Wall clock time and date at job start Fri Apr 10 2020 23:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.53007 * 109.46822 * 240.00179 * 2 1 3 5 5 C 1.50704 * 109.46738 * 59.99915 * 4 2 1 6 6 H 1.07994 * 120.00145 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99242 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99507 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00332 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46913 * 90.00483 * 9 7 5 11 11 H 1.48498 * 109.47106 * 210.00437 * 9 7 5 12 12 H 1.48501 * 109.47434 * 330.00278 * 9 7 5 13 13 C 1.53000 * 109.47638 * 120.00262 * 2 1 3 14 14 N 1.46903 * 109.46905 * 300.00062 * 13 2 1 15 15 C 1.46897 * 110.99778 * 179.97438 * 14 13 2 16 16 C 1.50704 * 109.47003 * 180.02562 * 15 14 13 17 17 N 1.30684 * 125.84767 * 275.02246 * 16 15 14 18 18 C 1.33975 * 109.77574 * 179.73755 * 17 16 15 19 19 C 1.48413 * 125.64458 * 179.97438 * 18 17 16 20 20 C 1.39328 * 120.12377 * 359.71715 * 19 18 17 21 21 C 1.38020 * 119.87871 * 179.75127 * 20 19 18 22 22 C 1.38327 * 120.11820 * 0.55153 * 21 20 19 23 23 C 1.38318 * 120.24384 * 359.70048 * 22 21 20 24 24 C 1.38025 * 120.11746 * 0.02562 * 23 22 21 25 25 N 1.31492 * 108.70188 * 359.97438 * 18 17 16 26 26 N 1.34519 * 125.85626 * 94.71140 * 16 15 14 27 27 H 0.96996 * 126.74176 * 0.22461 * 26 16 15 28 28 H 1.09006 * 109.46841 * 299.99529 * 1 2 3 29 29 H 1.08998 * 109.47311 * 59.99630 * 1 2 3 30 30 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47511 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47306 * 300.00575 * 3 2 1 33 33 H 1.08998 * 109.47303 * 60.00092 * 3 2 1 34 34 H 1.08993 * 109.46867 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47041 * 300.00264 * 4 2 1 36 36 H 0.96994 * 119.99562 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47333 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.46756 * 59.99410 * 13 2 1 39 39 H 1.00896 * 111.00166 * 56.04451 * 14 13 2 40 40 H 1.08993 * 109.47257 * 59.99591 * 15 14 13 41 41 H 1.09001 * 109.47236 * 299.99225 * 15 14 13 42 42 H 1.08003 * 120.05582 * 0.02569 * 20 19 18 43 43 H 1.07996 * 119.94327 * 180.27940 * 21 20 19 44 44 H 1.08000 * 119.87762 * 179.72439 * 22 21 20 45 45 H 1.07992 * 119.94333 * 180.02562 * 23 22 21 46 46 H 1.08004 * 120.05496 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5375 -0.0107 -2.4797 6 1 0.9163 0.8671 -2.3805 7 6 1.8701 -0.4821 -3.7320 8 7 1.4313 0.1376 -4.8059 9 14 2.9440 -2.0009 -3.9035 10 1 2.0854 -3.2117 -3.9484 11 1 3.7355 -1.9086 -5.1566 12 1 3.8649 -2.0898 -2.7419 13 6 2.0401 -0.7213 1.2492 14 7 1.5505 -0.0288 2.4487 15 6 2.0211 -0.6953 3.6702 16 6 1.4995 0.0412 4.8771 17 7 2.0533 1.0852 5.4350 18 6 1.3180 1.4833 6.4818 19 6 1.6248 2.6350 7.3662 20 6 2.7649 3.4040 7.1427 21 6 3.0426 4.4771 7.9652 22 6 2.1974 4.7826 9.0167 23 6 1.0669 4.0194 9.2463 24 6 0.7767 2.9475 8.4265 25 7 0.2797 0.6847 6.5958 26 7 0.3810 -0.2596 5.5612 27 1 -0.2349 -0.9856 5.3758 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7217 -1.2491 35 1 1.6765 -1.7489 -1.2494 36 1 1.6655 -0.1938 -5.6868 37 1 3.1301 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2491 39 1 0.5440 0.0412 2.4402 40 1 3.1109 -0.6956 3.6871 41 1 1.6572 -1.7227 3.6868 42 1 3.4278 3.1635 6.3247 43 1 3.9236 5.0766 7.7901 44 1 2.4208 5.6204 9.6605 45 1 0.4102 4.2625 10.0684 46 1 -0.1065 2.3525 8.6065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000774813444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:45 Heat of formation + Delta-G solvation = 99.136532 kcal Electronic energy + Delta-G solvation = -24798.138668 eV Core-core repulsion = 21302.840722 eV Total energy + Delta-G solvation = -3495.297946 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.32239 -39.20008 -37.93389 -34.98010 -33.32231 -32.38756 -31.82509 -31.10906 -30.22776 -27.92946 -26.79002 -26.41742 -24.53459 -24.10431 -22.77324 -21.90778 -21.19010 -20.64459 -18.40189 -17.78163 -17.05221 -16.83173 -16.02698 -15.81564 -15.71263 -15.00634 -14.68862 -14.43690 -14.07352 -13.87648 -13.64837 -13.45821 -13.19979 -13.13785 -12.92818 -12.62491 -12.22612 -11.99403 -11.95875 -11.63137 -11.35592 -11.12192 -11.02595 -10.88576 -10.71832 -10.53701 -10.40815 -10.24369 -10.03910 -9.86341 -9.71068 -9.36509 -9.19923 -8.95205 -8.77834 -8.51835 -8.41574 -6.01824 -3.98332 0.61448 1.15760 1.50844 2.31801 2.72995 3.29831 3.38294 3.40891 3.55617 3.69349 4.21401 4.24773 4.46073 4.54208 4.71724 4.73770 4.86526 5.04882 5.18948 5.28363 5.30799 5.36188 5.50313 5.53960 5.55739 5.78774 5.79351 5.89171 6.00149 6.02159 6.15253 6.22599 6.27496 6.30690 6.32821 6.54881 6.59536 6.67472 6.74969 6.77464 6.94518 7.05302 7.11520 7.19158 7.25898 7.33592 7.45299 7.82504 7.84889 8.57398 9.04069 9.60834 11.11232 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.025692 B = 0.002199 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.579945 B =12731.136577 C =13151.315230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.048 4.048 3 C -0.119 4.119 4 C -0.004 4.004 5 C -0.508 4.508 6 H 0.078 0.922 7 C 0.064 3.936 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.068 3.932 14 N -0.675 5.675 15 C 0.134 3.866 16 C 0.300 3.700 17 N -0.510 5.510 18 C 0.265 3.735 19 C -0.013 4.013 20 C -0.074 4.074 21 C -0.125 4.125 22 C -0.107 4.107 23 C -0.127 4.127 24 C -0.086 4.086 25 N -0.307 5.307 26 N -0.480 5.480 27 H 0.441 0.559 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.016 0.984 35 H 0.008 0.992 36 H 0.262 0.738 37 H 0.073 0.927 38 H 0.028 0.972 39 H 0.341 0.659 40 H 0.111 0.889 41 H 0.053 0.947 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.124 0.876 45 H 0.126 0.874 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 2.182 27.538 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.048 4.048 3 C -0.176 4.176 4 C -0.042 4.042 5 C -0.546 4.546 6 H 0.096 0.904 7 C -0.137 4.137 8 N -0.544 5.544 9 Si 0.704 3.296 10 H -0.206 1.206 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.060 4.060 14 N -0.308 5.308 15 C 0.002 3.998 16 C 0.020 3.980 17 N -0.238 5.238 18 C -0.014 4.014 19 C -0.016 4.016 20 C -0.094 4.094 21 C -0.143 4.143 22 C -0.126 4.126 23 C -0.145 4.145 24 C -0.106 4.106 25 N -0.136 5.136 26 N -0.199 5.199 27 H 0.286 0.714 28 H 0.052 0.948 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.034 0.966 35 H 0.026 0.974 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.046 0.954 39 H 0.161 0.839 40 H 0.129 0.871 41 H 0.070 0.930 42 H 0.156 0.844 43 H 0.146 0.854 44 H 0.142 0.858 45 H 0.144 0.856 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.468 2.860 27.771 27.922 hybrid contribution -0.465 -2.317 -0.589 2.435 sum 0.003 0.543 27.182 27.187 Atomic orbital electron populations 1.21804 0.95647 1.00433 1.01052 1.20428 0.95027 0.96363 0.93025 1.21622 0.99871 0.95295 1.00823 1.19631 0.96145 0.95184 0.93207 1.21122 1.31549 1.13243 0.88651 0.90416 1.25034 0.95809 0.96795 0.96043 1.69911 1.46064 1.40599 0.97839 0.86837 0.81276 0.83894 0.77579 1.20565 1.21543 1.19091 1.22218 1.00336 0.94640 0.88785 1.60477 1.16645 1.53567 1.00122 1.20460 1.02368 0.92850 0.84096 1.24310 0.85406 0.93031 0.95217 1.70487 1.31373 1.12309 1.09649 1.22321 0.89735 0.95642 0.93729 1.17471 0.96737 0.92825 0.94570 1.21298 0.95620 0.93562 0.98901 1.21144 1.00151 0.97509 0.95505 1.21309 0.94562 0.99263 0.97456 1.21064 0.97854 0.95658 0.99899 1.21198 0.98816 0.97024 0.93582 1.78153 1.22581 1.03720 1.09148 1.48025 1.21811 1.26684 1.23372 0.71376 0.94767 0.90964 0.94086 0.93996 0.92072 0.93623 0.96554 0.97373 0.92868 0.90807 0.95379 0.83945 0.87089 0.92956 0.84446 0.85376 0.85796 0.85582 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 7.89 37.16 0.29 -2.01 16 2 C -0.05 -0.87 0.60 -154.51 -0.09 -0.97 16 3 C -0.12 -2.23 8.06 37.16 0.30 -1.93 16 4 C 0.00 -0.09 3.11 -27.88 -0.09 -0.17 16 5 C -0.51 -13.71 8.20 -34.44 -0.28 -13.99 16 6 H 0.08 2.25 5.92 -52.49 -0.31 1.94 16 7 C 0.06 1.81 5.47 -17.81 -0.10 1.72 16 8 N -0.90 -27.44 13.96 55.43 0.77 -26.67 16 9 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 13 C 0.07 1.00 4.65 -3.82 -0.02 0.98 16 14 N -0.67 -8.50 5.70 -115.06 -0.66 -9.16 16 15 C 0.13 1.36 6.31 -4.98 -0.03 1.32 16 16 C 0.30 3.47 7.73 -155.73 -1.20 2.27 16 17 N -0.51 -7.07 10.82 -8.56 -0.09 -7.16 16 18 C 0.27 3.56 7.78 -156.63 -1.22 2.34 16 19 C -0.01 -0.16 5.88 -104.89 -0.62 -0.77 16 20 C -0.07 -0.78 9.69 -39.26 -0.38 -1.16 16 21 C -0.13 -1.05 10.03 -39.63 -0.40 -1.44 16 22 C -0.11 -0.80 10.04 -39.52 -0.40 -1.20 16 23 C -0.13 -1.01 10.03 -39.63 -0.40 -1.40 16 24 C -0.09 -0.85 9.68 -39.25 -0.38 -1.23 16 25 N -0.31 -3.90 12.43 32.10 0.40 -3.50 16 26 N -0.48 -4.95 7.44 32.61 0.24 -4.70 16 27 H 0.44 2.99 8.96 -182.35 -1.63 1.36 16 28 H 0.03 0.51 6.57 -51.93 -0.34 0.17 16 29 H 0.07 1.46 6.62 -51.93 -0.34 1.11 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.29 6.62 -51.92 -0.34 0.94 16 33 H 0.04 0.79 7.60 -51.93 -0.39 0.40 16 34 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.34 4.17 6.76 -39.29 -0.27 3.90 16 40 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.14 1.48 7.84 -52.48 -0.41 1.07 16 43 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 45 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 46 H 0.13 1.21 7.83 -52.48 -0.41 0.80 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -32.41 374.57 -11.56 -43.97 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.20 Total: 2.55 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: -5.01 Total: -17.66 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: 0.67 Total: -51.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.41 -11.56 -43.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774813444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.110 kcal (2) G-P(sol) polarization free energy of solvation -32.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds