739 * 125.58280 * 354.28352 * 9 7 6 26 26 H 1.09001 * 111.84061 * 55.81610 * 25 9 7 27 27 C 1.39572 * 119.70957 * 0.24489 * 6 5 4 28 28 C 1.37961 * 119.85712 * 359.52270 * 27 6 5 29 29 H 1.09001 * 109.47426 * 59.99831 * 1 2 3 30 30 H 1.09001 * 109.46774 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47263 * 299.99704 * 1 2 3 32 32 H 1.08999 * 109.46866 * 240.00397 * 2 1 3 33 33 H 1.08995 * 109.47452 * 119.99760 * 2 1 3 34 34 H 1.08001 * 119.92891 * 0.02562 * 4 3 2 35 35 H 1.08000 * 120.07462 * 179.97438 * 5 4 3 36 36 H 1.09004 * 110.37074 * 85.77833 * 10 9 7 37 37 H 1.08999 * 110.46750 * 323.49041 * 10 9 7 38 38 H 1.08998 * 110.96424 * 204.69011 * 11 10 9 39 39 H 1.08993 * 110.99461 * 80.95052 * 11 10 9 40 40 H 1.09001 * 110.14496 * 16.70596 * 14 12 11 41 41 H 1.08999 * 109.92929 * 255.33160 * 14 12 11 42 42 H 0.96999 * 119.99907 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.75925 * 121.18080 * 24 15 14 44 44 H 1.08996 * 109.75995 * 241.88611 * 24 15 14 45 45 H 1.08000 * 120.07227 * 179.73194 * 27 6 5 46 46 H 1.08002 * 119.92978 * 180.23164 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2619 2.0702 1.2000 5 6 2.7212 3.3710 1.2071 6 6 2.9548 4.0319 0.0001 7 6 3.4464 5.4262 0.0001 8 8 3.7334 5.9694 1.0490 9 7 3.5764 6.0950 -1.1628 10 6 3.9386 7.5173 -1.2985 11 6 3.3548 7.9455 -2.6674 12 6 3.5930 6.6748 -3.5246 13 1 2.9518 6.6027 -4.4031 14 6 5.0986 6.5914 -3.8490 15 7 5.4977 5.1945 -3.6452 16 6 6.6313 4.6137 -4.1477 17 1 7.3130 5.1938 -4.7520 18 6 6.9045 3.2792 -3.8804 19 7 6.0736 2.5721 -3.1442 20 14 8.4513 2.4870 -4.5653 21 1 8.1595 1.9026 -5.8989 22 1 9.5165 3.5134 -4.6970 23 1 8.9079 1.4152 -3.6444 24 6 4.4960 4.5192 -2.8142 25 6 3.3806 5.5264 -2.5013 26 1 2.3949 5.0739 -2.6094 27 6 2.7168 3.3727 -1.2069 28 6 2.2621 2.0702 -1.2000 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0811 1.5575 2.1332 35 1 2.8996 3.8769 2.1445 36 1 5.0222 7.6350 -1.2947 37 1 3.4912 8.1029 -0.4953 38 1 3.8988 8.7980 -3.0740 39 1 2.2907 8.1673 -2.5860 40 1 5.6632 7.2415 -3.1805 41 1 5.2720 6.8812 -4.8853 42 1 6.2642 1.6395 -2.9577 43 1 4.0824 3.6677 -3.3545 44 1 4.9559 4.1787 -1.8865 45 1 2.8914 3.8799 -2.1442 46 1 2.0811 1.5576 -2.1332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076522096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:36 Heat of formation + Delta-G solvation = 32.659054 kcal Electronic energy + Delta-G solvation = -27367.699695 eV Core-core repulsion = 23837.226318 eV Total energy + Delta-G solvation = -3530.473377 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.18233 -40.12823 -39.19388 -36.43226 -35.25711 -33.90058 -33.20397 -31.73540 -30.67934 -30.14766 -28.16285 -26.62637 -25.60141 -23.89499 -23.61145 -22.64880 -21.93897 -21.17219 -20.52421 -18.93703 -18.41307 -17.33488 -17.16591 -16.67197 -16.30019 -15.97732 -15.77001 -15.62802 -15.04985 -14.78963 -14.60679 -14.48142 -14.28116 -14.14105 -14.07357 -13.98352 -13.42851 -13.27470 -13.01028 -12.94672 -12.79625 -12.61646 -12.42765 -12.22733 -12.12087 -12.00255 -11.88123 -11.75706 -11.74425 -11.47229 -11.28226 -10.88875 -10.71664 -9.88458 -9.81687 -9.52707 -8.86930 -7.83364 -5.18769 -0.10438 0.49319 1.44861 1.46348 1.54154 1.77423 1.97981 2.48784 2.89776 3.31631 3.36177 3.39283 3.66161 3.79738 3.89220 3.90279 3.95322 4.06994 4.18007 4.29232 4.32906 4.44988 4.47027 4.53499 4.56006 4.63036 4.69997 4.74253 4.78760 4.87155 5.01560 5.04557 5.10856 5.11570 5.12918 5.16895 5.26319 5.37488 5.38650 5.41382 5.45638 5.47506 5.53453 5.66351 5.71627 6.01915 6.20455 6.44301 7.03842 7.11832 7.79788 8.40784 9.24853 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009881 B = 0.005957 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2833.108415 B = 4699.291490 C = 6602.074700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 C -0.055 4.055 4 C -0.133 4.133 5 C -0.073 4.073 6 C -0.164 4.164 7 C 0.568 3.432 8 O -0.588 6.588 9 N -0.598 5.598 10 C 0.099 3.901 11 C -0.103 4.103 12 C -0.097 4.097 13 H 0.134 0.866 14 C 0.132 3.868 15 N -0.625 5.625 16 C -0.245 4.245 17 H 0.081 0.919 18 C -0.059 4.059 19 N -0.939 5.939 20 Si 0.972 3.028 21 H -0.281 1.281 22 H -0.274 1.274 23 H -0.300 1.300 24 C 0.187 3.813 25 C 0.094 3.906 26 H 0.116 0.884 27 C -0.111 4.111 28 C -0.132 4.132 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.154 0.846 35 H 0.127 0.873 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.017 0.983 41 H 0.048 0.952 42 H 0.245 0.755 43 H 0.035 0.965 44 H 0.008 0.992 45 H 0.167 0.833 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 1.535 2.164 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.124 4.124 3 C -0.055 4.055 4 C -0.150 4.150 5 C -0.092 4.092 6 C -0.167 4.167 7 C 0.360 3.640 8 O -0.471 6.471 9 N -0.329 5.329 10 C -0.023 4.023 11 C -0.141 4.141 12 C -0.116 4.116 13 H 0.152 0.848 14 C 0.007 3.993 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.099 0.901 18 C -0.253 4.253 19 N -0.587 5.587 20 Si 0.801 3.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H -0.227 1.227 24 C 0.061 3.939 25 C -0.010 4.010 26 H 0.133 0.867 27 C -0.128 4.128 28 C -0.150 4.150 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.171 0.829 35 H 0.145 0.855 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.128 0.872 39 H 0.121 0.879 40 H 0.035 0.965 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.026 0.974 45 H 0.183 0.817 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.618 1.625 2.763 13.991 hybrid contribution 1.582 -0.660 -0.073 1.716 sum -12.037 0.965 2.691 12.371 Atomic orbital electron populations 1.21712 0.93197 1.02743 1.02161 1.20670 0.97268 0.90600 1.03848 1.20479 0.95230 0.97232 0.92604 1.21195 1.01099 0.93802 0.98953 1.21303 0.95994 0.95169 0.96758 1.19868 1.07217 0.93889 0.95711 1.18345 0.76991 0.86407 0.82209 1.90655 1.53783 1.70647 1.32060 1.48293 1.67201 1.12191 1.05218 1.22410 0.99475 0.80414 0.99959 1.22772 1.03107 0.96962 0.91219 1.23282 0.96800 0.93744 0.97810 0.84847 1.21631 0.93302 0.85676 0.98694 1.44519 1.23666 1.07484 1.59436 1.19377 0.98468 0.93788 1.25739 0.90108 1.25550 1.01566 0.97317 1.00866 1.70133 1.37870 1.07813 1.42898 0.85178 0.79582 0.77833 0.77318 1.20802 1.19942 1.22654 1.21284 0.87452 0.91679 0.93468 1.23021 0.99470 0.96470 0.82011 0.86656 1.23111 0.93995 0.96292 0.99440 1.21206 1.00630 0.94351 0.98772 0.92922 0.90646 0.92335 0.90668 0.89571 0.82857 0.85483 0.93337 0.90025 0.87180 0.87910 0.96505 0.93340 0.94544 0.94716 0.97400 0.81695 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.89 71.98 0.71 -1.60 16 2 C -0.09 -1.76 6.06 29.85 0.18 -1.58 16 3 C -0.06 -1.53 5.14 -19.81 -0.10 -1.63 16 4 C -0.13 -3.73 9.68 22.23 0.22 -3.51 16 5 C -0.07 -2.52 9.60 22.53 0.22 -2.30 16 6 C -0.16 -6.39 5.69 -20.09 -0.11 -6.50 16 7 C 0.57 24.03 7.38 86.78 0.64 24.67 16 8 O -0.59 -27.55 16.65 -3.89 -0.06 -27.62 16 9 N -0.60 -22.42 2.98 -805.87 -2.40 -24.83 16 10 C 0.10 3.11 6.41 86.84 0.56 3.67 16 11 C -0.10 -2.29 6.35 31.96 0.20 -2.09 16 12 C -0.10 -2.78 4.35 -8.86 -0.04 -2.82 16 13 H 0.13 3.06 8.14 -2.39 -0.02 3.04 16 14 C 0.13 4.99 6.44 86.76 0.56 5.54 16 15 N -0.62 -31.05 3.38 -697.77 -2.36 -33.41 16 16 C -0.24 -13.50 10.25 84.03 0.86 -12.63 16 17 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 18 C -0.06 -3.32 5.48 84.86 0.47 -2.86 16 19 N -0.94 -55.01 10.24 21.65 0.22 -54.79 16 20 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 24 C 0.19 8.78 3.12 86.53 0.27 9.05 16 25 C 0.09 3.32 2.70 45.90 0.12 3.44 16 26 H 0.12 3.58 6.15 -2.39 -0.01 3.56 16 27 C -0.11 -4.09 7.24 22.53 0.16 -3.93 16 28 C -0.13 -4.25 9.68 22.23 0.22 -4.04 16 29 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 33 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 34 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 35 H 0.13 4.28 7.66 -2.91 -0.02 4.26 16 36 H 0.05 1.72 7.16 -2.39 -0.02 1.70 16 37 H 0.08 2.41 8.09 -2.39 -0.02 2.39 16 38 H 0.11 1.97 8.08 -2.39 -0.02 1.95 16 39 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.02 0.67 6.51 -2.39 -0.02 0.65 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 42 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 43 H 0.03 1.79 6.56 -2.39 -0.02 1.77 16 44 H 0.01 0.45 6.15 -2.39 -0.01 0.43 16 45 H 0.17 6.24 1.50 -9.47 -0.01 6.23 16 46 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 Total: -1.00 -73.06 354.71 3.52 -69.54 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.97 Total: 22.47 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 5.13 Total: 0.88 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -4.54 Total: -113.02 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.06 Total: -27.62 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.06 3.52 -69.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076522096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.195 kcal (2) G-P(sol) polarization free energy of solvation -73.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds