Wall clock time and date at job start Fri Apr 10 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47255 * 2 1 4 4 C 1.53007 * 109.46822 * 240.00179 * 2 1 3 5 5 C 1.50704 * 109.46738 * 59.99915 * 4 2 1 6 6 H 1.07994 * 120.00145 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99242 * 180.02562 * 5 4 2 8 8 N 1.31523 * 119.99507 * 179.97438 * 7 5 4 9 9 Si 1.86793 * 120.00332 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46913 * 90.00483 * 9 7 5 11 11 H 1.48498 * 109.47106 * 210.00437 * 9 7 5 12 12 H 1.48501 * 109.47434 * 330.00278 * 9 7 5 13 13 C 1.53000 * 109.47638 * 120.00262 * 2 1 3 14 14 N 1.46903 * 109.46905 * 300.00062 * 13 2 1 15 15 C 1.46897 * 110.99778 * 179.97438 * 14 13 2 16 16 C 1.50704 * 109.47003 * 180.02562 * 15 14 13 17 17 N 1.30684 * 125.84767 * 275.02246 * 16 15 14 18 18 C 1.33975 * 109.77574 * 179.73755 * 17 16 15 19 19 C 1.48413 * 125.64458 * 179.97438 * 18 17 16 20 20 C 1.39328 * 120.12377 * 359.71715 * 19 18 17 21 21 C 1.38020 * 119.87871 * 179.75127 * 20 19 18 22 22 C 1.38327 * 120.11820 * 0.55153 * 21 20 19 23 23 C 1.38318 * 120.24384 * 359.70048 * 22 21 20 24 24 C 1.38025 * 120.11746 * 0.02562 * 23 22 21 25 25 N 1.31492 * 108.70188 * 359.97438 * 18 17 16 26 26 N 1.34519 * 125.85626 * 94.71140 * 16 15 14 27 27 H 0.96996 * 126.74176 * 0.22461 * 26 16 15 28 28 H 1.09006 * 109.46841 * 299.99529 * 1 2 3 29 29 H 1.08998 * 109.47311 * 59.99630 * 1 2 3 30 30 H 1.09006 * 109.47158 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47511 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.47306 * 300.00575 * 3 2 1 33 33 H 1.08998 * 109.47303 * 60.00092 * 3 2 1 34 34 H 1.08993 * 109.46867 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47041 * 300.00264 * 4 2 1 36 36 H 0.96994 * 119.99562 * 179.97438 * 8 7 5 37 37 H 1.09000 * 109.47333 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.46756 * 59.99410 * 13 2 1 39 39 H 1.00896 * 111.00166 * 56.04451 * 14 13 2 40 40 H 1.08993 * 109.47257 * 59.99591 * 15 14 13 41 41 H 1.09001 * 109.47236 * 299.99225 * 15 14 13 42 42 H 1.08003 * 120.05582 * 0.02569 * 20 19 18 43 43 H 1.07996 * 119.94327 * 180.27940 * 21 20 19 44 44 H 1.08000 * 119.87762 * 179.72439 * 22 21 20 45 45 H 1.07992 * 119.94333 * 180.02562 * 23 22 21 46 46 H 1.08004 * 120.05496 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5375 -0.0107 -2.4797 6 1 0.9163 0.8671 -2.3805 7 6 1.8701 -0.4821 -3.7320 8 7 1.4313 0.1376 -4.8059 9 14 2.9440 -2.0009 -3.9035 10 1 2.0854 -3.2117 -3.9484 11 1 3.7355 -1.9086 -5.1566 12 1 3.8649 -2.0898 -2.7419 13 6 2.0401 -0.7213 1.2492 14 7 1.5505 -0.0288 2.4487 15 6 2.0211 -0.6953 3.6702 16 6 1.4995 0.0412 4.8771 17 7 2.0533 1.0852 5.4350 18 6 1.3180 1.4833 6.4818 19 6 1.6248 2.6350 7.3662 20 6 2.7649 3.4040 7.1427 21 6 3.0426 4.4771 7.9652 22 6 2.1974 4.7826 9.0167 23 6 1.0669 4.0194 9.2463 24 6 0.7767 2.9475 8.4265 25 7 0.2797 0.6847 6.5958 26 7 0.3810 -0.2596 5.5612 27 1 -0.2349 -0.9856 5.3758 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1299 -0.7217 -1.2491 35 1 1.6765 -1.7489 -1.2494 36 1 1.6655 -0.1938 -5.6868 37 1 3.1301 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2491 39 1 0.5440 0.0412 2.4402 40 1 3.1109 -0.6956 3.6871 41 1 1.6572 -1.7227 3.6868 42 1 3.4278 3.1635 6.3247 43 1 3.9236 5.0766 7.7901 44 1 2.4208 5.6204 9.6605 45 1 0.4102 4.2625 10.0684 46 1 -0.1065 2.3525 8.6065 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000774813444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:44 Heat of formation + Delta-G solvation = 79.264426 kcal Electronic energy + Delta-G solvation = -24799.000387 eV Core-core repulsion = 21302.840722 eV Total energy + Delta-G solvation = -3496.159665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.180 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.19812 -39.87273 -39.26081 -36.19203 -34.44100 -34.01663 -32.84224 -31.79207 -31.07991 -29.68243 -27.93349 -27.90087 -25.86162 -24.88016 -23.69966 -23.35835 -22.00675 -21.45651 -19.63055 -18.90833 -18.84001 -17.73178 -17.02106 -16.82502 -16.40460 -16.28776 -15.83765 -15.66173 -15.34645 -14.91524 -14.71772 -14.47059 -14.32037 -14.24877 -14.02705 -13.85235 -13.72245 -13.46351 -12.88059 -12.79401 -12.73782 -12.41604 -12.25976 -12.18894 -12.06729 -12.00935 -11.71699 -11.52141 -11.35643 -11.15814 -11.07497 -10.91373 -10.79363 -10.67813 -9.86919 -9.51790 -9.36608 -8.19553 -6.20089 -0.14871 0.48910 0.67936 1.37815 1.40692 1.51357 1.55038 1.87602 2.41754 2.74705 2.97460 3.15651 3.31057 3.41121 3.73648 4.05317 4.10535 4.13179 4.19533 4.27817 4.32380 4.37155 4.55222 4.58862 4.68525 4.75358 4.79689 4.86365 4.93891 5.04603 5.09548 5.10520 5.15125 5.16985 5.19689 5.39197 5.46914 5.52639 5.55426 5.59152 5.60164 5.63038 5.76257 5.82290 5.94263 6.03943 6.09783 6.34665 6.44263 6.87972 6.97164 7.42230 8.96801 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.025692 B = 0.002199 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.579945 B =12731.136577 C =13151.315230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.048 4.048 3 C -0.110 4.110 4 C -0.003 4.003 5 C -0.503 4.503 6 H 0.041 0.959 7 C -0.004 4.004 8 N -0.957 5.957 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.244 1.244 13 C 0.082 3.918 14 N -0.685 5.685 15 C 0.140 3.860 16 C 0.300 3.700 17 N -0.541 5.541 18 C 0.253 3.747 19 C -0.042 4.042 20 C -0.090 4.090 21 C -0.127 4.127 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.096 4.096 25 N -0.324 5.324 26 N -0.468 5.468 27 H 0.456 0.544 28 H 0.060 0.940 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.040 0.960 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.016 0.984 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.344 0.656 40 H 0.113 0.887 41 H 0.088 0.912 42 H 0.126 0.874 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.153 0.847 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.872 0.975 30.369 30.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.048 4.048 3 C -0.167 4.167 4 C -0.041 4.041 5 C -0.541 4.541 6 H 0.059 0.941 7 C -0.199 4.199 8 N -0.599 5.599 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.219 1.219 12 H -0.168 1.168 13 C -0.046 4.046 14 N -0.319 5.319 15 C 0.009 3.991 16 C 0.020 3.980 17 N -0.270 5.270 18 C -0.027 4.027 19 C -0.045 4.045 20 C -0.110 4.110 21 C -0.144 4.144 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.117 4.117 25 N -0.154 5.154 26 N -0.188 5.188 27 H 0.304 0.696 28 H 0.079 0.921 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.035 0.965 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.164 0.836 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.167 0.833 44 H 0.173 0.827 45 H 0.171 0.829 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.149 1.631 30.632 30.697 hybrid contribution -0.744 -1.813 -1.404 2.411 sum 0.405 -0.182 29.228 29.231 Atomic orbital electron populations 1.21711 0.95193 1.00958 1.00442 1.20350 0.95416 0.95658 0.93415 1.21517 0.99639 0.95913 0.99665 1.19600 0.95964 0.95452 0.93060 1.21452 1.30010 1.12026 0.90647 0.94116 1.25995 0.97711 1.00468 0.95770 1.70083 1.48410 1.42964 0.98459 0.85748 0.79651 0.79752 0.78000 1.19490 1.21881 1.16785 1.21924 1.00367 0.94900 0.87442 1.60324 1.16919 1.54268 1.00388 1.20524 1.02507 0.93991 0.82127 1.24522 0.85440 0.92609 0.95400 1.70464 1.32530 1.13553 1.10429 1.22698 0.89797 0.96214 0.93973 1.17712 0.97942 0.93285 0.95537 1.21330 0.95536 0.94683 0.99484 1.21442 1.01010 0.96799 0.95180 1.21710 0.93691 0.99597 0.97075 1.21419 0.98310 0.94627 0.99914 1.21312 0.98708 0.97938 0.93704 1.78083 1.22786 1.04313 1.10177 1.47945 1.21755 1.26571 1.22535 0.69561 0.92129 0.94827 0.92931 0.94114 0.95644 0.92217 0.96532 0.96390 0.92998 0.90556 0.93509 0.83625 0.86882 0.89423 0.85631 0.83258 0.82652 0.82915 0.85415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.27 7.89 71.98 0.57 -3.70 16 2 C -0.05 -1.69 0.60 -52.18 -0.03 -1.72 16 3 C -0.11 -4.14 8.06 71.98 0.58 -3.56 16 4 C 0.00 -0.13 3.11 29.85 0.09 -0.03 16 5 C -0.50 -27.80 8.20 25.60 0.21 -27.59 16 6 H 0.04 2.50 5.92 -2.91 -0.02 2.48 16 7 C 0.00 -0.24 5.47 84.65 0.46 0.22 16 8 N -0.96 -60.09 13.96 21.45 0.30 -59.79 16 9 Si 0.94 43.77 27.47 68.60 1.88 45.66 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.24 -10.38 6.54 99.48 0.65 -9.73 16 13 C 0.08 2.13 4.65 86.30 0.40 2.53 16 14 N -0.69 -15.31 5.70 -517.93 -2.95 -18.26 16 15 C 0.14 2.40 6.31 85.56 0.54 2.94 16 16 C 0.30 6.45 7.73 138.24 1.07 7.52 16 17 N -0.54 -14.78 10.82 -180.98 -1.96 -16.74 16 18 C 0.25 6.80 7.78 137.47 1.07 7.87 16 19 C -0.04 -1.00 5.88 -20.04 -0.12 -1.12 16 20 C -0.09 -1.91 9.69 22.48 0.22 -1.69 16 21 C -0.13 -1.93 10.03 22.24 0.22 -1.70 16 22 C -0.10 -1.26 10.04 22.31 0.22 -1.04 16 23 C -0.12 -1.73 10.03 22.24 0.22 -1.51 16 24 C -0.10 -1.86 9.68 22.48 0.22 -1.65 16 25 N -0.32 -8.09 12.43 -52.35 -0.65 -8.74 16 26 N -0.47 -8.89 7.44 -50.73 -0.38 -9.27 16 27 H 0.46 5.18 8.96 -213.11 -1.91 3.27 16 28 H 0.06 1.71 6.57 -2.38 -0.02 1.70 16 29 H 0.03 1.38 6.62 -2.39 -0.02 1.36 16 30 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.02 1.10 6.62 -2.38 -0.02 1.08 16 33 H 0.06 2.05 7.60 -2.39 -0.02 2.03 16 34 H 0.02 0.72 7.20 -2.39 -0.02 0.71 16 35 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 36 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.34 7.37 6.76 -89.70 -0.61 6.76 16 40 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.13 2.84 7.84 -2.91 -0.02 2.82 16 43 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 45 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 46 H 0.13 2.38 7.83 -2.91 -0.02 2.36 16 Total: -1.00 -73.35 374.57 0.62 -72.73 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -1.57 Total: 18.64 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 5.95 Total: -24.23 kcal Atomic # 7 Polarization: -107.16 SS G_CDS: -5.64 Total: -112.80 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.66 kcal Total: -73.35 0.62 -72.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000774813444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.999 kcal (2) G-P(sol) polarization free energy of solvation -73.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.734 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds