Wall clock time and date at job start Fri Apr 10 2020 23:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38376 * 119.92554 * 2 1 4 4 C 1.38343 * 120.29491 * 179.97438 * 3 2 1 5 5 C 1.37983 * 120.13732 * 359.96089 * 4 3 2 6 6 C 1.39553 * 119.85797 * 0.02562 * 5 4 3 7 7 C 1.47842 * 120.14363 * 179.97438 * 6 5 4 8 8 O 1.21556 * 119.99548 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00328 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00242 * 180.02562 * 9 7 6 11 11 H 1.09003 * 112.88432 * 334.66984 * 10 9 7 12 12 C 1.53946 * 113.66542 * 106.01276 * 10 9 7 13 13 C 1.54243 * 87.18883 * 89.78735 * 12 10 9 14 14 H 1.09004 * 113.75231 * 139.21972 * 13 12 10 15 15 N 1.46506 * 113.66666 * 270.26346 * 13 12 10 16 16 C 1.36937 * 120.00003 * 252.18627 * 15 13 12 17 17 H 1.08003 * 119.99951 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99732 * 179.97438 * 16 15 13 19 19 N 1.31614 * 119.99836 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99678 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47259 * 60.00224 * 20 18 16 22 22 H 1.48502 * 109.46965 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47433 * 299.99773 * 20 18 16 24 24 C 1.52903 * 86.77992 * 24.73345 * 13 12 10 25 25 C 1.52909 * 121.13561 * 100.81894 * 24 13 12 26 26 C 1.53952 * 86.78299 * 100.82343 * 25 24 13 27 27 C 1.52904 * 121.14004 * 209.37998 * 24 13 12 28 28 C 1.37935 * 119.92549 * 179.71781 * 2 1 3 29 29 H 1.09001 * 109.46953 * 89.99999 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99597 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00227 * 1 2 3 32 32 H 1.08003 * 119.85619 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.93064 * 179.97438 * 4 3 2 34 34 H 1.08000 * 120.06913 * 179.97438 * 5 4 3 35 35 H 0.96998 * 119.99540 * 0.02562 * 9 7 6 36 36 H 1.09000 * 113.58253 * 204.34675 * 12 10 9 37 37 H 1.09005 * 113.58052 * 335.13609 * 12 10 9 38 38 H 0.96994 * 119.99772 * 72.17806 * 15 13 12 39 39 H 0.97003 * 119.99554 * 179.97438 * 19 18 16 40 40 H 1.09003 * 113.66611 * 215.29281 * 25 24 13 41 41 H 1.08999 * 113.66734 * 346.35014 * 25 24 13 42 42 H 1.08998 * 113.57667 * 270.13234 * 26 25 24 43 43 H 1.09002 * 113.65153 * 139.34879 * 26 25 24 44 44 H 1.08997 * 113.66038 * 13.65790 * 27 24 13 45 45 H 1.09004 * 113.66122 * 144.61621 * 27 24 13 46 46 H 1.07997 * 120.07436 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5808 1.2082 0.0005 5 6 4.2812 0.0194 0.0019 6 6 3.5912 -1.1936 0.0022 7 6 4.3353 -2.4711 0.0030 8 8 3.7315 -3.5261 0.0028 9 7 5.6830 -2.4660 0.0030 10 6 6.4204 -3.7319 0.0033 11 1 5.8494 -4.5549 0.4332 12 6 7.0675 -4.0704 -1.3519 13 6 8.3132 -3.3035 -0.8627 14 1 9.2557 -3.7839 -1.1253 15 7 8.2910 -1.8757 -1.1902 16 6 9.1209 -1.3830 -2.1616 17 1 9.7922 -2.0470 -2.6860 18 6 9.0994 -0.0302 -2.4722 19 7 8.2817 0.7789 -1.8327 20 14 10.2321 0.6419 -3.7968 21 1 9.9350 -0.0275 -5.0886 22 1 10.0175 2.1047 -3.9360 23 1 11.6446 0.3831 -3.4185 24 6 7.8406 -3.6147 0.5578 25 6 8.4685 -4.7483 1.3694 26 6 9.2815 -3.6614 2.0959 27 6 8.1603 -2.6753 1.7211 28 6 2.1952 -1.1954 0.0059 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6538 2.1325 -0.0004 33 1 4.1136 2.1476 0.0001 34 1 5.3612 0.0276 0.0019 35 1 6.1648 -1.6241 0.0028 36 1 7.2413 -5.1365 -1.4980 37 1 6.5708 -3.6017 -2.2015 38 1 7.6883 -1.2794 -0.7190 39 1 8.2670 1.7242 -2.0495 40 1 7.7605 -5.2692 2.0140 41 1 9.0793 -5.4267 0.7737 42 1 10.2357 -3.4385 1.6185 43 1 9.3744 -3.8287 3.1689 44 1 8.5247 -1.6975 1.4063 45 1 7.3649 -2.6122 2.4637 46 1 1.6552 -2.1307 0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078544078.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:53 Heat of formation + Delta-G solvation = 26.966488 kcal Electronic energy + Delta-G solvation = -26635.578303 eV Core-core repulsion = 23104.858078 eV Total energy + Delta-G solvation = -3530.720225 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.07409 -40.78636 -39.24945 -36.67865 -35.46398 -34.33372 -33.30170 -32.15839 -31.55811 -27.82097 -26.79142 -26.54470 -25.52435 -25.14055 -23.63407 -22.79822 -21.70809 -21.14231 -19.81261 -18.88990 -18.28959 -17.39588 -16.98642 -16.72032 -16.30932 -16.12289 -16.07524 -15.83247 -15.51388 -15.08296 -14.81252 -14.57991 -14.53313 -14.05307 -13.83200 -13.47735 -13.28142 -13.12180 -13.04480 -12.88419 -12.81185 -12.68890 -12.58306 -12.51481 -12.21573 -12.01608 -11.95254 -11.83259 -11.33218 -11.22384 -10.97946 -10.85529 -10.66492 -10.09055 -9.84366 -9.66714 -9.00622 -7.95207 -5.22381 -0.16583 0.36824 1.48510 1.49680 1.55266 1.78706 2.06791 2.55448 2.84244 3.37012 3.37561 3.56077 3.70258 3.80948 3.83157 3.94370 3.95172 4.00819 4.16003 4.16696 4.24747 4.35626 4.40818 4.52019 4.64716 4.69681 4.77017 4.84901 4.85596 4.88343 4.90329 4.97723 4.98708 5.09678 5.12721 5.18095 5.23494 5.26101 5.32444 5.45294 5.51136 5.54422 5.56854 5.60597 5.67090 5.95215 6.27772 6.45912 7.09555 7.34621 8.06082 8.31016 9.27404 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.005088 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.406182 B = 5501.380063 C = 7496.017284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.089 4.089 4 C -0.125 4.125 5 C -0.095 4.095 6 C -0.152 4.152 7 C 0.555 3.445 8 O -0.579 6.579 9 N -0.692 5.692 10 C 0.134 3.866 11 H 0.094 0.906 12 C -0.179 4.179 13 C 0.178 3.822 14 H 0.068 0.932 15 N -0.709 5.709 16 C -0.248 4.248 17 H 0.074 0.926 18 C -0.062 4.062 19 N -0.958 5.958 20 Si 0.967 3.033 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.279 1.279 24 C -0.121 4.121 25 C -0.092 4.092 26 C -0.125 4.125 27 C -0.130 4.130 28 C -0.076 4.076 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.161 0.839 33 H 0.143 0.857 34 H 0.114 0.886 35 H 0.403 0.597 36 H 0.105 0.895 37 H 0.040 0.960 38 H 0.373 0.627 39 H 0.252 0.748 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.582 -3.171 8.129 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.107 4.107 4 C -0.143 4.143 5 C -0.114 4.114 6 C -0.155 4.155 7 C 0.344 3.656 8 O -0.461 6.461 9 N -0.342 5.342 10 C 0.029 3.971 11 H 0.112 0.888 12 C -0.221 4.221 13 C 0.067 3.933 14 H 0.086 0.914 15 N -0.348 5.348 16 C -0.379 4.379 17 H 0.092 0.908 18 C -0.255 4.255 19 N -0.608 5.608 20 Si 0.797 3.203 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.206 1.206 24 C -0.123 4.123 25 C -0.130 4.130 26 C -0.162 4.162 27 C -0.168 4.168 28 C -0.095 4.095 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.178 0.822 33 H 0.161 0.839 34 H 0.132 0.868 35 H 0.241 0.759 36 H 0.124 0.876 37 H 0.058 0.942 38 H 0.207 0.793 39 H 0.061 0.939 40 H 0.118 0.882 41 H 0.101 0.899 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.824 -3.862 7.987 13.237 hybrid contribution 0.856 1.163 -0.965 1.737 sum -8.968 -2.699 7.022 11.705 Atomic orbital electron populations 1.20847 0.88141 1.04156 1.03431 1.20256 0.98154 0.91970 0.99489 1.21634 0.93632 0.98894 0.96513 1.21380 0.95140 0.97975 0.99755 1.21444 0.99948 0.92575 0.97476 1.19950 0.95126 0.92271 1.08189 1.18658 0.82335 0.89253 0.75357 1.90665 1.69106 1.33585 1.52760 1.45746 1.05633 1.10042 1.72814 1.21734 0.91816 0.85992 0.97540 0.88757 1.24277 0.99938 1.01492 0.96369 1.21131 0.95636 0.84702 0.91827 0.91421 1.42180 1.46053 1.03097 1.43495 1.19557 1.14355 0.92189 1.11809 0.90780 1.25385 1.01430 0.96536 1.02179 1.69727 1.41716 1.03792 1.45552 0.85317 0.78947 0.76699 0.79352 1.21130 1.22155 1.20556 1.23466 0.93651 1.00291 0.94889 1.22543 0.98489 0.94755 0.97202 1.22699 0.96918 0.95672 1.00950 1.22581 0.99296 0.97822 0.97053 1.21229 0.91892 0.99291 0.97043 0.90147 0.90958 0.89281 0.82167 0.83884 0.86797 0.75853 0.87624 0.94155 0.79253 0.93868 0.88244 0.89880 0.90928 0.89710 0.93352 0.90041 0.85205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.10 -2.30 5.87 -19.90 -0.12 -2.42 16 3 C -0.09 -1.97 9.69 22.33 0.22 -1.76 16 4 C -0.12 -3.41 10.03 22.23 0.22 -3.19 16 5 C -0.10 -3.21 9.54 22.53 0.21 -2.99 16 6 C -0.15 -5.31 5.87 -20.09 -0.12 -5.42 16 7 C 0.55 21.67 7.77 86.79 0.67 22.35 16 8 O -0.58 -24.79 15.97 -3.89 -0.06 -24.85 16 9 N -0.69 -26.24 4.88 -444.03 -2.17 -28.41 16 10 C 0.13 4.71 4.09 45.28 0.19 4.90 16 11 H 0.09 3.26 7.50 -2.39 -0.02 3.24 16 12 C -0.18 -6.56 7.70 31.33 0.24 -6.32 16 13 C 0.18 6.89 4.37 45.38 0.20 7.08 16 14 H 0.07 2.59 8.10 -2.39 -0.02 2.57 16 15 N -0.71 -33.90 4.74 -321.07 -1.52 -35.42 16 16 C -0.25 -13.22 9.97 84.03 0.84 -12.38 16 17 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 18 C -0.06 -3.39 5.50 84.86 0.47 -2.93 16 19 N -0.96 -54.66 13.06 21.65 0.28 -54.38 16 20 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 21 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C -0.12 -3.83 0.77 -52.32 -0.04 -3.88 16 25 C -0.09 -2.21 7.84 30.89 0.24 -1.97 16 26 C -0.13 -3.17 8.08 31.23 0.25 -2.92 16 27 C -0.13 -4.06 7.24 30.88 0.22 -3.84 16 28 C -0.08 -2.26 9.24 22.53 0.21 -2.05 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.07 1.05 8.08 -2.39 -0.02 1.04 16 31 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 33 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.11 4.25 6.41 -2.91 -0.02 4.23 16 35 H 0.40 16.08 4.17 -92.71 -0.39 15.69 16 36 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 37 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.37 18.54 5.16 -92.71 -0.48 18.06 16 39 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 40 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 1.82 7.58 -2.39 -0.02 1.80 16 45 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 46 H 0.13 3.83 7.65 -2.91 -0.02 3.81 16 Total: -1.00 -65.17 373.26 3.31 -61.86 By element: Atomic # 1 Polarization: 52.88 SS G_CDS: 0.12 Total: 53.01 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: 4.62 Total: -18.70 kcal Atomic # 7 Polarization: -114.80 SS G_CDS: -3.40 Total: -118.21 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.06 Total: -24.85 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -65.17 3.31 -61.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078544078.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.829 kcal (2) G-P(sol) polarization free energy of solvation -65.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds