Wall clock time and date at job start Fri Apr 10 2020 23:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81406 * 1 3 3 C 1.81407 * 102.99645 * 2 1 4 4 H 1.09000 * 110.67426 * 56.78663 * 3 2 1 5 5 C 1.54894 * 110.75787 * 293.54508 * 3 2 1 6 6 C 1.54261 * 104.19398 * 203.74805 * 5 3 2 7 7 C 1.53875 * 106.60175 * 23.60864 * 6 5 3 8 8 H 1.09002 * 110.03441 * 240.66539 * 7 6 5 9 9 N 1.46898 * 110.02883 * 119.28584 * 7 6 5 10 10 C 1.46906 * 110.99888 * 185.40725 * 9 7 6 11 11 C 1.46902 * 111.00283 * 61.45764 * 9 7 6 12 12 C 1.53000 * 109.47107 * 190.00142 * 11 9 7 13 13 C 1.50709 * 109.46977 * 179.97438 * 12 11 9 14 14 O 1.21276 * 119.99555 * 359.97438 * 13 12 11 15 15 N 1.34772 * 119.99716 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00350 * 0.02562 * 15 13 12 17 17 C 1.46506 * 119.99818 * 179.97438 * 15 13 12 18 18 C 1.50705 * 109.46902 * 90.00206 * 17 15 13 19 19 H 1.08004 * 119.99640 * 0.02562 * 18 17 15 20 20 C 1.37872 * 120.00125 * 180.02562 * 18 17 15 21 21 N 1.31509 * 120.00368 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 119.99847 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46721 * 90.00366 * 22 20 18 24 24 H 1.48496 * 109.47009 * 210.00188 * 22 20 18 25 25 H 1.48500 * 109.47160 * 330.00524 * 22 20 18 26 26 C 1.54266 * 106.59934 * 0.02562 * 7 6 5 27 27 H 1.08999 * 109.47095 * 59.99605 * 1 2 3 28 28 H 1.08993 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46866 * 299.99883 * 1 2 3 30 30 H 1.08998 * 110.48038 * 85.06316 * 5 3 2 31 31 H 1.09006 * 110.59675 * 322.48121 * 5 3 2 32 32 H 1.09005 * 110.03255 * 264.32158 * 6 5 3 33 33 H 1.09005 * 110.07435 * 142.91896 * 6 5 3 34 34 H 1.09001 * 109.46544 * 60.00058 * 10 9 7 35 35 H 1.09001 * 109.47272 * 179.97438 * 10 9 7 36 36 H 1.09000 * 109.47033 * 300.00113 * 10 9 7 37 37 H 1.09001 * 109.46557 * 309.99495 * 11 9 7 38 38 H 1.08994 * 109.47575 * 69.99497 * 11 9 7 39 39 H 1.09001 * 109.46884 * 299.99153 * 12 11 9 40 40 H 1.09001 * 109.47688 * 59.99882 * 12 11 9 41 41 H 1.09000 * 109.47160 * 89.99703 * 16 15 13 42 42 H 1.09002 * 109.47361 * 209.99659 * 16 15 13 43 43 H 1.09000 * 109.46956 * 329.99892 * 16 15 13 44 44 H 1.08999 * 109.47024 * 209.99823 * 17 15 13 45 45 H 1.08997 * 109.46807 * 330.00448 * 17 15 13 46 46 H 0.96997 * 120.00566 * 179.97438 * 21 20 18 47 47 H 1.09001 * 110.48765 * 95.06450 * 26 7 6 48 48 H 1.08997 * 110.48512 * 217.71344 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 1 1.7643 2.2682 0.8532 5 6 1.7817 2.4326 -1.3278 6 6 2.6889 3.6745 -1.4479 7 6 3.9446 3.3846 -0.6072 8 1 4.0391 4.1224 0.1896 9 7 5.1393 3.4115 -1.4615 10 6 6.3350 3.0118 -0.7073 11 6 5.3203 4.7353 -2.0721 12 6 6.4149 4.6598 -3.1384 13 6 6.6001 6.0178 -3.7652 14 8 5.9229 6.9536 -3.3957 15 7 7.5182 6.1922 -4.7363 16 6 8.3358 5.0616 -5.1830 17 6 7.6978 7.5121 -5.3460 18 6 8.7362 8.2849 -4.5741 19 1 9.2147 7.8373 -3.7156 20 6 9.0753 9.5631 -4.9640 21 7 9.9818 10.2373 -4.2907 22 14 8.2481 10.3369 -6.4495 23 1 7.0264 11.0606 -6.0146 24 1 9.1845 11.2907 -7.0965 25 1 7.8757 9.2746 -7.4180 26 6 3.7571 1.9764 -0.0060 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.7340 2.7288 -1.2769 31 1 1.9460 1.7575 -2.1677 32 1 2.1734 4.5525 -1.0586 33 1 2.9661 3.8361 -2.4896 34 1 6.2016 2.0000 -0.3246 35 1 7.2048 3.0400 -1.3636 36 1 6.4854 3.6985 0.1258 37 1 4.3853 5.0536 -2.5331 38 1 5.6096 5.4530 -1.3045 39 1 7.3499 4.3416 -2.6773 40 1 6.1255 3.9421 -3.9061 41 1 7.8319 4.5504 -6.0033 42 1 9.3052 5.4261 -5.5228 43 1 8.4786 4.3670 -4.3551 44 1 8.0263 7.3937 -6.3786 45 1 6.7521 8.0536 -5.3253 46 1 10.2206 11.1364 -4.5652 47 1 4.2421 1.2269 -0.6314 48 1 4.1506 1.9397 1.0098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708304216.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:03:53 Heat of formation + Delta-G solvation = -56.177744 kcal Electronic energy + Delta-G solvation = -24314.941620 eV Core-core repulsion = 20916.059942 eV Total energy + Delta-G solvation = -3398.881678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87944 -39.95043 -36.84644 -36.44731 -34.71446 -32.42266 -30.47234 -30.04307 -29.78154 -28.48083 -27.39898 -26.58414 -24.53163 -22.74693 -21.78156 -20.52067 -19.90536 -19.15741 -18.19331 -17.64270 -17.16292 -16.98021 -16.80083 -16.10755 -16.08410 -15.66030 -15.22120 -14.83447 -14.66000 -14.48678 -14.40508 -14.16033 -13.96894 -13.91160 -13.64902 -13.62569 -13.29422 -12.94838 -12.91992 -12.84446 -12.74313 -12.43359 -12.34390 -12.06158 -12.04281 -11.92758 -11.81988 -11.75786 -11.66082 -11.59798 -10.84316 -10.75956 -10.65588 -9.39366 -9.34753 -8.64429 -8.35061 -6.40214 0.77208 1.32115 1.36121 1.44871 1.67980 1.80810 2.27807 2.30378 2.93180 2.99397 3.40711 3.65887 3.82716 3.94336 3.97085 4.11538 4.26965 4.34504 4.35751 4.37715 4.40062 4.46280 4.48043 4.54664 4.59553 4.64205 4.67784 4.71585 4.82859 4.84255 4.89963 4.92783 4.96356 4.99819 5.01073 5.07020 5.07775 5.16849 5.18732 5.28858 5.45081 5.62135 6.01184 6.14475 6.22889 6.60797 6.70766 7.20503 7.42513 8.81843 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.030878 B = 0.002273 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.562777 B =12313.091098 C =12541.584748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 S -0.299 6.299 3 C -0.050 4.050 4 H 0.098 0.902 5 C -0.104 4.104 6 C -0.119 4.119 7 C 0.082 3.918 8 H 0.039 0.961 9 N -0.530 5.530 10 C 0.014 3.986 11 C 0.076 3.924 12 C -0.116 4.116 13 C 0.496 3.504 14 O -0.598 6.598 15 N -0.609 5.609 16 C 0.077 3.923 17 C 0.222 3.778 18 C -0.536 4.536 19 H 0.027 0.973 20 C 0.008 3.992 21 N -0.945 5.945 22 Si 0.950 3.050 23 H -0.277 1.277 24 H -0.274 1.274 25 H -0.237 1.237 26 C -0.084 4.084 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.019 0.981 37 H 0.076 0.924 38 H 0.015 0.985 39 H 0.106 0.894 40 H 0.124 0.876 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.018 0.982 46 H 0.268 0.732 47 H 0.083 0.917 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.996 -23.455 5.809 29.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 S -0.070 6.070 3 C -0.179 4.179 4 H 0.116 0.884 5 C -0.143 4.143 6 C -0.158 4.158 7 C -0.027 4.027 8 H 0.057 0.943 9 N -0.254 5.254 10 C -0.134 4.134 11 C -0.052 4.052 12 C -0.156 4.156 13 C 0.285 3.715 14 O -0.480 6.480 15 N -0.340 5.340 16 C -0.065 4.065 17 C 0.100 3.900 18 C -0.574 4.574 19 H 0.045 0.955 20 C -0.190 4.190 21 N -0.586 5.586 22 Si 0.772 3.228 23 H -0.202 1.202 24 H -0.200 1.200 25 H -0.160 1.160 26 C -0.123 4.123 27 H 0.103 0.897 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.094 0.906 38 H 0.034 0.966 39 H 0.124 0.876 40 H 0.142 0.858 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.036 0.964 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.635 -24.093 5.630 29.814 hybrid contribution -0.410 2.732 0.470 2.802 sum -17.045 -21.361 6.100 28.000 Atomic orbital electron populations 1.23413 0.91742 1.07240 1.05704 1.86999 1.10252 1.11810 1.97986 1.24098 0.99707 0.92601 1.01468 0.88410 1.22600 0.99474 0.96374 0.95898 1.22252 0.94566 0.98104 1.00895 1.22297 0.90316 0.96592 0.93525 0.94275 1.62208 1.03644 1.26106 1.33453 1.22565 0.92784 1.01157 0.96888 1.21683 0.98850 0.89005 0.95682 1.21570 1.01344 0.92851 0.99862 1.21377 0.79256 0.91589 0.79258 1.90626 1.48843 1.45500 1.63027 1.47988 1.37007 1.11261 1.37738 1.21976 0.95344 0.87756 1.01397 1.19337 0.95288 0.81623 0.93802 1.21562 1.21935 1.00291 1.13645 0.95457 1.25893 0.95371 0.97297 1.00420 1.70049 1.33646 1.12542 1.42324 0.85684 0.78279 0.79336 0.79456 1.20236 1.19954 1.16028 1.22179 0.92830 0.95916 1.01353 0.89725 0.87304 0.89747 0.90384 0.90534 0.91464 0.90934 0.89600 0.90441 0.96249 0.90565 0.96625 0.87624 0.85794 0.90126 0.91704 0.89179 0.93156 0.96390 0.92273 0.89809 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.63 113.37 1.21 0.14 16 2 S -0.30 -4.66 21.83 -56.49 -1.23 -5.89 16 3 C -0.05 -0.71 3.42 31.90 0.11 -0.60 16 4 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 5 C -0.10 -1.49 6.16 31.67 0.20 -1.30 16 6 C -0.12 -2.12 5.81 31.32 0.18 -1.94 16 7 C 0.08 1.56 2.67 45.64 0.12 1.68 16 8 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 9 N -0.53 -11.23 4.53 -892.77 -4.04 -15.27 16 10 C 0.01 0.26 9.07 127.69 1.16 1.42 16 11 C 0.08 2.08 4.01 86.30 0.35 2.43 16 12 C -0.12 -3.16 4.18 29.85 0.12 -3.03 16 13 C 0.50 19.96 7.67 87.66 0.67 20.63 16 14 O -0.60 -30.10 15.56 -3.02 -0.05 -30.15 16 15 N -0.61 -24.68 2.86 -851.12 -2.43 -27.11 16 16 C 0.08 2.16 10.24 127.77 1.31 3.47 16 17 C 0.22 10.92 4.23 85.63 0.36 11.28 16 18 C -0.54 -31.89 9.94 25.60 0.25 -31.64 16 19 H 0.03 1.81 8.06 -2.91 -0.02 1.79 16 20 C 0.01 0.48 5.47 84.65 0.46 0.94 16 21 N -0.95 -60.29 13.96 21.44 0.30 -59.99 16 22 Si 0.95 44.81 27.47 68.60 1.88 46.69 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 26 C -0.08 -1.33 4.65 31.68 0.15 -1.18 16 27 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.08 1.21 8.05 -2.38 -0.02 1.19 16 32 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.07 1.48 6.56 -2.38 -0.02 1.47 16 34 H 0.09 1.32 6.75 -2.39 -0.02 1.30 16 35 H 0.08 1.37 6.30 -2.39 -0.02 1.35 16 36 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 2.21 6.15 -2.39 -0.01 2.20 16 38 H 0.02 0.51 8.08 -2.39 -0.02 0.49 16 39 H 0.11 2.53 5.73 -2.39 -0.01 2.52 16 40 H 0.12 2.68 8.11 -2.39 -0.02 2.66 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.96 8.07 -2.39 -0.02 1.94 16 43 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 44 H 0.05 2.26 7.13 -2.39 -0.02 2.24 16 45 H 0.02 0.95 6.85 -2.39 -0.02 0.93 16 46 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 47 H 0.08 1.47 7.46 -2.39 -0.02 1.46 16 48 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -76.79 384.57 1.94 -74.85 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.86 Total: 14.59 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: 6.65 Total: 2.28 kcal Atomic # 7 Polarization: -96.20 SS G_CDS: -6.17 Total: -102.38 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.05 Total: -30.15 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.69 kcal Atomic # 16 Polarization: -4.66 SS G_CDS: -1.23 Total: -5.89 kcal Total: -76.79 1.94 -74.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708304216.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.672 kcal (2) G-P(sol) polarization free energy of solvation -76.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds