Wall clock time and date at job start Fri Apr 10 2020 23:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37983 * 120.07359 * 2 1 4 4 C 1.38339 * 120.14325 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.29550 * 0.02562 * 4 3 2 6 6 C 1.37944 * 120.13869 * 359.74802 * 5 4 3 7 7 C 1.39556 * 120.07295 * 180.02562 * 2 1 3 8 8 C 1.47845 * 120.14472 * 359.96336 * 7 2 1 9 9 O 1.21549 * 119.99882 * 353.98036 * 8 7 2 10 10 N 1.34777 * 120.00038 * 173.99050 * 8 7 2 11 11 C 1.46494 * 119.99897 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.88734 * 336.34635 * 11 10 8 13 13 C 1.54252 * 113.75170 * 107.77119 * 11 10 8 14 14 C 1.53954 * 87.19242 * 139.21354 * 13 11 10 15 15 H 1.08994 * 113.66254 * 220.75832 * 14 13 11 16 16 N 1.46493 * 113.65835 * 89.78702 * 14 13 11 17 17 C 1.36936 * 119.99814 * 105.74364 * 16 14 13 18 18 H 1.07999 * 119.99974 * 0.27101 * 17 16 14 19 19 C 1.38817 * 120.00326 * 180.27215 * 17 16 14 20 20 N 1.31613 * 119.99987 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99796 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47230 * 89.99777 * 21 19 17 23 23 H 1.48506 * 109.47129 * 209.99861 * 21 19 17 24 24 H 1.48500 * 109.47206 * 329.99749 * 21 19 17 25 25 C 1.52906 * 113.66518 * 204.99490 * 11 10 8 26 26 C 1.52916 * 121.13405 * 346.26408 * 25 11 10 27 27 C 1.53945 * 86.78415 * 100.81278 * 26 25 11 28 28 C 1.52914 * 121.13459 * 94.81631 * 25 11 10 29 29 H 1.08998 * 109.47397 * 263.43829 * 1 2 3 30 30 H 1.09007 * 109.46911 * 23.43403 * 1 2 3 31 31 H 1.08999 * 109.47129 * 143.43543 * 1 2 3 32 32 H 1.08004 * 119.92867 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.85339 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.93055 * 180.02562 * 5 4 3 35 35 H 1.08006 * 120.06511 * 180.27344 * 6 5 4 36 36 H 0.96998 * 119.99461 * 359.97438 * 10 8 7 37 37 H 1.09005 * 113.57579 * 24.66269 * 13 11 10 38 38 H 1.08998 * 113.67156 * 253.78202 * 13 11 10 39 39 H 0.97003 * 120.00564 * 286.01785 * 16 14 13 40 40 H 0.97006 * 119.99627 * 179.97438 * 20 19 17 41 41 H 1.09002 * 113.65873 * 215.29276 * 26 25 11 42 42 H 1.08994 * 113.65834 * 346.33837 * 26 25 11 43 43 H 1.08997 * 113.58256 * 270.12418 * 27 26 25 44 44 H 1.09000 * 113.64680 * 139.34490 * 27 26 25 45 45 H 1.08999 * 113.66106 * 13.65717 * 28 25 11 46 46 H 1.09003 * 113.66454 * 144.71176 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2814 0.0018 0.0005 6 6 3.6022 -1.1989 0.0053 7 6 2.2063 -1.2077 -0.0005 8 6 1.4719 -2.4909 -0.0003 9 8 0.2616 -2.4984 0.1108 10 7 2.1446 -3.6523 -0.1230 11 6 1.4170 -4.9238 -0.1222 12 1 0.4496 -4.8583 0.3757 13 6 1.3569 -5.6061 -1.5043 14 6 1.6017 -6.9385 -0.7730 15 1 2.2908 -7.6032 -1.2938 16 7 0.3713 -7.6114 -0.3496 17 6 -0.0693 -8.7197 -1.0225 18 1 0.4926 -9.1002 -1.8626 19 6 -1.2383 -9.3541 -0.6249 20 7 -1.6619 -10.4190 -1.2720 21 14 -2.2107 -8.6955 0.8277 22 1 -3.2061 -7.7034 0.3481 23 1 -2.9141 -9.8164 1.5016 24 1 -1.2849 -8.0432 1.7883 25 6 2.2620 -6.1142 0.3327 26 6 3.7838 -6.0089 0.4390 27 6 3.5791 -5.8346 1.9548 28 6 2.2456 -6.5855 1.7873 29 1 -0.3634 -0.1174 1.0209 30 1 -0.3633 0.9430 -0.4087 31 1 -0.3633 -0.8254 -0.6122 32 1 1.6584 2.1294 0.0004 33 1 4.1183 2.1331 0.0010 34 1 5.3613 0.0100 0.0014 35 1 4.1494 -2.1300 0.0097 36 1 3.1105 -3.6462 -0.2119 37 1 2.1713 -5.3174 -2.1688 38 1 0.3787 -5.5437 -1.9810 39 1 -0.1335 -7.2697 0.4049 40 1 -2.4786 -10.8625 -0.9939 41 1 4.3056 -6.9275 0.1707 42 1 4.1965 -5.1271 -0.0510 43 1 3.4590 -4.7957 2.2620 44 1 4.3094 -6.3725 2.5593 45 1 1.4296 -6.1642 2.3745 46 1 2.3350 -7.6662 1.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078542017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:48 Heat of formation + Delta-G solvation = 50.366057 kcal Electronic energy + Delta-G solvation = -26365.568752 eV Core-core repulsion = 22835.863209 eV Total energy + Delta-G solvation = -3529.705543 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.94467 -39.95335 -38.12487 -35.25092 -34.39418 -32.85843 -32.50670 -31.28059 -30.07149 -27.25022 -25.69940 -25.00048 -24.31645 -23.60359 -22.54850 -21.54632 -20.50155 -20.20314 -18.62335 -17.83625 -17.05323 -16.32227 -15.94893 -15.50317 -15.26836 -15.23080 -14.88828 -14.73145 -14.29146 -13.72890 -13.50589 -13.35821 -12.96797 -12.84268 -12.53709 -12.34787 -12.25232 -12.22823 -12.05365 -11.98644 -11.87902 -11.69396 -11.35225 -11.09555 -10.91186 -10.78236 -10.25980 -10.15014 -9.96506 -9.67544 -9.61483 -9.44476 -9.27530 -9.00807 -8.87501 -8.69134 -7.28864 -5.79118 -3.15206 0.64379 1.06544 2.79901 3.19098 3.38783 3.42795 3.47073 3.63835 4.48187 4.52416 4.58094 4.58403 4.59166 4.64176 4.75942 4.81919 4.99577 5.03256 5.15849 5.19375 5.34230 5.40241 5.52773 5.55700 5.57965 5.64831 5.70180 5.72917 5.81055 5.88127 5.93299 5.97527 5.98819 6.08024 6.11418 6.15376 6.22247 6.30862 6.41155 6.51924 6.56611 6.61817 6.64000 6.70953 6.93203 7.57370 7.97871 8.26136 8.40406 9.18160 9.90647 10.09567 11.38821 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.003539 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.149193 B = 7910.728508 C = 8718.575598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.023 4.023 3 C -0.133 4.133 4 C -0.094 4.094 5 C -0.137 4.137 6 C -0.083 4.083 7 C -0.137 4.137 8 C 0.553 3.447 9 O -0.530 6.530 10 N -0.710 5.710 11 C 0.150 3.850 12 H 0.113 0.887 13 C -0.181 4.181 14 C 0.192 3.808 15 H 0.076 0.924 16 N -0.726 5.726 17 C -0.246 4.246 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.880 3.120 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.276 1.276 25 C -0.131 4.131 26 C -0.108 4.108 27 C -0.141 4.141 28 C -0.119 4.119 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.395 0.605 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.363 0.637 40 H 0.260 0.740 41 H 0.089 0.911 42 H 0.058 0.942 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.840 22.148 4.318 27.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 C -0.151 4.151 4 C -0.112 4.112 5 C -0.155 4.155 6 C -0.102 4.102 7 C -0.140 4.140 8 C 0.340 3.660 9 O -0.408 6.408 10 N -0.361 5.361 11 C 0.046 3.954 12 H 0.131 0.869 13 C -0.223 4.223 14 C 0.079 3.921 15 H 0.094 0.906 16 N -0.365 5.365 17 C -0.376 4.376 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.710 3.290 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.202 1.202 25 C -0.133 4.133 26 C -0.146 4.146 27 C -0.178 4.178 28 C -0.156 4.156 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.232 0.768 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.197 0.803 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.899 21.872 4.245 26.260 hybrid contribution -0.227 0.508 0.972 1.119 sum 13.672 22.380 5.216 26.739 Atomic orbital electron populations 1.21111 0.89923 1.03099 1.03804 1.20111 0.97026 0.91493 0.93726 1.21085 0.94285 0.97530 1.02209 1.21335 0.94273 0.98271 0.97306 1.21067 1.00130 0.92197 1.02061 1.21301 0.92981 0.98560 0.97316 1.19912 0.93617 0.93513 1.06937 1.18302 0.87264 0.83769 0.76636 1.90739 1.13631 1.87026 1.49417 1.46025 1.10612 1.05838 1.73657 1.22369 0.95684 0.79014 0.98297 0.86898 1.24331 1.02372 0.99764 0.95815 1.20724 0.88751 0.90609 0.91976 0.90621 1.42437 1.25012 1.32434 1.36612 1.19075 1.05821 1.01808 1.10897 0.89009 1.24649 0.97921 0.97375 0.98829 1.69696 1.24451 1.21450 1.42265 0.86615 0.80641 0.78230 0.83508 1.20901 1.21662 1.20173 1.23524 0.95633 0.97190 0.96975 1.22506 0.94268 1.01603 0.96179 1.22858 0.98329 1.00403 0.96218 1.22603 0.96799 1.00807 0.95415 0.90635 0.92528 0.88363 0.85455 0.85688 0.85511 0.85752 0.76805 0.90835 0.90609 0.80343 0.92984 0.89268 0.92319 0.90848 0.91743 0.91980 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.43 8.74 36.00 0.31 -1.11 16 2 C -0.02 -0.26 5.91 -104.23 -0.62 -0.87 16 3 C -0.13 -1.19 9.66 -39.64 -0.38 -1.57 16 4 C -0.09 -0.71 10.04 -39.49 -0.40 -1.11 16 5 C -0.14 -1.06 10.03 -39.64 -0.40 -1.45 16 6 C -0.08 -0.76 9.52 -39.18 -0.37 -1.13 16 7 C -0.14 -1.62 5.87 -104.97 -0.62 -2.24 16 8 C 0.55 7.96 7.70 -12.33 -0.09 7.86 16 9 O -0.53 -9.38 12.94 5.32 0.07 -9.32 16 10 N -0.71 -9.15 5.23 -54.16 -0.28 -9.43 16 11 C 0.15 2.35 4.05 -67.33 -0.27 2.08 16 12 H 0.11 2.09 7.46 -51.93 -0.39 1.71 16 13 C -0.18 -3.04 7.71 -25.58 -0.20 -3.24 16 14 C 0.19 3.55 4.35 -67.48 -0.29 3.26 16 15 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 16 N -0.73 -16.82 4.91 -52.99 -0.26 -17.08 16 17 C -0.25 -6.84 10.46 -15.06 -0.16 -7.00 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.24 5.50 -17.43 -0.10 0.15 16 20 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 21 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 22 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 24 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 25 C -0.13 -1.93 0.91 -154.70 -0.14 -2.07 16 26 C -0.11 -1.23 7.47 -26.28 -0.20 -1.42 16 27 C -0.14 -1.61 8.08 -25.75 -0.21 -1.82 16 28 C -0.12 -1.75 7.46 -26.28 -0.20 -1.95 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.52 8.04 -51.92 -0.42 0.10 16 31 H 0.10 1.38 5.85 -51.93 -0.30 1.08 16 32 H 0.13 0.87 8.06 -52.48 -0.42 0.44 16 33 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 34 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.88 6.46 -52.48 -0.34 0.55 16 36 H 0.40 4.02 4.80 -40.82 -0.20 3.82 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.36 8.47 5.64 -40.82 -0.23 8.24 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.55 6.42 -51.93 -0.33 0.21 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 367.44 15.07 5.54 5.54 Total: -1.00 -32.45 367.44 -10.07 -42.52 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: -6.87 Total: 12.19 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -4.32 Total: -13.65 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.23 Total: -54.88 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.45 -10.07 -42.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078542017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.887 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds