Wall clock time and date at job start Fri Apr 10 2020 23:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37985 * 120.07479 * 2 1 4 4 C 1.38332 * 120.14410 * 180.24933 * 3 2 1 5 5 C 1.38387 * 120.29376 * 359.74608 * 4 3 2 6 6 C 1.37934 * 120.14195 * 359.97386 * 5 4 3 7 7 C 1.39549 * 120.07310 * 179.71660 * 2 1 3 8 8 C 1.47846 * 120.14483 * 0.02870 * 7 2 1 9 9 O 1.21547 * 120.00106 * 353.47302 * 8 7 2 10 10 N 1.34779 * 120.00097 * 173.47598 * 8 7 2 11 11 C 1.46499 * 119.99994 * 180.02562 * 10 8 7 12 12 H 1.08996 * 112.94828 * 26.89981 * 11 10 8 13 13 C 1.53951 * 113.65816 * 255.49262 * 11 10 8 14 14 C 1.53958 * 87.37972 * 220.83490 * 13 11 10 15 15 H 1.08990 * 113.66334 * 139.16887 * 14 13 11 16 16 N 1.46503 * 113.66048 * 270.13369 * 14 13 11 17 17 C 1.36939 * 119.99628 * 255.48999 * 16 14 13 18 18 H 1.07996 * 120.00154 * 0.02562 * 17 16 14 19 19 C 1.38813 * 119.99987 * 179.97438 * 17 16 14 20 20 N 1.31624 * 119.99677 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00306 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47356 * 60.00076 * 21 19 17 23 23 H 1.48499 * 109.47377 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46992 * 300.00235 * 21 19 17 25 25 C 1.52909 * 86.78039 * 24.69559 * 14 13 11 26 26 C 1.52912 * 121.13436 * 209.38281 * 25 14 13 27 27 C 1.53949 * 86.77987 * 209.38187 * 26 25 14 28 28 C 1.52905 * 121.13676 * 100.82098 * 25 14 13 29 29 H 1.09000 * 109.47198 * 263.68905 * 1 2 3 30 30 H 1.09006 * 109.46848 * 23.68443 * 1 2 3 31 31 H 1.08996 * 109.46964 * 143.68562 * 1 2 3 32 32 H 1.07999 * 119.92671 * 359.97438 * 3 2 1 33 33 H 1.08004 * 119.85697 * 179.72051 * 4 3 2 34 34 H 1.08001 * 119.92774 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.07153 * 180.02562 * 6 5 4 36 36 H 0.97005 * 119.99880 * 359.97438 * 10 8 7 37 37 H 1.09006 * 113.58127 * 106.19720 * 13 11 10 38 38 H 1.08994 * 113.58308 * 335.47423 * 13 11 10 39 39 H 0.96998 * 120.00289 * 75.49115 * 16 14 13 40 40 H 0.97001 * 119.99952 * 179.97438 * 20 19 17 41 41 H 1.08998 * 113.65959 * 323.85746 * 26 25 14 42 42 H 1.09002 * 113.66033 * 94.91367 * 26 25 14 43 43 H 1.08998 * 113.58196 * 270.13013 * 27 26 25 44 44 H 1.09006 * 113.64676 * 139.34861 * 27 26 25 45 45 H 1.08997 * 113.66622 * 265.09155 * 28 25 14 46 46 H 1.08998 * 113.66208 * 36.14842 * 28 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1941 0.0000 4 6 3.5818 1.1958 -0.0052 5 6 4.2813 0.0017 -0.0051 6 6 3.6022 -1.1989 0.0007 7 6 2.2063 -1.2076 0.0060 8 6 1.4720 -2.4908 0.0117 9 8 0.2624 -2.4983 0.1308 10 7 2.1438 -3.6523 -0.1152 11 6 1.4160 -4.9238 -0.1101 12 1 0.3886 -4.8268 -0.4608 13 6 1.5473 -5.7054 1.2097 14 6 1.6817 -6.9813 0.3586 15 1 2.4349 -7.6767 0.7287 16 7 0.4014 -7.6307 0.0663 17 6 0.0451 -8.7727 0.7327 18 1 0.7077 -9.1944 1.4740 19 6 -1.1683 -9.3877 0.4562 20 7 -1.9760 -8.8735 -0.4468 21 14 -1.6547 -10.9451 1.3657 22 1 -1.7168 -10.6683 2.8234 23 1 -2.9859 -11.4005 0.8907 24 1 -0.6476 -12.0051 1.1057 25 6 2.1831 -6.0747 -0.7660 26 6 1.9603 -6.4392 -2.2342 27 6 3.2599 -5.6698 -2.5324 28 6 3.6752 -5.9524 -1.0771 29 1 -0.3633 -0.1130 1.0214 30 1 -0.3633 0.9412 -0.4128 31 1 -0.3633 -0.8280 -0.6086 32 1 1.6585 2.1294 -0.0004 33 1 4.1183 2.1331 -0.0098 34 1 5.3613 0.0099 -0.0096 35 1 4.1493 -2.1300 0.0011 36 1 3.1091 -3.6463 -0.2106 37 1 0.6455 -5.6825 1.8216 38 1 2.4473 -5.4608 1.7737 39 1 -0.1939 -7.2517 -0.5992 40 1 -2.8237 -9.3034 -0.6403 41 1 2.0290 -7.5083 -2.4347 42 1 1.0715 -5.9814 -2.6685 43 1 3.1020 -4.6121 -2.7431 44 1 3.8972 -6.1573 -3.2702 45 1 4.1563 -5.1059 -0.5872 46 1 4.2259 -6.8847 -0.9526 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078542018.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:49 Heat of formation + Delta-G solvation = 27.709697 kcal Electronic energy + Delta-G solvation = -26253.035583 eV Core-core repulsion = 22722.347586 eV Total energy + Delta-G solvation = -3530.687997 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.07530 -40.88707 -39.05104 -36.57731 -35.69813 -34.32595 -33.44543 -32.25272 -31.22105 -28.06259 -26.78755 -26.42239 -25.45520 -25.07007 -23.95225 -22.36251 -21.53075 -21.47516 -19.65038 -19.21325 -18.24674 -17.39812 -16.85589 -16.68716 -16.35866 -16.26999 -16.11093 -15.81475 -15.54056 -15.11823 -14.61433 -14.52239 -14.17877 -14.01971 -13.92455 -13.38864 -13.34278 -13.15964 -13.03509 -12.96835 -12.94504 -12.76803 -12.64824 -12.50258 -12.22661 -12.02612 -11.97890 -11.78893 -11.35192 -11.19287 -10.98912 -10.67908 -10.58844 -10.08646 -9.83873 -9.62112 -8.99885 -7.95220 -5.24386 -0.10104 0.41896 1.45694 1.49282 1.55183 1.87812 2.13815 2.54386 2.88007 3.35602 3.38888 3.48415 3.68166 3.77657 3.86716 3.90347 3.92205 4.03344 4.17972 4.19682 4.23493 4.42326 4.50206 4.55584 4.60808 4.72714 4.74659 4.77976 4.82494 4.87055 4.94937 5.00032 5.01877 5.09305 5.11265 5.21251 5.24145 5.28266 5.38071 5.42013 5.51283 5.52041 5.56757 5.62510 5.72886 5.99255 6.26481 6.56919 7.24087 7.31680 8.08500 8.30780 9.28038 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019814 B = 0.003208 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.815286 B = 8724.751833 C = 9489.363725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.047 4.047 3 C -0.136 4.136 4 C -0.086 4.086 5 C -0.132 4.132 6 C -0.083 4.083 7 C -0.161 4.161 8 C 0.545 3.455 9 O -0.576 6.576 10 N -0.695 5.695 11 C 0.163 3.837 12 H 0.069 0.931 13 C -0.172 4.172 14 C 0.168 3.832 15 H 0.073 0.927 16 N -0.716 5.716 17 C -0.242 4.242 18 H 0.080 0.920 19 C -0.077 4.077 20 N -0.971 5.971 21 Si 0.975 3.025 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.274 1.274 25 C -0.116 4.116 26 C -0.128 4.128 27 C -0.123 4.123 28 C -0.094 4.094 29 H 0.061 0.939 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.146 0.854 36 H 0.412 0.588 37 H 0.035 0.965 38 H 0.101 0.899 39 H 0.372 0.628 40 H 0.250 0.750 41 H 0.072 0.928 42 H 0.040 0.960 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.089 0.911 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.539 20.328 -1.449 28.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.154 4.154 4 C -0.104 4.104 5 C -0.149 4.149 6 C -0.101 4.101 7 C -0.164 4.164 8 C 0.335 3.665 9 O -0.457 6.457 10 N -0.347 5.347 11 C 0.058 3.942 12 H 0.087 0.913 13 C -0.214 4.214 14 C 0.057 3.943 15 H 0.091 0.909 16 N -0.353 5.353 17 C -0.374 4.374 18 H 0.098 0.902 19 C -0.269 4.269 20 N -0.621 5.621 21 Si 0.804 3.196 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.199 1.199 25 C -0.118 4.118 26 C -0.166 4.166 27 C -0.160 4.160 28 C -0.131 4.131 29 H 0.080 0.920 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.165 0.835 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.164 0.836 36 H 0.252 0.748 37 H 0.054 0.946 38 H 0.120 0.880 39 H 0.203 0.797 40 H 0.059 0.941 41 H 0.090 0.910 42 H 0.059 0.941 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.689 20.122 -1.259 27.491 hybrid contribution -1.303 -1.016 0.223 1.667 sum 17.386 19.107 -1.036 25.854 Atomic orbital electron populations 1.20970 0.91217 1.02796 1.02467 1.20224 0.96561 0.92640 0.95390 1.21332 0.95303 0.97120 1.01639 1.21788 0.93682 0.99849 0.95048 1.21500 1.01809 0.91376 1.00257 1.21561 0.91571 1.00474 0.96542 1.19823 0.94959 0.91907 1.09746 1.18912 0.86938 0.84975 0.75708 1.90741 1.15956 1.87777 1.51250 1.45781 1.11189 1.04517 1.73210 1.21770 0.94995 0.80653 0.96772 0.91315 1.24190 1.01238 0.99234 0.96784 1.21068 0.87855 0.91257 0.94113 0.90890 1.42234 1.18265 1.28271 1.46530 1.19646 1.01134 1.01067 1.15506 0.90215 1.25599 0.97547 1.02917 1.00828 1.69838 1.11738 1.42991 1.37570 0.85192 0.76784 0.79641 0.78021 1.20584 1.22444 1.19939 1.23397 0.98767 0.94837 0.94816 1.22590 0.98445 1.00251 0.95341 1.22793 0.95806 1.00257 0.97169 1.22556 0.91517 1.03302 0.95761 0.92025 0.90310 0.91683 0.83539 0.82341 0.82140 0.83646 0.74840 0.94647 0.88029 0.79653 0.94106 0.90978 0.94080 0.89981 0.89779 0.89213 0.88267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 8.73 71.24 0.62 -2.44 16 2 C -0.05 -1.10 5.91 -19.61 -0.12 -1.22 16 3 C -0.14 -2.19 9.66 22.23 0.21 -1.98 16 4 C -0.09 -0.99 10.04 22.33 0.22 -0.77 16 5 C -0.13 -1.52 10.03 22.23 0.22 -1.30 16 6 C -0.08 -1.34 9.53 22.53 0.21 -1.12 16 7 C -0.16 -3.91 5.87 -20.09 -0.12 -4.03 16 8 C 0.54 17.13 7.70 86.79 0.67 17.80 16 9 O -0.58 -23.46 13.00 -3.86 -0.05 -23.51 16 10 N -0.69 -18.79 5.26 -443.77 -2.33 -21.13 16 11 C 0.16 5.67 4.02 45.34 0.18 5.85 16 12 H 0.07 3.06 7.54 -2.39 -0.02 3.04 16 13 C -0.17 -6.30 7.68 31.23 0.24 -6.06 16 14 C 0.17 6.63 4.35 45.28 0.20 6.83 16 15 H 0.07 2.76 8.12 -2.39 -0.02 2.74 16 16 N -0.72 -37.05 5.13 -321.56 -1.65 -38.70 16 17 C -0.24 -13.65 9.98 84.03 0.84 -12.82 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 20 N -0.97 -61.45 13.06 21.65 0.28 -61.17 16 21 Si 0.97 47.16 29.55 68.60 2.03 49.18 16 22 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 24 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 25 C -0.12 -3.61 0.92 -52.26 -0.05 -3.66 16 26 C -0.13 -4.13 7.44 30.89 0.23 -3.90 16 27 C -0.12 -2.69 8.08 31.23 0.25 -2.43 16 28 C -0.09 -1.95 7.45 30.88 0.23 -1.72 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.56 8.04 -2.38 -0.02 1.54 16 31 H 0.06 2.11 5.86 -2.39 -0.01 2.10 16 32 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 33 H 0.16 0.79 8.06 -2.91 -0.02 0.76 16 34 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 35 H 0.15 1.59 6.46 -2.91 -0.02 1.57 16 36 H 0.41 7.86 4.74 -92.70 -0.44 7.42 16 37 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 38 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 39 H 0.37 21.16 7.75 -92.71 -0.72 20.44 16 40 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.08 1.55 8.14 -2.38 -0.02 1.54 16 45 H 0.09 1.33 6.42 -2.39 -0.02 1.31 16 46 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -75.57 370.57 2.64 -72.93 By element: Atomic # 1 Polarization: 39.57 SS G_CDS: -0.16 Total: 39.41 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 4.52 Total: -17.02 kcal Atomic # 7 Polarization: -117.30 SS G_CDS: -3.70 Total: -120.99 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -75.57 2.64 -72.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078542018.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.641 kcal (2) G-P(sol) polarization free energy of solvation -75.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds