Wall clock time and date at job start Fri Apr 10 2020 23:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81407 * 102.99645 * 2 1 4 4 H 1.09000 * 110.67426 * 56.78663 * 3 2 1 5 5 C 1.54894 * 110.75787 * 293.54508 * 3 2 1 6 6 C 1.54261 * 104.19398 * 203.74805 * 5 3 2 7 7 C 1.53875 * 106.60175 * 23.60864 * 6 5 3 8 8 H 1.09002 * 110.03441 * 240.66539 * 7 6 5 9 9 N 1.46898 * 110.02883 * 119.28584 * 7 6 5 10 10 C 1.46906 * 110.99888 * 185.40725 * 9 7 6 11 11 C 1.46902 * 111.00283 * 61.45764 * 9 7 6 12 12 C 1.53000 * 109.47107 * 190.00142 * 11 9 7 13 13 C 1.50709 * 109.46977 * 179.97438 * 12 11 9 14 14 O 1.21276 * 119.99555 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99716 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00350 * 0.02562 * 15 13 12 17 17 C 1.46506 * 119.99818 * 179.97438 * 15 13 12 18 18 C 1.50705 * 109.46902 * 90.00206 * 17 15 13 19 19 H 1.08004 * 119.99640 * 0.02562 * 18 17 15 20 20 C 1.37872 * 120.00125 * 180.02562 * 18 17 15 21 21 N 1.31509 * 120.00368 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99847 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46721 * 90.00366 * 22 20 18 24 24 H 1.48496 * 109.47009 * 210.00188 * 22 20 18 25 25 H 1.48500 * 109.47160 * 330.00524 * 22 20 18 26 26 C 1.54266 * 106.59934 * 0.02562 * 7 6 5 27 27 H 1.08999 * 109.47095 * 59.99605 * 1 2 3 28 28 H 1.08993 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46866 * 299.99883 * 1 2 3 30 30 H 1.08998 * 110.48038 * 85.06316 * 5 3 2 31 31 H 1.09006 * 110.59675 * 322.48121 * 5 3 2 32 32 H 1.09005 * 110.03255 * 264.32158 * 6 5 3 33 33 H 1.09005 * 110.07435 * 142.91896 * 6 5 3 34 34 H 1.09001 * 109.46544 * 60.00058 * 10 9 7 35 35 H 1.09001 * 109.47272 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47033 * 300.00113 * 10 9 7 37 37 H 1.09001 * 109.46557 * 309.99495 * 11 9 7 38 38 H 1.08994 * 109.47575 * 69.99497 * 11 9 7 39 39 H 1.09001 * 109.46884 * 299.99153 * 12 11 9 40 40 H 1.09001 * 109.47688 * 59.99882 * 12 11 9 41 41 H 1.09000 * 109.47160 * 89.99703 * 16 15 13 42 42 H 1.09002 * 109.47361 * 209.99659 * 16 15 13 43 43 H 1.09000 * 109.46956 * 329.99892 * 16 15 13 44 44 H 1.08999 * 109.47024 * 209.99823 * 17 15 13 45 45 H 1.08997 * 109.46807 * 330.00448 * 17 15 13 46 46 H 0.96997 * 120.00566 * 179.97438 * 21 20 18 47 47 H 1.09001 * 110.48765 * 95.06450 * 26 7 6 48 48 H 1.08997 * 110.48512 * 217.71344 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7643 2.2682 0.8532 5 6 1.7817 2.4326 -1.3278 6 6 2.6889 3.6745 -1.4479 7 6 3.9446 3.3846 -0.6072 8 1 4.0391 4.1224 0.1896 9 7 5.1393 3.4115 -1.4615 10 6 6.3350 3.0118 -0.7073 11 6 5.3203 4.7353 -2.0721 12 6 6.4149 4.6598 -3.1384 13 6 6.6001 6.0178 -3.7652 14 8 5.9229 6.9536 -3.3957 15 7 7.5182 6.1922 -4.7363 16 6 8.3358 5.0616 -5.1830 17 6 7.6978 7.5121 -5.3460 18 6 8.7362 8.2849 -4.5741 19 1 9.2147 7.8373 -3.7156 20 6 9.0753 9.5631 -4.9640 21 7 9.9818 10.2373 -4.2907 22 14 8.2481 10.3369 -6.4495 23 1 7.0264 11.0606 -6.0146 24 1 9.1845 11.2907 -7.0965 25 1 7.8757 9.2746 -7.4180 26 6 3.7571 1.9764 -0.0060 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7340 2.7288 -1.2769 31 1 1.9460 1.7575 -2.1677 32 1 2.1734 4.5525 -1.0586 33 1 2.9661 3.8361 -2.4896 34 1 6.2016 2.0000 -0.3246 35 1 7.2048 3.0400 -1.3636 36 1 6.4854 3.6985 0.1258 37 1 4.3853 5.0536 -2.5331 38 1 5.6096 5.4530 -1.3045 39 1 7.3499 4.3416 -2.6773 40 1 6.1255 3.9421 -3.9061 41 1 7.8319 4.5504 -6.0033 42 1 9.3052 5.4261 -5.5228 43 1 8.4786 4.3670 -4.3551 44 1 8.0263 7.3937 -6.3786 45 1 6.7521 8.0536 -5.3253 46 1 10.2206 11.1364 -4.5652 47 1 4.2421 1.2269 -0.6314 48 1 4.1506 1.9397 1.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708304216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:54 Heat of formation + Delta-G solvation = -34.249184 kcal Electronic energy + Delta-G solvation = -24313.990726 eV Core-core repulsion = 20916.059942 eV Total energy + Delta-G solvation = -3397.930784 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.60858 -38.80664 -35.80864 -34.86887 -32.57961 -31.16382 -29.43229 -29.41524 -28.40567 -27.71446 -26.07356 -25.37469 -22.92478 -21.46897 -21.01276 -19.67581 -18.38127 -17.23043 -16.95718 -16.42778 -16.29940 -15.69980 -15.42090 -14.98097 -14.76256 -14.37173 -14.18884 -13.92871 -13.81554 -13.56136 -13.35850 -13.14158 -12.73703 -12.34812 -12.31335 -12.26406 -12.09385 -12.01558 -11.87189 -11.55950 -11.38694 -11.37467 -11.14699 -11.02646 -10.92320 -10.88373 -10.62291 -10.50615 -10.15534 -10.13509 -9.54283 -8.99163 -8.58985 -8.40936 -8.00241 -7.68757 -6.08726 -4.07388 1.35418 2.23757 3.29168 3.35117 3.36820 3.37590 3.59157 4.06151 4.10276 4.38338 4.39683 4.61461 4.75896 4.78351 4.95650 5.01167 5.05729 5.15879 5.18108 5.21063 5.24415 5.29882 5.32261 5.34825 5.43209 5.47220 5.55050 5.61808 5.72271 5.75240 5.83806 5.87192 5.89266 5.95428 6.00201 6.07010 6.15436 6.18830 6.70629 6.94241 6.98206 7.03192 7.35054 7.61412 8.26642 8.47284 8.92942 9.00185 9.51666 11.04667 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.030878 B = 0.002273 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.562777 B =12313.091098 C =12541.584748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.258 6.258 3 C -0.059 4.059 4 H 0.090 0.910 5 C -0.112 4.112 6 C -0.119 4.119 7 C 0.085 3.915 8 H 0.047 0.953 9 N -0.536 5.536 10 C 0.017 3.983 11 C 0.068 3.932 12 C -0.134 4.134 13 C 0.507 3.493 14 O -0.545 6.545 15 N -0.599 5.599 16 C 0.084 3.916 17 C 0.215 3.785 18 C -0.528 4.528 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.877 3.123 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.266 1.266 26 C -0.092 4.092 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.026 0.974 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.036 0.964 46 H 0.264 0.736 47 H 0.090 0.910 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.606 -21.354 7.028 27.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.030 6.030 3 C -0.188 4.188 4 H 0.109 0.891 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.024 4.024 8 H 0.065 0.935 9 N -0.260 5.260 10 C -0.131 4.131 11 C -0.060 4.060 12 C -0.174 4.174 13 C 0.293 3.707 14 O -0.423 6.423 15 N -0.331 5.331 16 C -0.060 4.060 17 C 0.094 3.906 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.537 5.537 22 Si 0.704 3.296 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.191 1.191 26 C -0.131 4.131 27 H 0.096 0.904 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.045 0.955 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.106 0.894 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.108 0.892 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.263 -21.924 6.856 27.580 hybrid contribution -0.865 2.133 -0.016 2.302 sum -16.129 -19.791 6.839 26.431 Atomic orbital electron populations 1.23362 0.94499 1.06301 1.04903 1.86866 1.07114 1.11135 1.97894 1.24172 1.00299 0.93046 1.01276 0.89126 1.22671 0.99056 0.97350 0.96100 1.22271 0.94461 0.97289 1.01817 1.22223 0.90610 0.95836 0.93771 0.93493 1.62171 1.02746 1.28292 1.32817 1.22479 0.93134 1.00444 0.97093 1.21864 0.99495 0.88211 0.96429 1.21634 1.00284 0.96153 0.99354 1.20351 0.80350 0.89962 0.79998 1.90659 1.46851 1.43249 1.61548 1.47843 1.36208 1.11389 1.37654 1.21659 0.96258 0.89000 0.99086 1.19657 0.97822 0.79862 0.93251 1.21330 1.21208 0.99518 1.14566 0.90849 1.24872 0.94770 0.96731 0.96765 1.69895 1.31821 1.11888 1.40051 0.86832 0.79747 0.79730 0.83265 1.19929 1.21076 1.19059 1.22265 0.92152 0.97285 1.01353 0.90418 0.88282 0.90674 0.91722 0.89976 0.91526 0.89744 0.91323 0.90918 0.95510 0.89716 0.93802 0.89400 0.88803 0.93613 0.90671 0.92085 0.95271 0.94593 0.92580 0.89168 0.91050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.71 10.63 101.05 1.07 0.36 16 2 S -0.26 -2.22 21.83 -107.50 -2.35 -4.56 16 3 C -0.06 -0.47 3.42 -24.72 -0.08 -0.55 16 4 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.11 -0.90 6.16 -25.07 -0.15 -1.05 16 6 C -0.12 -1.11 5.81 -25.62 -0.15 -1.26 16 7 C 0.09 0.84 2.67 -66.60 -0.18 0.67 16 8 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 9 N -0.54 -5.98 4.53 -233.53 -1.06 -7.04 16 10 C 0.02 0.17 9.07 60.07 0.54 0.71 16 11 C 0.07 0.93 4.01 -3.82 -0.02 0.92 16 12 C -0.13 -1.92 4.18 -27.88 -0.12 -2.04 16 13 C 0.51 10.23 7.67 -10.98 -0.08 10.15 16 14 O -0.55 -13.31 15.56 5.56 0.09 -13.22 16 15 N -0.60 -12.38 2.86 -182.95 -0.52 -12.90 16 16 C 0.08 1.28 10.24 59.85 0.61 1.90 16 17 C 0.21 5.31 4.23 -5.19 -0.02 5.28 16 18 C -0.53 -15.29 9.94 -34.44 -0.34 -15.63 16 19 H 0.07 2.33 8.06 -52.48 -0.42 1.91 16 20 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 21 N -0.90 -27.84 13.96 55.43 0.77 -27.07 16 22 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 23 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 26 C -0.09 -0.79 4.65 -25.06 -0.12 -0.91 16 27 H 0.08 0.42 8.14 -51.92 -0.42 -0.01 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.71 8.05 -51.93 -0.42 0.30 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.89 6.56 -51.93 -0.34 0.55 16 34 H 0.07 0.60 6.75 -51.93 -0.35 0.25 16 35 H 0.07 0.72 6.30 -51.93 -0.33 0.39 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 1.22 6.15 -51.93 -0.32 0.90 16 38 H 0.04 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.09 1.16 5.73 -51.93 -0.30 0.86 16 40 H 0.09 1.18 8.11 -51.93 -0.42 0.76 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 1.20 8.07 -51.93 -0.42 0.78 16 43 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 44 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 45 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 46 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 47 H 0.09 0.87 7.46 -51.93 -0.39 0.48 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -33.72 384.57 -9.65 -43.37 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.58 Total: -1.93 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 0.87 Total: 0.52 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.81 Total: -47.02 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: 0.09 Total: -13.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: -2.22 SS G_CDS: -2.35 Total: -4.56 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.72 -9.65 -43.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708304216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.120 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds