Wall clock time and date at job start Fri Apr 10 2020 23:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35906 * 116.99703 * 2 1 4 4 C 1.38757 * 120.17447 * 359.97438 * 3 2 1 5 5 C 1.37841 * 119.71112 * 179.88058 * 4 3 2 6 6 C 1.38954 * 120.62684 * 0.02562 * 5 4 3 7 7 C 1.37713 * 119.76455 * 0.26435 * 6 5 4 8 8 C 1.38425 * 120.17170 * 179.97438 * 3 2 1 9 9 C 1.50639 * 122.55473 * 179.26404 * 7 6 5 10 10 C 1.52733 * 110.58516 * 18.11129 * 9 7 6 11 11 C 1.53326 * 108.38455 * 308.80596 * 10 9 7 12 12 H 1.08999 * 109.67705 * 310.09324 * 11 10 9 13 13 N 1.46899 * 109.67582 * 189.55644 * 11 10 9 14 14 C 1.46902 * 111.00185 * 155.00295 * 13 11 10 15 15 C 1.52995 * 109.47348 * 179.97438 * 14 13 11 16 16 H 1.08996 * 109.47421 * 304.99873 * 15 14 13 17 17 C 1.47204 * 109.46892 * 65.00075 * 15 14 13 18 18 N 9.94883 * 165.25383 * 159.33085 * 3 1 2 19 19 C 1.53004 * 109.47182 * 184.99219 * 15 14 13 20 20 C 1.50699 * 109.47112 * 175.00121 * 19 15 14 21 21 H 1.07997 * 119.99807 * 0.02562 * 20 19 15 22 22 C 1.37876 * 119.99817 * 180.02562 * 20 19 15 23 23 N 1.31509 * 120.00283 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99824 * 180.02562 * 22 20 19 25 25 H 1.48509 * 109.47296 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47393 * 119.99348 * 24 22 20 27 27 H 1.48502 * 109.47233 * 239.99819 * 24 22 20 28 28 C 1.50646 * 117.70343 * 180.63816 * 6 5 4 29 29 H 1.09007 * 109.47351 * 300.00195 * 1 2 3 30 30 H 1.09004 * 109.47655 * 60.00188 * 1 2 3 31 31 H 1.09000 * 109.47377 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.14805 * 359.90702 * 4 3 2 33 33 H 1.07995 * 119.68469 * 179.97438 * 5 4 3 34 34 H 1.07997 * 119.75104 * 359.71766 * 8 3 2 35 35 H 1.08992 * 109.25883 * 138.39586 * 9 7 6 36 36 H 1.09004 * 109.25503 * 257.83410 * 9 7 6 37 37 H 1.08994 * 109.68201 * 68.52450 * 10 9 7 38 38 H 1.08998 * 109.68439 * 189.08435 * 10 9 7 39 39 H 1.00907 * 111.00009 * 278.95043 * 13 11 10 40 40 H 1.09006 * 109.46896 * 299.99567 * 14 13 11 41 41 H 1.08996 * 109.47246 * 59.99360 * 14 13 11 42 42 H 1.08996 * 109.47257 * 295.00416 * 19 15 14 43 43 H 1.08999 * 109.46623 * 55.00149 * 19 15 14 44 44 H 0.96999 * 120.00240 * 180.02562 * 23 22 20 45 45 H 1.09003 * 109.24614 * 317.93975 * 28 6 5 46 46 H 1.09001 * 109.24822 * 77.35210 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2936 2.3769 -0.0005 5 6 1.9293 3.6000 0.0020 6 6 3.3167 3.6768 0.0045 7 6 4.0653 2.5210 -0.0010 8 6 3.4280 1.2876 0.0005 9 6 5.5716 2.5309 -0.0150 10 6 6.1038 3.8939 0.4228 11 6 5.4053 4.9758 -0.4093 12 1 5.4634 4.7198 -1.4672 13 7 6.0534 6.2735 -0.1775 14 6 5.8519 7.1743 -1.3203 15 6 6.5391 8.5127 -1.0423 16 1 6.1745 8.9192 -0.0989 17 6 7.9945 8.3089 -0.9590 18 7 9.1185 8.1506 -0.8938 19 6 6.2253 9.4921 -2.1750 20 6 6.7989 10.8454 -1.8423 21 1 7.3341 10.9920 -0.9157 22 6 6.6405 11.8962 -2.7207 23 7 5.9893 11.7175 -3.8492 24 14 7.3521 13.5735 -2.3085 25 1 8.0339 13.5117 -0.9906 26 1 8.3303 13.9668 -3.3543 27 1 6.2575 14.5755 -2.2525 28 6 3.9423 5.0471 0.0220 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2148 2.3264 -0.0025 33 1 1.3434 4.5072 0.0011 34 1 4.0150 0.3811 0.0056 35 1 5.9425 1.7647 0.6657 36 1 5.9232 2.3151 -1.0240 37 1 5.8899 4.0491 1.4803 38 1 7.1798 3.9392 0.2549 39 1 5.7231 6.6951 0.6777 40 1 6.2796 6.7252 -2.2168 41 1 4.7848 7.3383 -1.4699 42 1 6.6671 9.1284 -3.1027 43 1 5.1451 9.5748 -2.2950 44 1 5.8781 12.4567 -4.4673 45 1 3.3972 5.6997 -0.6601 46 1 3.8853 5.4552 1.0311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612049424.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:10 Heat of formation + Delta-G solvation = -11.438556 kcal Electronic energy + Delta-G solvation = -24841.491205 eV Core-core repulsion = 21309.105613 eV Total energy + Delta-G solvation = -3532.385592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.69520 -39.06094 -37.34482 -35.92501 -34.15796 -33.34305 -32.41163 -31.11453 -29.72643 -28.70300 -27.10274 -25.92488 -23.90076 -22.75484 -22.46127 -21.95111 -21.61046 -19.74564 -17.95609 -17.00825 -16.56549 -16.38131 -16.06967 -15.89930 -15.14483 -14.90229 -14.55589 -14.47184 -14.31623 -13.85401 -13.77977 -13.51359 -13.33946 -12.92245 -12.73798 -12.47743 -12.31333 -12.27737 -12.07715 -11.97586 -11.75158 -11.41593 -11.22287 -11.18008 -11.07447 -10.93485 -10.82865 -10.67131 -10.61039 -10.46230 -10.23052 -9.53106 -9.20802 -8.97978 -8.46925 -8.30420 -8.22433 -6.10246 -4.13246 1.09572 1.20887 2.96575 3.28009 3.36395 3.41020 3.48556 3.75084 3.84721 4.15056 4.41216 4.44775 4.56395 4.68612 4.73138 4.78236 4.83184 4.90970 4.91486 4.97164 5.04457 5.09742 5.28016 5.30825 5.35730 5.44845 5.47894 5.57607 5.64150 5.67690 5.78639 5.82216 5.83916 6.00205 6.08288 6.11170 6.17361 6.21516 6.40118 6.45642 6.50745 6.59691 7.11215 7.14532 7.41830 7.49858 7.53767 7.85385 8.22794 8.60315 8.91953 9.52340 11.00671 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024062 B = 0.002259 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.394116 B =12394.241218 C =13268.178791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.120 3.880 4 C -0.209 4.209 5 C -0.079 4.079 6 C -0.104 4.104 7 C -0.034 4.034 8 C -0.155 4.155 9 C -0.081 4.081 10 C -0.107 4.107 11 C 0.090 3.910 12 H 0.082 0.918 13 N -0.687 5.687 14 C 0.066 3.934 15 C 0.009 3.991 16 H 0.099 0.901 17 C 0.255 3.745 18 N -0.479 5.479 19 C 0.031 3.969 20 C -0.525 4.525 21 H 0.057 0.943 22 C 0.061 3.939 23 N -0.892 5.892 24 Si 0.891 3.109 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.283 1.283 28 C -0.106 4.106 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.128 0.872 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.341 0.659 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.026 0.974 43 H 0.037 0.963 44 H 0.262 0.738 45 H 0.075 0.925 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.083 -22.335 8.660 27.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.076 3.924 4 C -0.228 4.228 5 C -0.098 4.098 6 C -0.105 4.105 7 C -0.034 4.034 8 C -0.174 4.174 9 C -0.119 4.119 10 C -0.145 4.145 11 C -0.021 4.021 12 H 0.100 0.900 13 N -0.316 5.316 14 C -0.064 4.064 15 C -0.013 4.013 16 H 0.117 0.883 17 C -0.062 4.062 18 N -0.156 5.156 19 C -0.008 4.008 20 C -0.563 4.563 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.530 5.530 24 Si 0.719 3.281 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.209 1.209 28 C -0.145 4.145 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.143 0.857 33 H 0.142 0.858 34 H 0.146 0.854 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.160 0.840 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.071 0.929 45 H 0.094 0.906 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.728 -22.873 8.383 26.619 hybrid contribution -1.520 1.449 0.167 2.107 sum -12.248 -21.425 8.550 26.118 Atomic orbital electron populations 1.23034 0.78491 1.03818 1.01354 1.86054 1.21297 1.27090 1.88958 1.18897 0.92336 0.84057 0.97142 1.21139 0.99873 0.92397 1.09353 1.20993 0.94015 0.97141 0.97616 1.19484 0.92993 0.94677 1.03303 1.19467 0.95756 0.91311 0.96913 1.20387 0.91297 0.98177 1.07514 1.20521 0.90206 0.98624 1.02517 1.21540 1.00859 0.92421 0.99730 1.21535 0.90106 0.90244 1.00176 0.90007 1.60647 1.61424 1.03844 1.05695 1.22111 0.98864 0.91643 0.93795 1.19215 0.82009 0.95897 1.04140 0.88346 1.28893 0.94906 0.90770 0.91610 1.81019 1.13130 1.11087 1.10390 1.19171 0.98151 0.92024 0.91407 1.21186 1.35566 0.94431 1.05148 0.92427 1.24960 0.95071 0.99105 0.94921 1.69945 1.41364 1.32063 1.09667 0.86538 0.78922 0.84034 0.78599 1.19666 1.20969 1.20884 1.21211 0.97416 0.93594 1.02257 0.92723 0.92663 0.88338 0.85650 0.85805 0.85430 0.90432 0.90170 0.91739 0.90294 0.84010 0.90496 0.93260 0.95561 0.94480 0.92860 0.90618 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.32 -3.09 10.50 -19.44 -0.20 -3.29 16 3 C 0.12 1.24 6.68 -39.32 -0.26 0.98 16 4 C -0.21 -1.94 9.04 -39.53 -0.36 -2.30 16 5 C -0.08 -0.76 9.60 -39.46 -0.38 -1.14 16 6 C -0.10 -1.05 5.74 -104.57 -0.60 -1.65 16 7 C -0.03 -0.35 5.74 -104.63 -0.60 -0.95 16 8 C -0.16 -1.58 9.55 -39.29 -0.38 -1.96 16 9 C -0.08 -0.72 5.67 -28.05 -0.16 -0.88 16 10 C -0.11 -1.05 5.60 -26.70 -0.15 -1.20 16 11 C 0.09 0.95 2.48 -67.70 -0.17 0.78 16 12 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 13 N -0.69 -8.41 5.97 -106.71 -0.64 -9.04 16 14 C 0.07 0.93 4.85 -3.83 -0.02 0.91 16 15 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 16 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 17 C 0.26 5.28 13.67 -20.73 -0.28 5.00 16 18 N -0.48 -10.86 18.54 42.19 0.78 -10.08 16 19 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 20 C -0.53 -13.90 8.60 -34.44 -0.30 -14.19 16 21 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 22 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 23 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 24 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 27 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 28 C -0.11 -1.02 4.98 -28.07 -0.14 -1.16 16 29 H 0.05 0.27 7.67 -51.92 -0.40 -0.13 16 30 H 0.05 0.28 7.67 -51.93 -0.40 -0.12 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.13 0.90 6.33 -52.49 -0.33 0.57 16 33 H 0.12 0.99 8.05 -52.49 -0.42 0.57 16 34 H 0.13 1.15 8.05 -52.49 -0.42 0.73 16 35 H 0.08 0.60 8.12 -51.93 -0.42 0.17 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.34 3.76 8.33 -39.29 -0.33 3.43 16 40 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 41 H 0.05 0.64 7.70 -51.93 -0.40 0.24 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 46 H 0.08 0.69 7.93 -51.93 -0.41 0.28 16 LS Contribution 379.69 15.07 5.72 5.72 Total: -1.00 -31.32 379.69 -9.11 -40.43 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.25 Total: -0.79 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -3.24 Total: -14.48 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.88 Total: -43.84 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.20 Total: -3.29 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.32 -9.11 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612049424.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.989 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds