Wall clock time and date at job start Fri Apr 10 2020 23:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81403 * 103.00147 * 2 1 4 4 C 1.53000 * 109.47178 * 299.32247 * 3 2 1 5 5 N 1.46505 * 109.46823 * 304.63514 * 4 3 2 6 6 C 1.34779 * 119.99715 * 175.48214 * 5 4 3 7 7 O 1.21283 * 120.00088 * 0.02562 * 6 5 4 8 8 C 1.50698 * 120.00098 * 179.97438 * 6 5 4 9 9 H 1.09001 * 109.47170 * 320.00987 * 8 6 5 10 10 N 1.46895 * 109.47388 * 200.00139 * 8 6 5 11 11 C 1.53004 * 109.46773 * 80.00290 * 8 6 5 12 12 C 1.53002 * 109.47072 * 185.00288 * 11 8 6 13 13 C 1.50700 * 109.46934 * 180.02562 * 12 11 8 14 14 H 1.07994 * 120.00201 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99705 * 179.97438 * 13 12 11 16 16 N 1.31519 * 119.99868 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99941 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47142 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46989 * 120.00017 * 17 15 13 20 20 H 1.48496 * 109.47009 * 239.99684 * 17 15 13 21 21 C 1.52994 * 109.47012 * 59.32203 * 3 2 1 22 22 C 1.53000 * 109.47344 * 179.97438 * 21 3 2 23 23 C 1.52992 * 109.47076 * 300.00220 * 22 21 3 24 24 C 1.53005 * 109.47550 * 59.99655 * 23 22 21 25 25 C 1.52994 * 109.46934 * 300.00323 * 24 23 22 26 26 H 1.09007 * 109.46253 * 297.70627 * 1 2 3 27 27 H 1.09001 * 109.47242 * 57.70264 * 1 2 3 28 28 H 1.08995 * 109.47341 * 177.71270 * 1 2 3 29 29 H 1.08997 * 109.46863 * 184.64106 * 4 3 2 30 30 H 1.08995 * 109.46966 * 64.63349 * 4 3 2 31 31 H 0.96993 * 120.00125 * 355.48884 * 5 4 3 32 32 H 1.00903 * 110.99935 * 176.04541 * 10 8 6 33 33 H 1.00900 * 111.00368 * 300.00640 * 10 8 6 34 34 H 1.08997 * 109.47152 * 305.00131 * 11 8 6 35 35 H 1.09002 * 109.47308 * 65.00254 * 11 8 6 36 36 H 1.09007 * 109.46973 * 299.99860 * 12 11 8 37 37 H 1.09002 * 109.47082 * 59.99828 * 12 11 8 38 38 H 0.97005 * 119.99331 * 180.02562 * 16 15 13 39 39 H 1.09008 * 109.47325 * 299.99805 * 21 3 2 40 40 H 1.09004 * 109.47466 * 59.99662 * 21 3 2 41 41 H 1.09002 * 109.47108 * 179.97438 * 22 21 3 42 42 H 1.09005 * 109.46541 * 59.99950 * 22 21 3 43 43 H 1.08996 * 109.47442 * 299.99823 * 23 22 21 44 44 H 1.09004 * 109.47153 * 179.97438 * 23 22 21 45 45 H 1.08996 * 109.47279 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.46627 * 59.99747 * 24 23 22 47 47 H 1.09004 * 109.47368 * 299.99581 * 25 24 23 48 48 H 1.08997 * 109.47519 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 1.6486 2.4234 -1.2577 5 7 2.1396 1.7174 -2.4438 6 6 1.6925 2.0635 -3.6672 7 8 0.8839 2.9597 -3.7863 8 6 2.1979 1.3378 -4.8874 9 1 3.2659 1.1475 -4.7805 10 7 1.9644 2.1632 -6.0799 11 6 1.4552 0.0082 -5.0340 12 6 2.0532 -0.7843 -6.1982 13 6 1.3213 -2.0936 -6.3430 14 1 0.5110 -2.3364 -5.6717 15 6 1.6861 -2.9815 -7.3327 16 7 2.6726 -2.6856 -8.1507 17 14 0.7793 -4.6049 -7.5119 18 1 -0.2815 -4.6961 -6.4768 19 1 0.1623 -4.6810 -8.8605 20 1 1.7360 -5.7277 -7.3412 21 6 1.6198 2.4300 1.2406 22 6 1.9645 3.9206 1.2410 23 6 3.4846 4.0925 1.2583 24 6 4.0871 3.4300 0.0177 25 6 3.7424 1.9395 0.0174 26 1 -0.3632 0.4779 0.9099 27 1 -0.3634 0.5491 -0.8687 28 1 -0.3634 -1.0268 -0.0410 29 1 1.9632 3.4661 -1.2993 30 1 0.5601 2.3730 -1.2295 31 1 2.7864 1.0009 -2.3486 32 1 2.3524 1.7273 -6.9030 33 1 0.9810 2.3537 -6.2010 34 1 1.5550 -0.5672 -4.1137 35 1 0.4003 0.2009 -5.2295 36 1 1.9534 -0.2089 -7.1187 37 1 3.1081 -0.9770 -6.0027 38 1 2.9290 -3.3102 -8.8472 39 1 0.5367 2.3072 1.2284 40 1 2.0283 1.9627 2.1366 41 1 1.5349 4.3927 2.1246 42 1 1.5562 4.3881 0.3449 43 1 3.8930 3.6250 2.1543 44 1 3.7302 5.1545 1.2582 45 1 5.1701 3.5521 0.0304 46 1 3.6787 3.8976 -0.8783 47 1 4.1507 1.4718 0.9134 48 1 4.1719 1.4673 -0.8662 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691546413.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:31 Heat of formation + Delta-G solvation = -92.389413 kcal Electronic energy + Delta-G solvation = -25138.366454 eV Core-core repulsion = 21737.914521 eV Total energy + Delta-G solvation = -3400.451934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.22191 -39.86977 -37.08225 -35.60392 -34.83120 -32.38606 -31.79622 -31.67246 -29.66892 -28.67706 -27.08077 -25.16497 -23.64777 -23.21392 -22.35890 -21.12523 -19.92029 -18.82468 -18.10986 -17.97707 -17.13301 -16.54977 -16.22847 -16.17049 -15.87870 -15.58645 -15.34884 -15.12711 -14.80415 -14.68236 -14.51036 -14.32096 -14.23163 -13.98616 -13.77707 -13.56593 -13.39107 -13.12164 -12.95216 -12.71117 -12.66192 -12.50956 -12.43585 -12.08329 -11.81117 -11.71843 -11.61932 -11.31110 -11.28697 -11.09629 -10.75462 -10.58263 -10.56309 -10.06463 -9.64366 -8.69265 -8.21518 -6.31521 0.65856 1.38056 1.39380 1.51260 1.55108 1.62316 2.14383 2.39796 3.12132 3.39141 3.52196 3.76156 3.82272 3.82826 4.06523 4.12748 4.16295 4.18983 4.25826 4.26827 4.27931 4.37627 4.50496 4.54697 4.59658 4.61710 4.67653 4.84076 4.85395 4.90957 5.01758 5.06349 5.08851 5.18350 5.20369 5.31602 5.33069 5.41742 5.46840 5.53816 5.65955 5.80834 6.06765 6.21691 6.47655 6.51681 6.83731 7.22310 7.37392 8.89487 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.003298 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.738208 B = 8487.142629 C = 9299.443273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 S -0.279 6.279 3 C -0.022 4.022 4 C 0.129 3.871 5 N -0.710 5.710 6 C 0.528 3.472 7 O -0.573 6.573 8 C 0.081 3.919 9 H 0.106 0.894 10 N -0.828 5.828 11 C -0.118 4.118 12 C 0.031 3.969 13 C -0.543 4.543 14 H 0.053 0.947 15 C 0.005 3.995 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.277 1.277 21 C -0.102 4.102 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.116 4.116 25 C -0.094 4.094 26 H 0.095 0.905 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.411 0.589 32 H 0.352 0.648 33 H 0.343 0.657 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.003 0.997 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.939 11.604 22.748 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.285 4.285 2 S -0.049 6.049 3 C -0.132 4.132 4 C 0.003 3.997 5 N -0.363 5.363 6 C 0.315 3.685 7 O -0.452 6.452 8 C -0.034 4.034 9 H 0.124 0.876 10 N -0.360 5.360 11 C -0.158 4.158 12 C -0.006 4.006 13 C -0.581 4.581 14 H 0.071 0.929 15 C -0.193 4.193 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.203 1.203 21 C -0.141 4.141 22 C -0.159 4.159 23 C -0.154 4.154 24 C -0.155 4.155 25 C -0.133 4.133 26 H 0.114 0.886 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.248 0.752 32 H 0.167 0.833 33 H 0.156 0.844 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.021 0.979 37 H 0.020 0.980 38 H 0.073 0.927 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.091 0.909 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.565 11.782 22.902 25.803 hybrid contribution -1.558 -1.256 -0.999 2.237 sum 0.007 10.526 21.903 24.301 Atomic orbital electron populations 1.23441 0.92948 1.06883 1.05270 1.87038 1.09143 1.11212 1.97513 1.23032 1.00530 0.92277 0.97364 1.21584 0.98190 0.96666 0.83214 1.45962 1.46575 1.38779 1.05028 1.20644 0.80514 0.82379 0.84989 1.90613 1.35274 1.32348 1.86962 1.21380 1.01342 0.90942 0.89732 0.87620 1.58758 1.22354 1.49423 1.05431 1.22098 0.98565 0.94766 1.00373 1.18962 0.95102 0.93782 0.92782 1.21631 1.17561 1.03669 1.15218 0.92851 1.25857 0.95939 1.02060 0.95443 1.70072 1.29541 1.37732 1.19271 0.85500 0.78691 0.79402 0.78072 1.19049 1.20486 1.20251 1.21823 1.00504 0.96317 0.95487 1.21633 0.96831 0.94798 1.02657 1.21539 0.94849 1.01049 0.97961 1.21597 1.01501 0.93633 0.98818 1.21410 0.90449 0.98073 1.03353 0.88585 0.91555 0.87786 0.89941 0.92659 0.75180 0.83283 0.84371 0.91851 0.93852 0.97882 0.98047 0.92741 0.91480 0.89410 0.90061 0.92455 0.90862 0.91046 0.90371 0.92609 0.89852 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 9.87 113.37 1.12 -1.02 16 2 S -0.28 -5.78 20.28 -56.49 -1.15 -6.92 16 3 C -0.02 -0.37 0.42 -10.79 0.00 -0.38 16 4 C 0.13 2.81 3.62 86.38 0.31 3.12 16 5 N -0.71 -18.33 4.95 -463.05 -2.29 -20.62 16 6 C 0.53 17.42 7.08 87.66 0.62 18.04 16 7 O -0.57 -22.26 16.25 -3.04 -0.05 -22.31 16 8 C 0.08 2.80 3.21 44.17 0.14 2.95 16 9 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 10 N -0.83 -29.11 8.93 -171.81 -1.54 -30.65 16 11 C -0.12 -4.73 4.78 30.60 0.15 -4.59 16 12 C 0.03 1.54 4.74 29.85 0.14 1.68 16 13 C -0.54 -30.22 9.11 25.60 0.23 -29.99 16 14 H 0.05 2.92 7.74 -2.91 -0.02 2.89 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -54.72 13.29 21.45 0.28 -54.43 16 17 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 21 C -0.10 -1.33 4.57 30.59 0.14 -1.19 16 22 C -0.12 -1.38 5.65 30.59 0.17 -1.21 16 23 C -0.12 -1.25 5.92 30.59 0.18 -1.06 16 24 C -0.12 -1.57 5.65 30.59 0.17 -1.39 16 25 C -0.09 -1.44 4.61 30.59 0.14 -1.30 16 26 H 0.10 1.35 7.10 -2.39 -0.02 1.33 16 27 H 0.07 1.39 7.02 -2.39 -0.02 1.38 16 28 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 1.82 4.83 -2.39 -0.01 1.81 16 30 H 0.06 1.34 6.89 -2.39 -0.02 1.33 16 31 H 0.41 9.92 6.87 -92.71 -0.64 9.29 16 32 H 0.35 12.53 7.55 -89.69 -0.68 11.85 16 33 H 0.34 12.30 8.58 -89.69 -0.77 11.53 16 34 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.00 0.15 6.87 -2.38 -0.02 0.14 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.26 14.67 8.31 -92.70 -0.77 13.90 16 39 H 0.07 0.87 6.71 -2.38 -0.02 0.85 16 40 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 41 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.06 0.79 6.54 -2.38 -0.02 0.78 16 43 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.06 0.92 6.33 -2.38 -0.02 0.90 16 47 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.06 1.11 7.07 -2.39 -0.02 1.09 16 Total: -1.00 -65.54 377.20 0.16 -65.38 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -1.11 Total: 39.24 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 3.98 Total: -15.57 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.54 Total: -105.70 kcal Atomic # 8 Polarization: -22.26 SS G_CDS: -0.05 Total: -22.31 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -5.78 SS G_CDS: -1.15 Total: -6.92 kcal Total: -65.54 0.16 -65.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691546413.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.007 kcal (2) G-P(sol) polarization free energy of solvation -65.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds