Wall clock time and date at job start Fri Apr 10 2020 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 120.00296 * 2 1 4 4 C 1.38204 * 119.99843 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00515 * 0.09078 * 4 3 2 6 6 C 1.38207 * 119.99549 * 359.97438 * 5 4 3 7 7 C 1.38220 * 119.99654 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.00039 * 0.27115 * 7 2 1 9 9 C 1.50703 * 109.46672 * 84.72700 * 8 7 2 10 10 O 1.21285 * 120.00329 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99873 * 179.97438 * 9 8 7 12 12 C 1.47356 * 125.53009 * 359.69672 * 11 9 8 13 13 C 1.55149 * 104.78641 * 156.48226 * 12 11 9 14 14 C 1.54806 * 101.40104 * 37.52366 * 13 12 11 15 15 H 1.08995 * 112.64155 * 85.17465 * 14 13 12 16 16 C 1.53265 * 109.74298 * 212.12152 * 14 13 12 17 17 N 1.46584 * 108.15459 * 95.76588 * 16 14 13 18 18 C 1.36942 * 125.30438 * 177.88206 * 17 16 14 19 19 H 1.07999 * 119.99700 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00129 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00170 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46915 * 90.00401 * 22 20 18 24 24 H 1.48501 * 109.47236 * 210.00283 * 22 20 18 25 25 H 1.48500 * 109.47225 * 330.00712 * 22 20 18 26 26 C 1.47550 * 109.62711 * 358.29035 * 17 16 14 27 27 C 1.47217 * 125.53067 * 179.97438 * 11 9 8 28 28 H 1.08996 * 112.28186 * 56.21650 * 27 11 9 29 29 H 1.08998 * 109.46786 * 269.93225 * 1 2 3 30 30 H 1.08997 * 109.47118 * 29.92943 * 1 2 3 31 31 H 1.08996 * 109.47165 * 149.93371 * 1 2 3 32 32 H 1.08005 * 119.99925 * 0.08700 * 3 2 1 33 33 H 1.08012 * 119.99953 * 180.10836 * 4 3 2 34 34 H 1.07991 * 120.00050 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.00334 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47209 * 204.72787 * 8 7 2 37 37 H 1.09003 * 109.47302 * 324.73240 * 8 7 2 38 38 H 1.08997 * 110.35138 * 275.43721 * 12 11 9 39 39 H 1.08996 * 110.35132 * 37.72190 * 12 11 9 40 40 H 1.08997 * 111.21070 * 279.43766 * 13 12 11 41 41 H 1.09007 * 110.95516 * 155.49151 * 13 12 11 42 42 H 1.09003 * 109.73163 * 215.44430 * 16 14 13 43 43 H 1.08992 * 109.73863 * 336.07765 * 16 14 13 44 44 H 0.96996 * 120.00093 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.81173 * 258.08236 * 26 17 16 46 46 H 1.09000 * 110.47640 * 136.49914 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2718 -0.0002 -0.0008 6 6 3.5806 -1.1971 -0.0022 7 6 2.1981 -1.1971 -0.0005 8 6 1.4445 -2.5021 -0.0073 9 6 1.0861 -2.8678 -1.4247 10 8 1.4102 -2.1401 -2.3392 11 7 0.4054 -4.0035 -1.6760 12 6 -0.0420 -4.9757 -0.6631 13 6 -1.2343 -5.7162 -1.3244 14 6 -0.7532 -5.8213 -2.7920 15 1 -0.1180 -6.6902 -2.9642 16 6 -1.9580 -5.7609 -3.7374 17 7 -2.1147 -4.3753 -4.1896 18 6 -3.0592 -3.9348 -5.0779 19 1 -3.7663 -4.6312 -5.5038 20 6 -3.1085 -2.5930 -5.4299 21 7 -2.2471 -1.7442 -4.9104 22 14 -4.3974 -1.9919 -6.6410 23 1 -5.6202 -1.5868 -5.9021 24 1 -3.8650 -0.8273 -7.3932 25 1 -4.7318 -3.0836 -7.5906 26 6 -1.0920 -3.5263 -3.5491 27 6 -0.0069 -4.4770 -3.0076 28 1 0.8367 -4.5748 -3.6909 29 1 -0.3633 -0.0012 1.0277 30 1 -0.3633 0.8906 -0.5127 31 1 -0.3633 -0.8894 -0.5148 32 1 1.6584 2.1326 0.0014 33 1 4.1206 2.1325 0.0023 34 1 5.3517 -0.0002 0.0000 35 1 4.1205 -2.1324 -0.0028 36 1 2.0694 -3.2847 0.4229 37 1 0.5338 -2.3989 0.5826 38 1 0.7599 -5.6760 -0.4295 39 1 -0.3702 -4.4594 0.2390 40 1 -2.1505 -5.1299 -1.2543 41 1 -1.3707 -6.7048 -0.8860 42 1 -1.7856 -6.4108 -4.5953 43 1 -2.8566 -6.0795 -3.2093 44 1 -2.2817 -0.8065 -5.1561 45 1 -1.5385 -2.9663 -2.7274 46 1 -0.6561 -2.8406 -4.2756 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076551302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:43 Heat of formation + Delta-G solvation = 22.635878 kcal Electronic energy + Delta-G solvation = -26885.953638 eV Core-core repulsion = 23355.045624 eV Total energy + Delta-G solvation = -3530.908014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.26108 -39.27778 -37.55233 -34.85500 -33.19894 -32.30073 -31.95626 -30.61178 -28.96131 -27.79041 -26.75873 -26.13582 -24.43090 -22.73584 -21.98082 -21.01870 -20.29990 -19.49670 -18.53885 -17.03199 -16.58708 -16.35251 -15.86795 -15.39445 -15.00548 -14.68803 -14.52032 -14.12980 -13.63178 -13.38808 -13.30720 -13.04780 -12.93893 -12.70797 -12.55524 -12.13254 -12.11554 -11.95552 -11.84150 -11.74566 -11.50076 -11.19149 -11.02515 -10.87355 -10.84571 -10.76470 -10.41777 -10.15294 -10.00075 -9.74703 -9.66882 -9.39980 -8.67126 -8.56681 -8.42747 -8.12749 -6.78659 -5.59319 -3.01146 1.44206 1.52248 3.08896 3.34716 3.43381 3.47896 3.50915 3.90530 4.53112 4.71555 4.76653 4.82288 4.87963 5.05779 5.09670 5.14586 5.25164 5.31504 5.44670 5.48834 5.49489 5.57397 5.60791 5.66935 5.71736 5.78354 5.81867 5.82811 5.94528 6.00457 6.04904 6.16237 6.25082 6.36375 6.36478 6.55954 6.56548 6.59364 6.65266 6.70215 6.78357 6.90942 7.12784 7.58572 7.68000 7.94645 8.04387 8.39423 8.66642 9.26912 9.88462 10.50822 11.45288 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.004308 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.500815 B = 6498.059949 C = 7961.303031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.061 4.061 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.064 4.064 8 C -0.099 4.099 9 C 0.525 3.475 10 O -0.516 6.516 11 N -0.611 5.611 12 C 0.101 3.899 13 C -0.122 4.122 14 C -0.109 4.109 15 H 0.086 0.914 16 C 0.147 3.853 17 N -0.604 5.604 18 C -0.232 4.232 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.913 5.913 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.171 3.829 27 C 0.114 3.886 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.022 0.978 43 H 0.025 0.975 44 H 0.253 0.747 45 H 0.021 0.979 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.493 -2.851 15.163 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.062 4.062 3 C -0.139 4.139 4 C -0.138 4.138 5 C -0.147 4.147 6 C -0.123 4.123 7 C -0.064 4.064 8 C -0.138 4.138 9 C 0.312 3.688 10 O -0.390 6.390 11 N -0.347 5.347 12 C -0.022 4.022 13 C -0.160 4.160 14 C -0.129 4.129 15 H 0.105 0.895 16 C 0.021 3.979 17 N -0.331 5.331 18 C -0.361 4.361 19 H 0.095 0.905 20 C -0.203 4.203 21 N -0.561 5.561 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.045 3.955 27 C 0.010 3.990 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.040 0.960 43 H 0.043 0.957 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.650 -2.167 14.575 17.614 hybrid contribution -0.654 0.279 -0.601 0.930 sum 8.996 -1.888 13.974 16.727 Atomic orbital electron populations 1.20849 0.91120 1.03947 1.01626 1.19748 0.96101 0.92528 0.97777 1.20985 0.94248 0.97385 1.01294 1.21068 0.94299 0.97860 1.00542 1.21003 0.99501 0.92531 1.01705 1.20922 0.93368 0.98065 0.99926 1.19168 0.93385 0.93279 1.00569 1.20672 1.01617 0.96025 0.95524 1.19998 0.78068 0.79975 0.90742 1.90783 1.52746 1.49092 1.46408 1.48587 1.56019 1.21614 1.08462 1.22334 0.96528 0.91437 0.91921 1.22833 0.97940 1.00278 0.94962 1.22856 0.97595 0.97006 0.95415 0.89529 1.20946 0.93815 0.88859 0.94319 1.44410 1.35774 1.01906 1.51033 1.19023 1.07487 0.92515 1.17038 0.90451 1.24834 0.99162 0.96019 1.00308 1.69941 1.37032 1.02826 1.46260 0.86134 0.80746 0.78289 0.80661 1.21663 1.21661 1.20680 1.21774 0.86131 0.90879 0.96693 1.22939 0.97921 0.94615 0.83484 0.90283 0.91400 0.91232 0.91055 0.86211 0.86405 0.86396 0.86440 0.88633 0.88237 0.91825 0.91165 0.89924 0.90451 0.96008 0.95710 0.93672 0.96127 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.69 9.22 36.01 0.33 -1.36 16 2 C -0.06 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.63 9.70 -39.59 -0.38 -2.01 16 4 C -0.12 -1.47 10.05 -39.58 -0.40 -1.87 16 5 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 6 C -0.10 -1.38 9.68 -39.59 -0.38 -1.77 16 7 C -0.06 -0.92 4.37 -104.62 -0.46 -1.38 16 8 C -0.10 -1.30 4.15 -29.03 -0.12 -1.42 16 9 C 0.52 9.43 6.87 -10.98 -0.08 9.35 16 10 O -0.52 -11.81 16.12 5.55 0.09 -11.72 16 11 N -0.61 -10.43 2.85 -161.57 -0.46 -10.89 16 12 C 0.10 1.26 6.68 -2.44 -0.02 1.24 16 13 C -0.12 -1.66 6.26 -24.64 -0.15 -1.81 16 14 C -0.11 -1.81 3.91 -88.33 -0.35 -2.15 16 15 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 16 C 0.15 3.00 6.66 -3.86 -0.03 2.97 16 17 N -0.60 -15.72 3.40 -171.49 -0.58 -16.30 16 18 C -0.23 -6.60 10.25 -15.06 -0.15 -6.75 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 21 N -0.91 -27.96 10.16 55.49 0.56 -27.40 16 22 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.17 4.36 4.79 -2.90 -0.01 4.34 16 27 C 0.11 2.28 3.84 -65.77 -0.25 2.02 16 28 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 31 H 0.07 1.18 6.15 -51.93 -0.32 0.86 16 32 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 33 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 34 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 36 H 0.10 0.98 8.05 -51.93 -0.42 0.57 16 37 H 0.10 1.16 6.70 -51.93 -0.35 0.81 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.74 7.49 -51.93 -0.39 0.35 16 40 H 0.08 1.32 7.88 -51.93 -0.41 0.91 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.03 0.49 7.74 -51.93 -0.40 0.09 16 44 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.02 0.58 7.94 -51.93 -0.41 0.17 16 46 H 0.09 2.83 6.29 -51.93 -0.33 2.51 16 LS Contribution 364.80 15.07 5.50 5.50 Total: -1.00 -34.85 364.80 -10.69 -45.54 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.22 Total: 2.06 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: -3.56 Total: -4.37 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.48 Total: -54.59 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.85 -10.69 -45.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076551302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.174 kcal (2) G-P(sol) polarization free energy of solvation -34.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds