Wall clock time and date at job start Fri Apr 10 2020 23:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37985 * 120.07479 * 2 1 4 4 C 1.38332 * 120.14410 * 180.24933 * 3 2 1 5 5 C 1.38387 * 120.29376 * 359.74608 * 4 3 2 6 6 C 1.37934 * 120.14195 * 359.97386 * 5 4 3 7 7 C 1.39549 * 120.07310 * 179.71660 * 2 1 3 8 8 C 1.47846 * 120.14483 * 0.02870 * 7 2 1 9 9 O 1.21547 * 120.00106 * 353.47302 * 8 7 2 10 10 N 1.34779 * 120.00097 * 173.47598 * 8 7 2 11 11 C 1.46499 * 119.99994 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.94828 * 26.89981 * 11 10 8 13 13 C 1.53951 * 113.65816 * 255.49262 * 11 10 8 14 14 C 1.53958 * 87.37972 * 220.83490 * 13 11 10 15 15 H 1.08990 * 113.66334 * 139.16887 * 14 13 11 16 16 N 1.46503 * 113.66048 * 270.13369 * 14 13 11 17 17 C 1.36939 * 119.99628 * 255.48999 * 16 14 13 18 18 H 1.07996 * 120.00154 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99987 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99677 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00306 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47356 * 60.00076 * 21 19 17 23 23 H 1.48499 * 109.47377 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46992 * 300.00235 * 21 19 17 25 25 C 1.52909 * 86.78039 * 24.69559 * 14 13 11 26 26 C 1.52912 * 121.13436 * 209.38281 * 25 14 13 27 27 C 1.53949 * 86.77987 * 209.38187 * 26 25 14 28 28 C 1.52905 * 121.13676 * 100.82098 * 25 14 13 29 29 H 1.09000 * 109.47198 * 263.68905 * 1 2 3 30 30 H 1.09006 * 109.46848 * 23.68443 * 1 2 3 31 31 H 1.08996 * 109.46964 * 143.68562 * 1 2 3 32 32 H 1.07999 * 119.92671 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.85697 * 179.72051 * 4 3 2 34 34 H 1.08001 * 119.92774 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.07153 * 180.02562 * 6 5 4 36 36 H 0.97005 * 119.99880 * 359.97438 * 10 8 7 37 37 H 1.09006 * 113.58127 * 106.19720 * 13 11 10 38 38 H 1.08994 * 113.58308 * 335.47423 * 13 11 10 39 39 H 0.96998 * 120.00289 * 75.49115 * 16 14 13 40 40 H 0.97001 * 119.99952 * 179.97438 * 20 19 17 41 41 H 1.08998 * 113.65959 * 323.85746 * 26 25 14 42 42 H 1.09002 * 113.66033 * 94.91367 * 26 25 14 43 43 H 1.08998 * 113.58196 * 270.13013 * 27 26 25 44 44 H 1.09006 * 113.64676 * 139.34861 * 27 26 25 45 45 H 1.08997 * 113.66622 * 265.09155 * 28 25 14 46 46 H 1.08998 * 113.66208 * 36.14842 * 28 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0052 5 6 4.2813 0.0017 -0.0051 6 6 3.6022 -1.1989 0.0007 7 6 2.2063 -1.2076 0.0060 8 6 1.4720 -2.4908 0.0117 9 8 0.2624 -2.4983 0.1308 10 7 2.1438 -3.6523 -0.1152 11 6 1.4160 -4.9238 -0.1101 12 1 0.3886 -4.8268 -0.4608 13 6 1.5473 -5.7054 1.2097 14 6 1.6817 -6.9813 0.3586 15 1 2.4349 -7.6767 0.7287 16 7 0.4014 -7.6307 0.0663 17 6 0.0451 -8.7727 0.7327 18 1 0.7077 -9.1944 1.4740 19 6 -1.1683 -9.3877 0.4562 20 7 -1.9760 -8.8735 -0.4468 21 14 -1.6547 -10.9451 1.3657 22 1 -1.7168 -10.6683 2.8234 23 1 -2.9859 -11.4005 0.8907 24 1 -0.6476 -12.0051 1.1057 25 6 2.1831 -6.0747 -0.7660 26 6 1.9603 -6.4392 -2.2342 27 6 3.2599 -5.6698 -2.5324 28 6 3.6752 -5.9524 -1.0771 29 1 -0.3633 -0.1130 1.0214 30 1 -0.3633 0.9412 -0.4128 31 1 -0.3633 -0.8280 -0.6086 32 1 1.6585 2.1294 -0.0004 33 1 4.1183 2.1331 -0.0098 34 1 5.3613 0.0099 -0.0096 35 1 4.1493 -2.1300 0.0011 36 1 3.1091 -3.6463 -0.2106 37 1 0.6455 -5.6825 1.8216 38 1 2.4473 -5.4608 1.7737 39 1 -0.1939 -7.2517 -0.5992 40 1 -2.8237 -9.3034 -0.6403 41 1 2.0290 -7.5083 -2.4347 42 1 1.0715 -5.9814 -2.6685 43 1 3.1020 -4.6121 -2.7431 44 1 3.8972 -6.1573 -3.2702 45 1 4.1563 -5.1059 -0.5872 46 1 4.2259 -6.8847 -0.9526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078542018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:50 Heat of formation + Delta-G solvation = 46.593393 kcal Electronic energy + Delta-G solvation = -26252.216725 eV Core-core repulsion = 22722.347586 eV Total energy + Delta-G solvation = -3529.869138 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81954 -39.85168 -38.03083 -35.09083 -34.26348 -32.80735 -32.45500 -31.16749 -29.49942 -27.17062 -25.57238 -24.85249 -24.19991 -23.63828 -22.70097 -21.48492 -20.38879 -20.12457 -18.44636 -17.37825 -16.99458 -16.15908 -15.86257 -15.40925 -15.26140 -15.11591 -14.87294 -14.55942 -14.10556 -13.72828 -13.41049 -13.29998 -13.04311 -12.70831 -12.43680 -12.19526 -12.18475 -12.11566 -11.91316 -11.86345 -11.66531 -11.47841 -11.29066 -10.92866 -10.81820 -10.65034 -10.23701 -10.07318 -9.86796 -9.66900 -9.57077 -9.32203 -9.21302 -8.94032 -8.82357 -8.57672 -6.96632 -5.77165 -3.06625 0.71177 1.12350 2.88577 3.29660 3.44445 3.48947 3.50002 3.71225 4.53241 4.55178 4.60089 4.65073 4.71248 4.82150 4.86678 4.92687 5.08957 5.14576 5.22819 5.31361 5.45756 5.47022 5.62036 5.64334 5.70649 5.75490 5.80156 5.90496 5.99861 6.01963 6.03938 6.05114 6.08965 6.15930 6.18152 6.24938 6.37788 6.46183 6.50014 6.64662 6.68945 6.71840 6.76816 6.86047 7.09570 7.67983 7.71179 8.37031 8.41210 9.52133 10.09038 10.43587 11.44878 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.003208 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.815286 B = 8724.751833 C = 9489.363725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.023 4.023 3 C -0.133 4.133 4 C -0.095 4.095 5 C -0.137 4.137 6 C -0.083 4.083 7 C -0.136 4.136 8 C 0.551 3.449 9 O -0.528 6.528 10 N -0.711 5.711 11 C 0.154 3.846 12 H 0.115 0.885 13 C -0.183 4.183 14 C 0.186 3.814 15 H 0.066 0.934 16 N -0.701 5.701 17 C -0.244 4.244 18 H 0.071 0.929 19 C -0.010 4.010 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.127 4.127 26 C -0.114 4.114 27 C -0.142 4.142 28 C -0.110 4.110 29 H 0.076 0.924 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.394 0.606 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.387 0.613 40 H 0.257 0.743 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.057 0.943 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.891 18.555 -1.784 23.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 C -0.151 4.151 4 C -0.113 4.113 5 C -0.155 4.155 6 C -0.102 4.102 7 C -0.139 4.139 8 C 0.339 3.661 9 O -0.406 6.406 10 N -0.362 5.362 11 C 0.050 3.950 12 H 0.133 0.867 13 C -0.225 4.225 14 C 0.073 3.927 15 H 0.084 0.916 16 N -0.339 5.339 17 C -0.375 4.375 18 H 0.089 0.911 19 C -0.207 4.207 20 N -0.577 5.577 21 Si 0.739 3.261 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.129 4.129 26 C -0.151 4.151 27 C -0.179 4.179 28 C -0.148 4.148 29 H 0.094 0.906 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.142 0.858 36 H 0.230 0.770 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.221 0.779 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 13.942 18.330 -1.613 23.086 hybrid contribution 0.085 -0.589 0.312 0.672 sum 14.028 17.742 -1.300 22.655 Atomic orbital electron populations 1.21107 0.89900 1.03026 1.03873 1.20114 0.97044 0.91485 0.93739 1.21077 0.94273 0.97520 1.02249 1.21322 0.94275 0.98231 0.97457 1.21058 1.00087 0.92212 1.02133 1.21300 0.93018 0.98536 0.97354 1.19944 0.93615 0.93604 1.06708 1.18289 0.87263 0.83705 0.76862 1.90750 1.13659 1.87042 1.49114 1.46062 1.10598 1.05969 1.73589 1.22311 0.96404 0.78802 0.97443 0.86710 1.24312 1.01555 0.99871 0.96781 1.20779 0.89736 0.90612 0.91568 0.91599 1.42079 1.16456 1.28432 1.46919 1.19204 1.01296 1.00793 1.16190 0.91086 1.24757 0.97144 0.99403 0.99361 1.69658 1.11431 1.41285 1.35360 0.86259 0.77467 0.83148 0.79233 1.21229 1.21703 1.21258 1.23498 0.95680 0.97453 0.96271 1.22552 0.96886 1.00738 0.94968 1.22877 0.98493 1.00257 0.96317 1.22521 0.94722 1.01313 0.96234 0.90551 0.92575 0.88407 0.85486 0.85739 0.85565 0.85777 0.76964 0.90856 0.91367 0.77903 0.93363 0.89367 0.91713 0.90901 0.91900 0.92487 0.89502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.50 8.73 36.01 0.31 -1.18 16 2 C -0.02 -0.27 5.91 -104.22 -0.62 -0.89 16 3 C -0.13 -1.25 9.66 -39.64 -0.38 -1.63 16 4 C -0.09 -0.76 10.04 -39.49 -0.40 -1.16 16 5 C -0.14 -1.13 10.03 -39.64 -0.40 -1.52 16 6 C -0.08 -0.82 9.53 -39.19 -0.37 -1.19 16 7 C -0.14 -1.70 5.87 -104.97 -0.62 -2.32 16 8 C 0.55 8.42 7.70 -12.33 -0.09 8.32 16 9 O -0.53 -9.88 13.00 5.32 0.07 -9.81 16 10 N -0.71 -9.82 5.26 -54.23 -0.29 -10.10 16 11 C 0.15 2.58 4.02 -67.40 -0.27 2.31 16 12 H 0.12 2.31 7.54 -51.93 -0.39 1.92 16 13 C -0.18 -3.28 7.68 -25.74 -0.20 -3.48 16 14 C 0.19 3.62 4.35 -67.48 -0.29 3.33 16 15 H 0.07 1.28 8.12 -51.93 -0.42 0.85 16 16 N -0.70 -17.28 5.13 -52.99 -0.27 -17.55 16 17 C -0.24 -6.69 9.98 -15.06 -0.15 -6.84 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 21 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 25 C -0.13 -1.99 0.92 -154.63 -0.14 -2.13 16 26 C -0.11 -1.80 7.44 -26.28 -0.20 -2.00 16 27 C -0.14 -1.75 8.08 -25.75 -0.21 -1.95 16 28 C -0.11 -1.34 7.45 -26.28 -0.20 -1.54 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.06 0.54 8.04 -51.93 -0.42 0.12 16 31 H 0.10 1.43 5.86 -51.93 -0.30 1.13 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.12 0.97 6.46 -52.49 -0.34 0.63 16 36 H 0.39 4.35 4.74 -40.82 -0.19 4.16 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.39 10.24 7.75 -40.82 -0.32 9.92 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 0.58 6.42 -51.93 -0.33 0.25 16 46 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 370.57 15.07 5.58 5.58 Total: -1.00 -31.52 370.57 -10.43 -41.95 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -6.91 Total: 14.17 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -4.31 Total: -14.27 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: 0.17 Total: -54.97 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: 0.07 Total: -9.81 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.52 -10.43 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078542018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.545 kcal (2) G-P(sol) polarization free energy of solvation -31.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds