Wall clock time and date at job start Fri Apr 10 2020 23:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38254 * 120.00296 * 2 1 4 4 C 1.38204 * 119.99843 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00515 * 0.09078 * 4 3 2 6 6 C 1.38207 * 119.99549 * 359.97438 * 5 4 3 7 7 C 1.38220 * 119.99654 * 180.02562 * 2 1 3 8 8 C 1.50702 * 120.00039 * 0.27115 * 7 2 1 9 9 C 1.50703 * 109.46672 * 84.72700 * 8 7 2 10 10 O 1.21285 * 120.00329 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99873 * 179.97438 * 9 8 7 12 12 C 1.47356 * 125.53009 * 359.69672 * 11 9 8 13 13 C 1.55149 * 104.78641 * 156.48226 * 12 11 9 14 14 C 1.54806 * 101.40104 * 37.52366 * 13 12 11 15 15 H 1.08995 * 112.64155 * 85.17465 * 14 13 12 16 16 C 1.53265 * 109.74298 * 212.12152 * 14 13 12 17 17 N 1.46584 * 108.15459 * 95.76588 * 16 14 13 18 18 C 1.36942 * 125.30438 * 177.88206 * 17 16 14 19 19 H 1.07999 * 119.99700 * 0.02562 * 18 17 16 20 20 C 1.38805 * 120.00129 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00024 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00170 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.46915 * 90.00401 * 22 20 18 24 24 H 1.48501 * 109.47236 * 210.00283 * 22 20 18 25 25 H 1.48500 * 109.47225 * 330.00712 * 22 20 18 26 26 C 1.47550 * 109.62711 * 358.29035 * 17 16 14 27 27 C 1.47217 * 125.53067 * 179.97438 * 11 9 8 28 28 H 1.08996 * 112.28186 * 56.21650 * 27 11 9 29 29 H 1.08998 * 109.46786 * 269.93225 * 1 2 3 30 30 H 1.08997 * 109.47118 * 29.92943 * 1 2 3 31 31 H 1.08996 * 109.47165 * 149.93371 * 1 2 3 32 32 H 1.08005 * 119.99925 * 0.08700 * 3 2 1 33 33 H 1.08012 * 119.99953 * 180.10836 * 4 3 2 34 34 H 1.07991 * 120.00050 * 180.02562 * 5 4 3 35 35 H 1.08000 * 120.00334 * 180.02562 * 6 5 4 36 36 H 1.08996 * 109.47209 * 204.72787 * 8 7 2 37 37 H 1.09003 * 109.47302 * 324.73240 * 8 7 2 38 38 H 1.08997 * 110.35138 * 275.43721 * 12 11 9 39 39 H 1.08996 * 110.35132 * 37.72190 * 12 11 9 40 40 H 1.08997 * 111.21070 * 279.43766 * 13 12 11 41 41 H 1.09007 * 110.95516 * 155.49151 * 13 12 11 42 42 H 1.09003 * 109.73163 * 215.44430 * 16 14 13 43 43 H 1.08992 * 109.73863 * 336.07765 * 16 14 13 44 44 H 0.96996 * 120.00093 * 180.02562 * 21 20 18 45 45 H 1.09000 * 109.81173 * 258.08236 * 26 17 16 46 46 H 1.09000 * 110.47640 * 136.49914 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2718 -0.0002 -0.0008 6 6 3.5806 -1.1971 -0.0022 7 6 2.1981 -1.1971 -0.0005 8 6 1.4445 -2.5021 -0.0073 9 6 1.0861 -2.8678 -1.4247 10 8 1.4102 -2.1401 -2.3392 11 7 0.4054 -4.0035 -1.6760 12 6 -0.0420 -4.9757 -0.6631 13 6 -1.2343 -5.7162 -1.3244 14 6 -0.7532 -5.8213 -2.7920 15 1 -0.1180 -6.6902 -2.9642 16 6 -1.9580 -5.7609 -3.7374 17 7 -2.1147 -4.3753 -4.1896 18 6 -3.0592 -3.9348 -5.0779 19 1 -3.7663 -4.6312 -5.5038 20 6 -3.1085 -2.5930 -5.4299 21 7 -2.2471 -1.7442 -4.9104 22 14 -4.3974 -1.9919 -6.6410 23 1 -5.6202 -1.5868 -5.9021 24 1 -3.8650 -0.8273 -7.3932 25 1 -4.7318 -3.0836 -7.5906 26 6 -1.0920 -3.5263 -3.5491 27 6 -0.0069 -4.4770 -3.0076 28 1 0.8367 -4.5748 -3.6909 29 1 -0.3633 -0.0012 1.0277 30 1 -0.3633 0.8906 -0.5127 31 1 -0.3633 -0.8894 -0.5148 32 1 1.6584 2.1326 0.0014 33 1 4.1206 2.1325 0.0023 34 1 5.3517 -0.0002 0.0000 35 1 4.1205 -2.1324 -0.0028 36 1 2.0694 -3.2847 0.4229 37 1 0.5338 -2.3989 0.5826 38 1 0.7599 -5.6760 -0.4295 39 1 -0.3702 -4.4594 0.2390 40 1 -2.1505 -5.1299 -1.2543 41 1 -1.3707 -6.7048 -0.8860 42 1 -1.7856 -6.4108 -4.5953 43 1 -2.8566 -6.0795 -3.2093 44 1 -2.2817 -0.8065 -5.1561 45 1 -1.5385 -2.9663 -2.7274 46 1 -0.6561 -2.8406 -4.2756 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076551302.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:43 Heat of formation + Delta-G solvation = 1.307496 kcal Electronic energy + Delta-G solvation = -26886.878506 eV Core-core repulsion = 23355.045624 eV Total energy + Delta-G solvation = -3531.832882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.59570 -40.43325 -38.99796 -36.58444 -34.35806 -33.97867 -33.08699 -32.18514 -30.57910 -29.10189 -28.12435 -27.40395 -26.36680 -23.98746 -23.01676 -22.39898 -21.84549 -20.85762 -19.94025 -18.92839 -18.09964 -17.45828 -17.06164 -16.84101 -16.41066 -16.17219 -15.77666 -15.61857 -15.07129 -15.02318 -14.51839 -14.37480 -14.05076 -14.02961 -13.82699 -13.69628 -13.42928 -13.29635 -13.19838 -12.99476 -12.90613 -12.83121 -12.77200 -12.55872 -12.18598 -11.90146 -11.84935 -11.82435 -11.67609 -11.46033 -11.40534 -10.85967 -10.75122 -9.67615 -9.56226 -9.45064 -8.92485 -7.80417 -5.25355 0.43023 0.52235 1.40901 1.44185 1.53239 1.73825 2.07657 2.46976 2.88251 3.30381 3.44317 3.64641 3.69866 3.77513 3.89398 3.99854 4.05681 4.10632 4.17736 4.34790 4.35950 4.40537 4.41624 4.50799 4.51577 4.58480 4.67289 4.74777 4.75481 4.82228 4.87961 4.92631 4.95775 5.12450 5.18598 5.20460 5.25463 5.28770 5.46239 5.50133 5.57772 5.61123 5.62701 5.74980 5.81183 6.16161 6.22008 6.68745 7.05128 7.31064 7.76596 8.37878 9.21981 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013672 B = 0.004308 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.500815 B = 6498.059949 C = 7961.303031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.124 4.124 5 C -0.134 4.134 6 C -0.115 4.115 7 C -0.085 4.085 8 C -0.085 4.085 9 C 0.517 3.483 10 O -0.580 6.580 11 N -0.613 5.613 12 C 0.098 3.902 13 C -0.115 4.115 14 C -0.093 4.093 15 H 0.128 0.872 16 C 0.138 3.862 17 N -0.628 5.628 18 C -0.243 4.243 19 H 0.088 0.912 20 C -0.071 4.071 21 N -0.949 5.949 22 Si 0.980 3.020 23 H -0.284 1.284 24 H -0.299 1.299 25 H -0.263 1.263 26 C 0.191 3.809 27 C 0.117 3.883 28 H 0.062 0.938 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.040 0.960 32 H 0.130 0.870 33 H 0.144 0.856 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.125 0.875 42 H 0.028 0.972 43 H 0.037 0.963 44 H 0.241 0.759 45 H -0.019 1.019 46 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.285 -5.406 17.398 20.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.156 4.156 4 C -0.142 4.142 5 C -0.152 4.152 6 C -0.133 4.133 7 C -0.085 4.085 8 C -0.124 4.124 9 C 0.307 3.693 10 O -0.460 6.460 11 N -0.347 5.347 12 C -0.023 4.023 13 C -0.153 4.153 14 C -0.112 4.112 15 H 0.146 0.854 16 C 0.013 3.987 17 N -0.354 5.354 18 C -0.372 4.372 19 H 0.106 0.894 20 C -0.263 4.263 21 N -0.598 5.598 22 Si 0.808 3.192 23 H -0.210 1.210 24 H -0.226 1.226 25 H -0.187 1.187 26 C 0.065 3.935 27 C 0.012 3.988 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.148 0.852 33 H 0.162 0.838 34 H 0.164 0.836 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.144 0.856 42 H 0.046 0.954 43 H 0.055 0.945 44 H 0.051 0.949 45 H -0.001 1.001 46 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 10.421 -4.804 16.855 20.391 hybrid contribution -0.904 1.066 -1.327 1.927 sum 9.517 -3.738 15.528 18.592 Atomic orbital electron populations 1.20779 0.91587 1.01886 1.02694 1.19963 0.96153 0.93602 0.99069 1.21252 0.95233 0.97516 1.01610 1.21436 0.93957 0.99266 0.99535 1.21412 1.01032 0.92172 1.00589 1.21266 0.93095 0.99460 0.99457 1.19413 0.94272 0.93554 1.01275 1.20676 1.02910 0.96716 0.92114 1.20946 0.77003 0.79216 0.92156 1.90750 1.55412 1.51062 1.48734 1.48712 1.55340 1.22319 1.08327 1.22733 0.97303 0.91153 0.91145 1.22852 0.96956 1.02514 0.92934 1.22903 0.95758 0.95964 0.96562 0.85362 1.21242 0.96231 0.85724 0.95525 1.44744 1.35418 1.04469 1.50815 1.19507 1.07833 0.92881 1.16969 0.89419 1.25762 1.01528 0.96408 1.02614 1.70288 1.39135 1.02375 1.48050 0.85052 0.78018 0.77639 0.78494 1.21047 1.22564 1.18705 1.21239 0.87216 0.91277 0.93736 1.22577 0.95721 0.95413 0.85075 0.91946 0.88702 0.92248 0.94066 0.85178 0.83842 0.83646 0.84437 0.84718 0.86693 0.87559 0.88734 0.93018 0.85637 0.95393 0.94484 0.94909 1.00143 0.94860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.38 9.22 71.24 0.66 -2.72 16 2 C -0.09 -2.65 5.88 -19.86 -0.12 -2.76 16 3 C -0.14 -3.74 9.70 22.27 0.22 -3.52 16 4 C -0.12 -2.91 10.05 22.27 0.22 -2.69 16 5 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 6 C -0.11 -2.87 9.68 22.27 0.22 -2.66 16 7 C -0.08 -2.41 4.37 -19.86 -0.09 -2.50 16 8 C -0.08 -2.13 4.15 29.10 0.12 -2.00 16 9 C 0.52 18.85 6.87 87.66 0.60 19.45 16 10 O -0.58 -28.33 16.12 -3.04 -0.05 -28.38 16 11 N -0.61 -20.50 2.85 -783.47 -2.24 -22.74 16 12 C 0.10 2.03 6.68 86.95 0.58 2.62 16 13 C -0.11 -2.69 6.26 31.95 0.20 -2.49 16 14 C -0.09 -2.83 3.91 -9.31 -0.04 -2.87 16 15 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 16 C 0.14 5.48 6.66 86.45 0.58 6.06 16 17 N -0.63 -33.77 3.40 -696.48 -2.37 -36.14 16 18 C -0.24 -14.21 10.25 84.03 0.86 -13.35 16 19 H 0.09 4.81 7.83 -2.91 -0.02 4.78 16 20 C -0.07 -4.26 5.48 84.86 0.47 -3.80 16 21 N -0.95 -62.28 10.16 21.65 0.22 -62.06 16 22 Si 0.98 48.13 29.55 68.60 2.03 50.16 16 23 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 25 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.19 10.43 4.79 86.55 0.41 10.85 16 27 C 0.12 4.76 3.84 46.00 0.18 4.93 16 28 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 1.82 8.08 -2.39 -0.02 1.80 16 31 H 0.04 1.46 6.15 -2.39 -0.01 1.44 16 32 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.14 2.51 8.06 -2.90 -0.02 2.48 16 34 H 0.15 2.41 8.06 -2.92 -0.02 2.39 16 35 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.13 2.26 8.05 -2.39 -0.02 2.24 16 37 H 0.12 2.49 6.70 -2.39 -0.02 2.47 16 38 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.09 1.57 7.49 -2.39 -0.02 1.55 16 40 H 0.05 1.55 7.88 -2.39 -0.02 1.53 16 41 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.04 1.40 7.74 -2.39 -0.02 1.39 16 44 H 0.24 15.61 8.31 -92.71 -0.77 14.83 16 45 H -0.02 -1.18 7.94 -2.39 -0.02 -1.20 16 46 H 0.03 2.20 6.29 -2.39 -0.02 2.19 16 Total: -1.00 -85.89 364.80 3.85 -82.04 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.96 Total: 17.41 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.29 Total: -0.28 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -4.38 Total: -120.94 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: -0.05 Total: -28.38 kcal Atomic # 14 Polarization: 48.13 SS G_CDS: 2.03 Total: 50.16 kcal Total: -85.89 3.85 -82.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076551302.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.346 kcal (2) G-P(sol) polarization free energy of solvation -85.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds