Wall clock time and date at job start Fri Apr 10 2020 23:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47895 * 111.00050 * 2 1 4 4 C 1.54580 * 102.64273 * 265.49609 * 3 2 1 5 5 C 1.51629 * 102.84964 * 334.37497 * 4 3 2 6 6 C 1.38085 * 131.38463 * 196.28032 * 5 4 3 7 7 C 1.37998 * 120.28201 * 179.59330 * 6 5 4 8 8 C 1.39613 * 119.74521 * 359.94987 * 7 6 5 9 9 C 1.47855 * 120.02650 * 180.10742 * 8 7 6 10 10 O 1.21550 * 119.99811 * 209.40276 * 9 8 7 11 11 N 1.34779 * 120.00620 * 29.40244 * 9 8 7 12 12 C 1.46500 * 119.99726 * 353.63924 * 11 9 8 13 13 C 1.50695 * 109.47207 * 261.26503 * 12 11 9 14 14 H 1.08003 * 119.99964 * 0.02562 * 13 12 11 15 15 C 1.37882 * 119.99955 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99961 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99777 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47368 * 60.00596 * 17 15 13 19 19 H 1.48503 * 109.46667 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47063 * 300.00158 * 17 15 13 21 21 C 1.46500 * 120.00033 * 173.64104 * 11 9 8 22 22 C 1.52994 * 109.47233 * 84.54546 * 21 11 9 23 23 C 1.52999 * 117.49961 * 243.80518 * 22 21 11 24 24 C 1.52996 * 117.50018 * 175.14388 * 22 21 11 25 25 C 1.39267 * 119.94259 * 0.37191 * 8 7 6 26 26 C 1.39093 * 107.90551 * 16.06000 * 5 4 3 27 27 H 1.09000 * 109.47418 * 59.87695 * 1 2 3 28 28 H 1.09003 * 109.46856 * 179.87435 * 1 2 3 29 29 H 1.08995 * 109.47316 * 299.87229 * 1 2 3 30 30 H 1.09004 * 110.77380 * 147.20556 * 3 2 1 31 31 H 1.08998 * 110.77158 * 23.78620 * 3 2 1 32 32 H 1.09005 * 110.73759 * 216.04023 * 4 3 2 33 33 H 1.09000 * 110.89552 * 92.78901 * 4 3 2 34 34 H 1.08001 * 119.86015 * 359.60673 * 6 5 4 35 35 H 1.08002 * 120.12657 * 179.97438 * 7 6 5 36 36 H 1.09003 * 109.46995 * 21.26874 * 12 11 9 37 37 H 1.09000 * 109.47093 * 141.26382 * 12 11 9 38 38 H 0.96998 * 120.00111 * 180.02562 * 16 15 13 39 39 H 1.08994 * 109.47288 * 324.54258 * 21 11 9 40 40 H 1.09003 * 109.46452 * 204.54564 * 21 11 9 41 41 H 1.08998 * 115.55037 * 29.47389 * 22 21 11 42 42 H 1.09004 * 117.49499 * 359.97438 * 23 22 21 43 43 H 1.09002 * 117.50238 * 145.01871 * 23 22 21 44 44 H 1.09003 * 117.50178 * 214.97478 * 24 22 21 45 45 H 1.08998 * 117.50011 * 0.02562 * 24 22 21 46 46 H 1.07999 * 119.95891 * 179.76272 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9990 1.3807 0.0000 4 6 2.2308 1.6541 -1.5037 5 6 2.4317 0.2629 -2.0723 6 6 2.9612 -0.1645 -3.2739 7 6 3.0435 -1.5124 -3.5578 8 6 2.5898 -2.4460 -2.6242 9 6 2.6772 -3.8918 -2.9210 10 8 1.8670 -4.6607 -2.4415 11 7 3.6551 -4.3572 -3.7232 12 6 4.5456 -3.4199 -4.4121 13 6 4.0752 -3.2308 -5.8312 14 1 3.2001 -3.7560 -6.1845 15 6 4.7614 -2.3865 -6.6782 16 7 5.8267 -1.7466 -6.2478 17 14 4.1778 -2.1516 -8.4371 18 1 2.7956 -1.6087 -8.4317 19 1 5.0806 -1.2015 -9.1353 20 1 4.1937 -3.4582 -9.1425 21 6 3.8275 -5.8005 -3.9062 22 6 2.8814 -6.2920 -5.0034 23 6 1.7896 -7.2858 -4.6018 24 6 2.9901 -7.7587 -5.4252 25 6 2.0497 -2.0140 -1.4153 26 6 1.9711 -0.6536 -1.1330 27 1 -0.3634 0.5157 -0.8889 28 1 -0.3633 -1.0277 -0.0023 29 1 -0.3634 0.5118 0.8911 30 1 2.9374 1.4346 0.5520 31 1 1.2669 2.0758 0.4110 32 1 3.1220 2.2641 -1.6522 33 1 1.3591 2.1317 -1.9509 34 1 3.3127 0.5593 -3.9944 35 1 3.4578 -1.8439 -4.4986 36 1 4.5340 -2.4606 -3.8945 37 1 5.5601 -3.8185 -4.4156 38 1 6.3092 -1.1523 -6.8435 39 1 3.5998 -6.3149 -2.9727 40 1 4.8578 -6.0096 -4.1943 41 1 2.6385 -5.5628 -5.7763 42 1 1.7457 -7.5897 -3.5559 43 1 0.8285 -7.2106 -5.1106 44 1 2.8184 -7.9944 -6.4755 45 1 3.7355 -8.3735 -4.9208 46 1 1.6951 -2.7358 -0.6945 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347021484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:19 Heat of formation + Delta-G solvation = 45.590580 kcal Electronic energy + Delta-G solvation = -26702.010977 eV Core-core repulsion = 23172.098354 eV Total energy + Delta-G solvation = -3529.912624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.94354 -40.78319 -38.29272 -37.57782 -36.43743 -34.48488 -33.33631 -31.19886 -30.41975 -29.45582 -27.82168 -26.77285 -25.08599 -24.22327 -23.20306 -22.71783 -21.92693 -21.70166 -20.31181 -18.64147 -18.14417 -17.51722 -17.12621 -16.78772 -16.48332 -16.38974 -16.17252 -15.58694 -15.30000 -14.92342 -14.83241 -14.66333 -14.39989 -14.13712 -13.98560 -13.86579 -13.47929 -13.43315 -13.06407 -12.90137 -12.82100 -12.71738 -12.63118 -12.34562 -12.24660 -12.12908 -11.92102 -11.59282 -11.51156 -11.24356 -10.87967 -10.70145 -10.60300 -10.22835 -9.85308 -9.45890 -8.84567 -8.21207 -6.35199 -0.05215 0.39293 1.42412 1.44270 1.50753 1.83794 2.18892 2.40775 2.71933 2.83640 3.00062 3.07960 3.58386 3.76201 3.84812 3.88365 4.04743 4.05702 4.16151 4.17606 4.28738 4.43721 4.44371 4.51721 4.58374 4.65653 4.72654 4.75504 4.76281 4.79771 4.84957 4.92433 4.93692 4.99642 5.02695 5.14371 5.21665 5.27674 5.33353 5.39535 5.53012 5.53419 5.65843 5.74204 5.84325 5.97366 6.02357 6.24900 6.54068 6.79550 7.24759 7.37480 8.82978 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.005102 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.550229 B = 5486.693487 C = 7408.431132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.506 5.506 3 C 0.051 3.949 4 C -0.107 4.107 5 C -0.120 4.120 6 C -0.110 4.110 7 C -0.120 4.120 8 C -0.139 4.139 9 C 0.554 3.446 10 O -0.584 6.584 11 N -0.588 5.588 12 C 0.218 3.782 13 C -0.541 4.541 14 H 0.056 0.944 15 C 0.034 3.966 16 N -0.907 5.907 17 Si 0.947 3.053 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.274 1.274 21 C 0.156 3.844 22 C -0.180 4.180 23 C -0.171 4.171 24 C -0.156 4.156 25 C -0.068 4.068 26 C 0.060 3.940 27 H 0.033 0.967 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.092 0.908 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.131 0.869 35 H 0.183 0.817 36 H 0.067 0.933 37 H 0.014 0.986 38 H 0.270 0.730 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.109 0.891 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 4.455 7.808 10.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.224 5.224 3 C -0.075 4.075 4 C -0.145 4.145 5 C -0.123 4.123 6 C -0.129 4.129 7 C -0.138 4.138 8 C -0.142 4.142 9 C 0.343 3.657 10 O -0.467 6.467 11 N -0.316 5.316 12 C 0.098 3.902 13 C -0.579 4.579 14 H 0.074 0.926 15 C -0.168 4.168 16 N -0.544 5.544 17 Si 0.773 3.227 18 H -0.199 1.199 19 H -0.204 1.204 20 H -0.199 1.199 21 C 0.034 3.966 22 C -0.199 4.199 23 C -0.208 4.208 24 C -0.193 4.193 25 C -0.089 4.089 26 C -0.036 4.036 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.115 0.885 34 H 0.149 0.851 35 H 0.199 0.801 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.127 0.873 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.260 3.930 8.512 11.273 hybrid contribution -0.164 0.284 -1.911 1.939 sum -6.423 4.214 6.601 10.129 Atomic orbital electron populations 1.22555 0.84524 1.02645 1.02249 1.60240 1.09521 1.16004 1.36625 1.23325 1.02352 0.86905 0.94885 1.21818 1.04238 0.92163 0.96234 1.21613 0.99548 0.97536 0.93577 1.20578 1.00280 0.95365 0.96672 1.23162 0.94932 0.93176 1.02483 1.19661 1.04934 0.92928 0.96685 1.18493 0.80743 0.88101 0.78317 1.90627 1.41450 1.59076 1.55534 1.48040 1.31760 1.07721 1.44071 1.20166 0.88355 0.89995 0.91723 1.21490 1.12820 1.27086 0.96536 0.92551 1.25540 0.94584 0.94964 1.01746 1.69997 1.18280 1.28504 1.37661 0.85765 0.78369 0.78183 0.80391 1.19882 1.20423 1.19889 1.20940 0.98940 0.79735 0.97024 1.22659 1.02405 0.93499 1.01332 1.22937 0.93800 1.03554 1.00545 1.23018 1.00471 0.94927 1.00873 1.20359 0.98789 0.94075 0.95675 1.19397 1.00635 0.92502 0.91039 0.94801 0.92181 0.87977 0.88930 0.86581 0.87939 0.88534 0.85064 0.80091 0.91559 0.96750 0.92026 0.91167 0.89760 0.89564 0.89060 0.89313 0.87940 0.87271 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 9.28 127.69 1.19 1.73 16 2 N -0.51 -13.01 5.33 -713.53 -3.80 -16.82 16 3 C 0.05 0.96 7.00 86.65 0.61 1.57 16 4 C -0.11 -2.25 6.97 30.68 0.21 -2.03 16 5 C -0.12 -3.75 6.23 -19.40 -0.12 -3.88 16 6 C -0.11 -4.03 10.01 22.18 0.22 -3.81 16 7 C -0.12 -5.12 7.49 22.55 0.17 -4.95 16 8 C -0.14 -5.95 5.59 -20.15 -0.11 -6.07 16 9 C 0.55 25.41 7.42 86.79 0.64 26.06 16 10 O -0.58 -28.21 16.42 -3.87 -0.06 -28.27 16 11 N -0.59 -26.17 2.48 -829.58 -2.06 -28.23 16 12 C 0.22 10.47 4.66 85.63 0.40 10.87 16 13 C -0.54 -27.26 7.41 25.60 0.19 -27.07 16 14 H 0.06 2.92 6.11 -2.91 -0.02 2.90 16 15 C 0.03 1.71 5.33 84.66 0.45 2.16 16 16 N -0.91 -47.36 13.29 21.45 0.28 -47.08 16 17 Si 0.95 40.47 29.54 68.60 2.03 42.50 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 C 0.16 6.07 5.59 86.38 0.48 6.55 16 22 C -0.18 -6.64 5.93 -10.80 -0.06 -6.70 16 23 C -0.17 -5.48 10.18 30.62 0.31 -5.16 16 24 C -0.16 -4.41 10.25 30.62 0.31 -4.09 16 25 C -0.07 -2.62 9.62 22.74 0.22 -2.40 16 26 C 0.06 1.97 5.58 38.25 0.21 2.18 16 27 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.50 8.11 -2.39 -0.02 1.48 16 30 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.12 1.41 7.76 -2.39 -0.02 1.39 16 32 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 33 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.18 8.70 3.03 -2.91 -0.01 8.69 16 36 H 0.07 3.31 3.98 -2.84 -0.01 3.30 16 37 H 0.01 0.74 8.00 -2.39 -0.02 0.72 16 38 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 39 H 0.07 2.64 7.42 -2.39 -0.02 2.62 16 40 H 0.08 3.09 7.93 -2.39 -0.02 3.07 16 41 H 0.09 3.69 6.34 -2.39 -0.02 3.67 16 42 H 0.09 2.91 8.03 -2.38 -0.02 2.90 16 43 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.12 4.63 7.89 -2.91 -0.02 4.61 16 Total: -1.00 -60.67 369.05 2.70 -57.97 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.98 Total: 34.97 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: 5.32 Total: -15.05 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -5.57 Total: -92.13 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -0.06 Total: -28.27 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -60.67 2.70 -57.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347021484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.566 kcal (2) G-P(sol) polarization free energy of solvation -60.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds