Wall clock time and date at job start Fri Apr 10 2020 23:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37983 * 120.07359 * 2 1 4 4 C 1.38339 * 120.14325 * 179.97438 * 3 2 1 5 5 C 1.38383 * 120.29550 * 0.02562 * 4 3 2 6 6 C 1.37944 * 120.13869 * 359.74802 * 5 4 3 7 7 C 1.39556 * 120.07295 * 180.02562 * 2 1 3 8 8 C 1.47845 * 120.14472 * 359.96336 * 7 2 1 9 9 O 1.21549 * 119.99882 * 353.98036 * 8 7 2 10 10 N 1.34777 * 120.00038 * 173.99050 * 8 7 2 11 11 C 1.46494 * 119.99897 * 179.97438 * 10 8 7 12 12 H 1.08999 * 112.88734 * 336.34635 * 11 10 8 13 13 C 1.54252 * 113.75170 * 107.77119 * 11 10 8 14 14 C 1.53954 * 87.19242 * 139.21354 * 13 11 10 15 15 H 1.08994 * 113.66254 * 220.75832 * 14 13 11 16 16 N 1.46493 * 113.65835 * 89.78702 * 14 13 11 17 17 C 1.36936 * 119.99814 * 105.74364 * 16 14 13 18 18 H 1.07999 * 119.99974 * 0.27101 * 17 16 14 19 19 C 1.38817 * 120.00326 * 180.27215 * 17 16 14 20 20 N 1.31613 * 119.99987 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99796 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47230 * 89.99777 * 21 19 17 23 23 H 1.48506 * 109.47129 * 209.99861 * 21 19 17 24 24 H 1.48500 * 109.47206 * 329.99749 * 21 19 17 25 25 C 1.52906 * 113.66518 * 204.99490 * 11 10 8 26 26 C 1.52916 * 121.13405 * 346.26408 * 25 11 10 27 27 C 1.53945 * 86.78415 * 100.81278 * 26 25 11 28 28 C 1.52914 * 121.13459 * 94.81631 * 25 11 10 29 29 H 1.08998 * 109.47397 * 263.43829 * 1 2 3 30 30 H 1.09007 * 109.46911 * 23.43403 * 1 2 3 31 31 H 1.08999 * 109.47129 * 143.43543 * 1 2 3 32 32 H 1.08004 * 119.92867 * 0.02562 * 3 2 1 33 33 H 1.08004 * 119.85339 * 180.02562 * 4 3 2 34 34 H 1.07997 * 119.93055 * 180.02562 * 5 4 3 35 35 H 1.08006 * 120.06511 * 180.27344 * 6 5 4 36 36 H 0.96998 * 119.99461 * 359.97438 * 10 8 7 37 37 H 1.09005 * 113.57579 * 24.66269 * 13 11 10 38 38 H 1.08998 * 113.67156 * 253.78202 * 13 11 10 39 39 H 0.97003 * 120.00564 * 286.01785 * 16 14 13 40 40 H 0.97006 * 119.99627 * 179.97438 * 20 19 17 41 41 H 1.09002 * 113.65873 * 215.29276 * 26 25 11 42 42 H 1.08994 * 113.65834 * 346.33837 * 26 25 11 43 43 H 1.08997 * 113.58256 * 270.12418 * 27 26 25 44 44 H 1.09000 * 113.64680 * 139.34490 * 27 26 25 45 45 H 1.08999 * 113.66106 * 13.65717 * 28 25 11 46 46 H 1.09003 * 113.66454 * 144.71176 * 28 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1941 0.0000 4 6 3.5818 1.1958 0.0005 5 6 4.2814 0.0018 0.0005 6 6 3.6022 -1.1989 0.0053 7 6 2.2063 -1.2077 -0.0005 8 6 1.4719 -2.4909 -0.0003 9 8 0.2616 -2.4984 0.1108 10 7 2.1446 -3.6523 -0.1230 11 6 1.4170 -4.9238 -0.1222 12 1 0.4496 -4.8583 0.3757 13 6 1.3569 -5.6061 -1.5043 14 6 1.6017 -6.9385 -0.7730 15 1 2.2908 -7.6032 -1.2938 16 7 0.3713 -7.6114 -0.3496 17 6 -0.0693 -8.7197 -1.0225 18 1 0.4926 -9.1002 -1.8626 19 6 -1.2383 -9.3541 -0.6249 20 7 -1.6619 -10.4190 -1.2720 21 14 -2.2107 -8.6955 0.8277 22 1 -3.2061 -7.7034 0.3481 23 1 -2.9141 -9.8164 1.5016 24 1 -1.2849 -8.0432 1.7883 25 6 2.2620 -6.1142 0.3327 26 6 3.7838 -6.0089 0.4390 27 6 3.5791 -5.8346 1.9548 28 6 2.2456 -6.5855 1.7873 29 1 -0.3634 -0.1174 1.0209 30 1 -0.3633 0.9430 -0.4087 31 1 -0.3633 -0.8254 -0.6122 32 1 1.6584 2.1294 0.0004 33 1 4.1183 2.1331 0.0010 34 1 5.3613 0.0100 0.0014 35 1 4.1494 -2.1300 0.0097 36 1 3.1105 -3.6462 -0.2119 37 1 2.1713 -5.3174 -2.1688 38 1 0.3787 -5.5437 -1.9810 39 1 -0.1335 -7.2697 0.4049 40 1 -2.4786 -10.8625 -0.9939 41 1 4.3056 -6.9275 0.1707 42 1 4.1965 -5.1271 -0.0510 43 1 3.4590 -4.7957 2.2620 44 1 4.3094 -6.3725 2.5593 45 1 1.4296 -6.1642 2.3745 46 1 2.3350 -7.6662 1.8981 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078542017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:47 Heat of formation + Delta-G solvation = 30.518860 kcal Electronic energy + Delta-G solvation = -26366.429391 eV Core-core repulsion = 22835.863209 eV Total energy + Delta-G solvation = -3530.566182 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12140 -40.91242 -39.06380 -36.69606 -35.73537 -34.36743 -33.45956 -32.55261 -31.56110 -28.08087 -26.80228 -26.45194 -25.48309 -24.88905 -23.89790 -22.38540 -21.55105 -21.50115 -20.10172 -19.36439 -18.23445 -17.49109 -16.78048 -16.70691 -16.50596 -16.31984 -16.04467 -15.89591 -15.64602 -14.90539 -14.67505 -14.59771 -14.31863 -14.03423 -14.00828 -13.77451 -13.42548 -13.18094 -13.12501 -13.04139 -12.97291 -12.84562 -12.65469 -12.47368 -12.30389 -12.00081 -11.89965 -11.86988 -11.41889 -11.24632 -11.02386 -10.73218 -10.62149 -10.09935 -9.85059 -9.63128 -9.30090 -8.06169 -5.38321 -0.10939 0.41337 1.32605 1.35867 1.41210 1.86431 2.12138 2.43369 2.87298 3.24264 3.26846 3.37786 3.66840 3.73016 3.85567 3.87964 3.90730 3.94261 4.03996 4.14741 4.17373 4.41728 4.47929 4.53346 4.57708 4.71132 4.73155 4.77432 4.81379 4.85768 4.92919 4.97339 5.00932 5.04174 5.10048 5.17200 5.21214 5.25037 5.37004 5.40036 5.51697 5.54906 5.61095 5.66896 5.76338 5.98469 6.19584 6.55135 7.04021 7.21885 7.81498 7.98547 9.15251 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018463 B = 0.003539 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.149193 B = 7910.728508 C = 8718.575598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.047 4.047 3 C -0.137 4.137 4 C -0.086 4.086 5 C -0.133 4.133 6 C -0.082 4.082 7 C -0.161 4.161 8 C 0.547 3.453 9 O -0.575 6.575 10 N -0.695 5.695 11 C 0.160 3.840 12 H 0.078 0.922 13 C -0.173 4.173 14 C 0.171 3.829 15 H 0.073 0.927 16 N -0.732 5.732 17 C -0.226 4.226 18 H 0.065 0.935 19 C -0.058 4.058 20 N -0.980 5.980 21 Si 0.942 3.058 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.255 1.255 25 C -0.119 4.119 26 C -0.095 4.095 27 C -0.122 4.122 28 C -0.133 4.133 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.146 0.854 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.147 0.853 36 H 0.412 0.588 37 H 0.103 0.897 38 H 0.042 0.958 39 H 0.363 0.637 40 H 0.258 0.742 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.743 25.360 5.457 32.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.048 4.048 3 C -0.155 4.155 4 C -0.104 4.104 5 C -0.150 4.150 6 C -0.101 4.101 7 C -0.164 4.164 8 C 0.337 3.663 9 O -0.456 6.456 10 N -0.347 5.347 11 C 0.055 3.945 12 H 0.097 0.903 13 C -0.214 4.214 14 C 0.060 3.940 15 H 0.091 0.909 16 N -0.372 5.372 17 C -0.357 4.357 18 H 0.083 0.917 19 C -0.249 4.249 20 N -0.631 5.631 21 Si 0.771 3.229 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.180 1.180 25 C -0.121 4.121 26 C -0.133 4.133 27 C -0.160 4.160 28 C -0.171 4.171 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.175 0.825 34 H 0.177 0.823 35 H 0.164 0.836 36 H 0.252 0.748 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.196 0.804 40 H 0.067 0.933 41 H 0.115 0.885 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.066 0.934 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 17.889 25.136 5.391 31.319 hybrid contribution -1.345 -0.400 0.526 1.499 sum 16.544 24.736 5.917 30.341 Atomic orbital electron populations 1.20976 0.91129 1.02805 1.02542 1.20227 0.96606 0.92614 0.95330 1.21334 0.95275 0.97193 1.01688 1.21784 0.93730 0.99838 0.95078 1.21499 1.01791 0.91442 1.00307 1.21566 0.91636 1.00422 0.96465 1.19815 0.94902 0.91978 1.09742 1.18859 0.86952 0.84922 0.75583 1.90729 1.15741 1.87700 1.51410 1.45760 1.11193 1.04453 1.73265 1.21896 0.95014 0.80728 0.96909 0.90347 1.24224 1.01644 0.98824 0.96742 1.21022 0.87364 0.91091 0.94492 0.90868 1.42417 1.26752 1.31657 1.36338 1.19070 1.04863 1.02182 1.09554 0.91745 1.25352 0.99454 0.98123 1.02000 1.69850 1.25275 1.23425 1.44516 0.85594 0.79239 0.77377 0.80739 1.21314 1.21756 1.18012 1.23416 0.98201 0.94787 0.95741 1.22554 0.90855 1.03474 0.96374 1.22779 0.96076 1.00580 0.96541 1.22678 0.98866 1.00456 0.95118 0.91857 0.90491 0.91530 0.83628 0.82483 0.82252 0.83572 0.74795 0.87907 0.93892 0.80442 0.93315 0.88464 0.89203 0.89795 0.89856 0.93402 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.83 8.74 71.24 0.62 -2.21 16 2 C -0.05 -1.01 5.91 -19.61 -0.12 -1.13 16 3 C -0.14 -2.05 9.66 22.23 0.21 -1.84 16 4 C -0.09 -0.92 10.04 22.33 0.22 -0.70 16 5 C -0.13 -1.40 10.03 22.23 0.22 -1.17 16 6 C -0.08 -1.20 9.52 22.53 0.21 -0.99 16 7 C -0.16 -3.60 5.87 -20.09 -0.12 -3.71 16 8 C 0.55 15.67 7.70 86.79 0.67 16.34 16 9 O -0.57 -21.40 12.94 -3.87 -0.05 -21.45 16 10 N -0.69 -16.82 5.23 -443.55 -2.32 -19.14 16 11 C 0.16 4.96 4.05 45.39 0.18 5.14 16 12 H 0.08 3.04 7.46 -2.39 -0.02 3.02 16 13 C -0.17 -5.83 7.71 31.34 0.24 -5.58 16 14 C 0.17 6.34 4.35 45.28 0.20 6.54 16 15 H 0.07 2.74 8.11 -2.39 -0.02 2.72 16 16 N -0.73 -34.77 4.91 -321.57 -1.58 -36.34 16 17 C -0.23 -12.98 10.46 84.03 0.88 -12.11 16 18 H 0.06 4.00 8.06 -2.91 -0.02 3.97 16 19 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 20 N -0.98 -63.72 13.97 21.65 0.30 -63.42 16 21 Si 0.94 47.59 27.74 68.60 1.90 49.49 16 22 H -0.29 -14.54 7.11 99.48 0.71 -13.83 16 23 H -0.29 -14.66 7.11 99.48 0.71 -13.95 16 24 H -0.26 -11.85 6.52 99.48 0.65 -11.20 16 25 C -0.12 -3.36 0.91 -52.31 -0.05 -3.41 16 26 C -0.09 -1.79 7.47 30.89 0.23 -1.56 16 27 C -0.12 -2.35 8.08 31.23 0.25 -2.10 16 28 C -0.13 -3.78 7.46 30.89 0.23 -3.55 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.41 8.04 -2.38 -0.02 1.40 16 31 H 0.07 2.02 5.85 -2.39 -0.01 2.01 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 33 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 34 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 35 H 0.15 1.35 6.46 -2.91 -0.02 1.34 16 36 H 0.41 6.90 4.80 -92.71 -0.44 6.45 16 37 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 38 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.36 17.24 5.64 -92.71 -0.52 16.71 16 40 H 0.26 16.02 8.31 -92.70 -0.77 15.25 16 41 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.09 1.17 6.42 -2.39 -0.02 1.16 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -76.36 367.44 2.79 -73.56 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -0.03 Total: 32.35 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.57 Total: -15.05 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -3.60 Total: -118.90 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.05 Total: -21.45 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.90 Total: 49.49 kcal Total: -76.36 2.79 -73.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078542017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.082 kcal (2) G-P(sol) polarization free energy of solvation -76.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds