Wall clock time and date at job start Fri Apr 10 2020 23:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47085 * 2 1 4 4 C 1.53002 * 109.46920 * 119.99804 * 2 1 3 5 5 N 1.46893 * 109.47054 * 64.52141 * 4 2 1 6 6 C 1.46904 * 111.00062 * 210.55198 * 5 4 2 7 7 C 1.50697 * 109.47298 * 66.04155 * 6 5 4 8 8 H 1.07996 * 119.99885 * 0.02562 * 7 6 5 9 9 C 1.37880 * 120.00261 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99777 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00090 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47200 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47208 * 119.99805 * 11 9 7 14 14 H 1.48496 * 109.47259 * 239.99786 * 11 9 7 15 15 C 1.46897 * 111.00388 * 86.59631 * 5 4 2 16 16 C 1.50703 * 109.47247 * 287.79568 * 15 5 4 17 17 N 1.32362 * 118.51088 * 278.40256 * 16 15 5 18 18 C 1.32629 * 121.48470 * 180.02562 * 17 16 15 19 19 N 1.37847 * 120.91137 * 180.02562 * 18 17 16 20 20 C 1.41647 * 118.17486 * 359.97438 * 18 17 16 21 21 C 1.39923 * 122.11751 * 179.97438 * 20 18 17 22 22 C 1.36387 * 119.50521 * 180.02562 * 21 20 18 23 23 C 1.39208 * 120.88999 * 0.02562 * 22 21 20 24 24 C 1.36314 * 121.02973 * 359.97438 * 23 22 21 25 25 C 1.40146 * 119.58472 * 0.02562 * 24 23 22 26 26 N 1.31168 * 118.50961 * 98.41676 * 16 15 5 27 27 H 1.08998 * 109.47344 * 60.00197 * 1 2 3 28 28 H 1.09004 * 109.47114 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47512 * 300.00215 * 1 2 3 30 30 H 1.09001 * 109.47512 * 239.99785 * 2 1 3 31 31 H 1.09004 * 109.47061 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47358 * 299.99901 * 3 2 1 33 33 H 1.08994 * 109.47472 * 60.00143 * 3 2 1 34 34 H 1.08999 * 109.47381 * 304.51651 * 4 2 1 35 35 H 1.09002 * 109.46577 * 184.51629 * 4 2 1 36 36 H 1.09002 * 109.47513 * 186.04706 * 6 5 4 37 37 H 1.09007 * 109.46285 * 306.04247 * 6 5 4 38 38 H 0.96996 * 119.99858 * 180.02562 * 10 9 7 39 39 H 1.09007 * 109.47430 * 167.79755 * 15 5 4 40 40 H 1.09000 * 109.47214 * 47.79777 * 15 5 4 41 41 H 0.97001 * 119.99416 * 179.97438 * 19 18 17 42 42 H 0.96998 * 119.99989 * 359.97438 * 19 18 17 43 43 H 1.07997 * 120.24404 * 0.04915 * 21 20 18 44 44 H 1.08001 * 119.55105 * 179.97438 * 22 21 20 45 45 H 1.07999 * 119.48511 * 180.02562 * 23 22 21 46 46 H 1.08007 * 120.20995 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 1.6414 -2.1341 1.1960 6 6 1.4360 -2.6745 2.5465 7 6 0.2542 -1.9925 3.1861 8 1 -0.2901 -1.2338 2.6436 9 6 -0.1321 -2.3370 4.4641 10 7 0.5305 -3.2613 5.1246 11 14 -1.5965 -1.4911 5.2572 12 1 -2.1650 -0.4964 4.3124 13 1 -2.6305 -2.5028 5.5929 14 1 -1.1581 -0.8013 6.4969 15 6 2.6271 -2.9315 0.4542 16 6 2.5270 -2.6135 -1.0155 17 7 1.5839 -3.2093 -1.7280 18 6 1.4429 -2.9733 -3.0255 19 7 0.4562 -3.6000 -3.7561 20 6 2.3335 -2.0589 -3.6396 21 6 2.2595 -1.7496 -5.0023 22 6 3.1448 -0.8615 -5.5385 23 6 4.1204 -0.2596 -4.7487 24 6 4.2187 -0.5396 -3.4183 25 6 3.3251 -1.4478 -2.8344 26 7 3.3786 -1.7592 -1.5307 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6120 -0.2562 2.1374 35 1 3.1269 -0.6516 1.2906 36 1 1.2472 -3.7462 2.4842 37 1 2.3275 -2.4970 3.1482 38 1 0.2585 -3.5040 6.0234 39 1 2.4287 -3.9919 0.6108 40 1 3.6294 -2.6930 0.8101 41 1 0.3648 -3.4173 -4.7044 42 1 -0.1467 -4.2236 -3.3220 43 1 1.5067 -2.2105 -5.6246 44 1 3.0886 -0.6226 -6.5903 45 1 4.8096 0.4408 -5.1968 46 1 4.9806 -0.0647 -2.8178 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782934602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:05 Heat of formation + Delta-G solvation = 49.632907 kcal Electronic energy + Delta-G solvation = -26901.491654 eV Core-core repulsion = 23404.047069 eV Total energy + Delta-G solvation = -3497.444584 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.180 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.31550 -39.43285 -38.23012 -36.88120 -35.62104 -34.49124 -33.11854 -31.92049 -31.29453 -29.33048 -27.99077 -27.93907 -26.06888 -25.12531 -23.83735 -22.75656 -22.34028 -20.90042 -19.73592 -19.20820 -18.38259 -17.92070 -17.08113 -16.87471 -16.41072 -16.16982 -15.92650 -15.67806 -15.46784 -15.24740 -14.95291 -14.72342 -14.35629 -14.09681 -13.82049 -13.44148 -13.37400 -13.21303 -13.13998 -13.03985 -12.75171 -12.70702 -12.54790 -12.47088 -12.37691 -12.00520 -11.77157 -11.52188 -11.42541 -11.30192 -11.03070 -10.59100 -10.47288 -10.06440 -10.04586 -9.00940 -8.74254 -8.16657 -6.24719 -0.43404 -0.10986 1.08289 1.40814 1.41282 1.54864 2.11977 2.30784 2.42534 2.96561 3.15657 3.19312 3.37905 3.55329 3.69995 3.82850 4.04282 4.11215 4.18019 4.33867 4.35937 4.42016 4.44982 4.56093 4.63805 4.69056 4.78962 4.89426 4.92010 4.95043 5.02796 5.09417 5.11393 5.19708 5.25322 5.29274 5.32356 5.43472 5.51952 5.54861 5.60103 5.71365 5.80537 6.07324 6.11310 6.15666 6.36649 6.61036 6.78059 6.90741 7.43464 7.49103 8.94867 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.019647 B = 0.003795 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.817458 B = 7376.429493 C = 7739.380917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.132 4.132 4 C 0.075 3.925 5 N -0.521 5.521 6 C 0.212 3.788 7 C -0.511 4.511 8 H 0.063 0.937 9 C 0.004 3.996 10 N -0.934 5.934 11 Si 0.964 3.036 12 H -0.266 1.266 13 H -0.278 1.278 14 H -0.279 1.279 15 C 0.119 3.881 16 C 0.390 3.610 17 N -0.605 5.605 18 C 0.464 3.536 19 N -0.802 5.802 20 C -0.218 4.218 21 C -0.069 4.069 22 C -0.134 4.134 23 C -0.064 4.064 24 C -0.133 4.133 25 C 0.160 3.840 26 N -0.565 5.565 27 H 0.049 0.951 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.057 0.943 35 H 0.024 0.976 36 H 0.007 0.993 37 H -0.035 1.035 38 H 0.263 0.737 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.426 0.574 42 H 0.417 0.583 43 H 0.157 0.843 44 H 0.165 0.835 45 H 0.162 0.838 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.973 5.528 -26.138 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.110 4.110 3 C -0.190 4.190 4 C -0.053 4.053 5 N -0.246 5.246 6 C 0.086 3.914 7 C -0.550 4.550 8 H 0.081 0.919 9 C -0.194 4.194 10 N -0.575 5.575 11 Si 0.789 3.211 12 H -0.190 1.190 13 H -0.204 1.204 14 H -0.204 1.204 15 C -0.011 4.011 16 C 0.119 3.881 17 N -0.333 5.333 18 C 0.207 3.793 19 N -0.347 5.347 20 C -0.226 4.226 21 C -0.089 4.089 22 C -0.152 4.152 23 C -0.085 4.085 24 C -0.152 4.152 25 C 0.035 3.965 26 N -0.286 5.286 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.042 0.958 36 H 0.025 0.975 37 H -0.018 1.018 38 H 0.072 0.928 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.261 0.739 42 H 0.248 0.752 43 H 0.175 0.825 44 H 0.183 0.817 45 H 0.180 0.820 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.699 5.270 -25.252 26.060 hybrid contribution -0.186 -0.160 0.703 0.745 sum 3.513 5.110 -24.549 25.320 Atomic orbital electron populations 1.21543 0.95700 1.00786 0.99829 1.21241 0.95638 0.96161 0.97961 1.21678 1.00710 0.95019 1.01582 1.22054 0.96409 0.88527 0.98287 1.61883 1.43173 1.02024 1.17491 1.19411 0.94442 0.94385 0.83175 1.21428 1.13312 1.21203 0.99042 0.91870 1.25832 0.99873 0.95967 0.97749 1.70092 1.42093 1.32583 1.12718 0.85408 0.78999 0.78473 0.78202 1.18977 1.20406 1.20426 1.20756 0.94756 0.98784 0.86831 1.22195 0.84407 0.85960 0.95517 1.67682 1.26326 1.33093 1.06227 1.18920 0.86417 0.86034 0.87975 1.42012 1.32681 1.47649 1.12399 1.19195 1.01298 1.04217 0.97933 1.21066 0.99330 0.97106 0.91399 1.21291 0.95031 0.96980 1.01947 1.21396 0.97399 0.97429 0.92253 1.20853 0.99474 0.98488 0.96407 1.19190 0.93755 0.94818 0.88701 1.68653 1.28570 1.18587 1.12762 0.93194 0.94096 0.94110 0.91311 0.92788 0.92004 0.92952 0.92455 0.95766 0.97529 1.01753 0.92790 0.90040 0.93266 0.73919 0.75162 0.82502 0.81717 0.82011 0.84726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 9.08 71.98 0.65 -3.99 16 2 C -0.09 -3.41 2.83 -10.79 -0.03 -3.44 16 3 C -0.13 -4.11 9.19 71.98 0.66 -3.45 16 4 C 0.08 3.30 4.15 86.31 0.36 3.66 16 5 N -0.52 -24.64 3.82 -905.35 -3.46 -28.09 16 6 C 0.21 11.83 4.68 85.56 0.40 12.23 16 7 C -0.51 -29.84 8.13 25.60 0.21 -29.63 16 8 H 0.06 3.66 7.48 -2.91 -0.02 3.64 16 9 C 0.00 0.20 5.46 84.66 0.46 0.67 16 10 N -0.93 -57.38 13.29 21.45 0.28 -57.10 16 11 Si 0.96 45.63 29.54 68.60 2.03 47.66 16 12 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 C 0.12 5.06 5.36 85.56 0.46 5.52 16 16 C 0.39 14.96 5.17 138.77 0.72 15.68 16 17 N -0.61 -21.69 10.31 -184.60 -1.90 -23.60 16 18 C 0.46 12.61 7.87 134.01 1.05 13.66 16 19 N -0.80 -13.38 8.98 -54.40 -0.49 -13.87 16 20 C -0.22 -5.43 5.75 -21.20 -0.12 -5.55 16 21 C -0.07 -1.04 9.54 22.25 0.21 -0.83 16 22 C -0.13 -1.60 9.96 22.07 0.22 -1.38 16 23 C -0.06 -0.93 9.95 22.05 0.22 -0.71 16 24 C -0.13 -2.99 10.01 22.28 0.22 -2.77 16 25 C 0.16 4.72 6.23 40.08 0.25 4.97 16 26 N -0.56 -20.16 8.73 -181.80 -1.59 -21.74 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.04 1.78 7.74 -2.39 -0.02 1.76 16 29 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.07 2.66 3.84 -2.39 -0.01 2.65 16 31 H 0.05 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 2.76 6.63 -2.39 -0.02 2.75 16 35 H 0.02 1.05 7.58 -2.39 -0.02 1.03 16 36 H 0.01 0.40 7.86 -2.39 -0.02 0.38 16 37 H -0.04 -2.11 8.12 -2.38 -0.02 -2.13 16 38 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.08 3.52 7.81 -2.38 -0.02 3.50 16 40 H 0.05 2.08 7.72 -2.39 -0.02 2.06 16 41 H 0.43 3.61 7.09 -92.71 -0.66 2.96 16 42 H 0.42 6.67 8.95 -92.71 -0.83 5.84 16 43 H 0.16 1.14 6.59 -2.91 -0.02 1.13 16 44 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 45 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 46 H 0.13 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -75.35 369.93 0.34 -75.01 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -0.48 Total: 17.10 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 5.95 Total: 4.63 kcal Atomic # 7 Polarization: -137.25 SS G_CDS: -7.15 Total: -144.40 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.35 0.34 -75.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782934602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.642 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds