Wall clock time and date at job start Fri Apr 10 2020 23:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34783 * 119.99784 * 2 1 4 4 O 1.21555 * 119.99912 * 185.40098 * 3 2 1 5 5 C 1.47844 * 119.99669 * 5.39498 * 3 2 1 6 6 C 1.39319 * 119.88293 * 45.54974 * 5 3 2 7 7 C 1.37941 * 119.60897 * 179.97438 * 6 5 3 8 8 C 1.38087 * 119.93403 * 0.13394 * 7 6 5 9 9 C 1.39027 * 120.85911 * 0.03218 * 8 7 6 10 10 C 1.37430 * 119.75804 * 359.43105 * 9 8 7 11 11 C 1.50602 * 122.63156 * 180.97526 * 10 9 8 12 12 C 1.52741 * 110.58766 * 342.18412 * 11 10 9 13 13 C 1.53321 * 108.36054 * 51.14004 * 12 11 10 14 14 C 1.50643 * 117.70603 * 179.31450 * 9 8 7 15 15 C 1.46499 * 120.00483 * 179.97438 * 2 1 3 16 16 C 1.53494 * 114.20488 * 300.00183 * 15 2 1 17 17 N 1.47070 * 87.98730 * 87.51902 * 16 15 2 18 18 C 1.36932 * 136.05566 * 207.08782 * 17 16 15 19 19 H 1.08006 * 119.99938 * 354.55470 * 18 17 16 20 20 C 1.38811 * 119.99984 * 174.55593 * 18 17 16 21 21 N 1.31615 * 119.99951 * 179.24366 * 20 18 17 22 22 Si 1.86797 * 120.00110 * 359.23733 * 20 18 17 23 23 H 1.48497 * 109.47447 * 174.22658 * 22 20 18 24 24 H 1.48499 * 109.47486 * 294.23230 * 22 20 18 25 25 H 1.48504 * 109.46677 * 54.22599 * 22 20 18 26 26 C 1.47063 * 87.88320 * 27.34167 * 17 16 15 27 27 H 1.09005 * 109.46929 * 274.26597 * 1 2 3 28 28 H 1.08991 * 109.47569 * 34.26881 * 1 2 3 29 29 H 1.09000 * 109.46868 * 154.26895 * 1 2 3 30 30 H 1.08003 * 120.19802 * 359.91748 * 6 5 3 31 31 H 1.08000 * 120.03513 * 180.11984 * 7 6 5 32 32 H 1.08005 * 119.57481 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.25794 * 102.47205 * 11 10 9 34 34 H 1.09006 * 109.25658 * 221.89899 * 11 10 9 35 35 H 1.08996 * 109.68687 * 170.85966 * 12 11 10 36 36 H 1.08998 * 109.68002 * 291.42119 * 12 11 10 37 37 H 1.08998 * 109.68275 * 49.99239 * 13 12 11 38 38 H 1.09007 * 109.67226 * 170.53594 * 13 12 11 39 39 H 1.08997 * 109.25165 * 282.67518 * 14 9 8 40 40 H 1.09007 * 109.25206 * 42.08752 * 14 9 8 41 41 H 1.08997 * 113.28482 * 166.92737 * 15 2 1 42 42 H 1.08996 * 113.46748 * 332.73264 * 16 15 2 43 43 H 1.09009 * 113.46649 * 202.29746 * 16 15 2 44 44 H 0.97004 * 120.00137 * 5.03968 * 21 20 18 45 45 H 1.08998 * 113.46767 * 87.44071 * 26 17 16 46 46 H 1.09003 * 113.46648 * 217.87765 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3503 1.1696 -0.0991 5 6 1.4044 2.4447 0.1204 6 6 0.3989 2.5800 1.0752 7 6 -0.2824 3.7746 1.1829 8 6 0.0330 4.8257 0.3448 9 6 1.0325 4.6988 -0.6132 10 6 1.7260 3.5174 -0.7231 11 6 2.8346 3.3164 -1.7224 12 6 2.7652 4.3745 -2.8217 13 6 2.6824 5.7547 -2.1590 14 6 1.3071 5.8850 -1.5003 15 6 2.1976 -1.2687 0.0006 16 6 1.9061 -2.1632 1.2134 17 7 0.7743 -2.7256 0.4612 18 6 -0.4279 -3.3020 0.7733 19 1 -0.6790 -3.5028 1.8044 20 6 -1.3239 -3.6283 -0.2355 21 7 -2.4731 -4.1960 0.0634 22 14 -0.8986 -3.2616 -2.0170 23 1 -1.9475 -3.8275 -2.9029 24 1 -0.8229 -1.7919 -2.2156 25 1 0.4129 -3.8741 -2.3489 26 6 1.5049 -2.4023 -0.7735 27 1 -0.3633 0.0764 1.0249 28 1 -0.3634 0.8492 -0.5786 29 1 -0.3633 -0.9258 -0.4462 30 1 0.1536 1.7541 1.7265 31 1 -1.0618 3.8876 1.9219 32 1 -0.5039 5.7586 0.4345 33 1 3.7955 3.3898 -1.2129 34 1 2.7404 2.3268 -2.1696 35 1 3.6593 4.3183 -3.4424 36 1 1.8802 4.2083 -3.4358 37 1 3.4669 5.8491 -1.4082 38 1 2.8007 6.5319 -2.9140 39 1 0.5347 5.9470 -2.2668 40 1 1.2902 6.7945 -0.8997 41 1 3.2576 -1.1542 -0.2259 42 1 1.6040 -1.6067 2.1006 43 1 2.6944 -2.8878 1.4178 44 1 -2.7261 -4.3198 0.9916 45 1 2.1874 -3.1899 -1.0929 46 1 0.8610 -2.0495 -1.5792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042777458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:13 Heat of formation + Delta-G solvation = 56.342020 kcal Electronic energy + Delta-G solvation = -27045.092203 eV Core-core repulsion = 23515.645797 eV Total energy + Delta-G solvation = -3529.446406 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.77854 -39.48864 -37.85042 -36.20680 -34.20031 -32.67378 -32.24155 -30.36825 -29.20563 -28.13403 -26.37732 -25.38415 -24.26196 -23.64776 -22.78767 -22.10323 -20.16823 -19.51709 -18.52680 -17.58502 -16.92450 -16.55463 -16.08020 -15.74779 -15.28866 -14.99872 -14.65823 -14.24924 -13.99617 -13.88532 -13.63847 -13.58926 -13.20008 -13.08104 -12.87799 -12.66237 -12.56352 -12.08684 -11.94236 -11.79739 -11.55625 -11.36940 -11.28250 -11.04576 -10.94529 -10.76944 -10.58504 -10.44833 -10.41012 -9.61374 -9.28288 -9.14344 -9.04512 -8.78607 -8.63239 -8.17364 -7.21983 -6.36784 -3.30350 0.95979 1.30159 2.86385 3.22087 3.30280 3.37134 3.57842 3.71316 4.45775 4.50113 4.50468 4.62290 4.72121 4.75193 4.87542 4.97526 5.02365 5.11121 5.18983 5.28641 5.35189 5.39807 5.46652 5.62606 5.66351 5.66930 5.74323 5.79027 5.81017 5.86692 5.90247 5.95502 6.03612 6.10529 6.15385 6.17554 6.21041 6.32736 6.33533 6.37215 6.38876 6.53703 6.63414 6.84697 6.99030 7.03209 7.73162 8.17066 8.36908 8.90922 9.42384 10.28642 11.14694 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004030 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.134853 B = 6947.075014 C = 7163.319742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.575 5.575 3 C 0.559 3.441 4 O -0.543 6.543 5 C -0.124 4.124 6 C -0.085 4.085 7 C -0.129 4.129 8 C -0.102 4.102 9 C -0.089 4.089 10 C -0.026 4.026 11 C -0.081 4.081 12 C -0.121 4.121 13 C -0.120 4.120 14 C -0.077 4.077 15 C 0.097 3.903 16 C 0.111 3.889 17 N -0.626 5.626 18 C -0.300 4.300 19 H 0.082 0.918 20 C -0.023 4.023 21 N -0.934 5.934 22 Si 1.067 2.933 23 H -0.295 1.295 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.087 3.913 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.103 0.897 30 H 0.132 0.868 31 H 0.127 0.873 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.048 0.952 43 H 0.050 0.950 44 H 0.261 0.739 45 H 0.057 0.943 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.635 20.528 -2.712 22.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.305 5.305 3 C 0.347 3.653 4 O -0.422 6.422 5 C -0.127 4.127 6 C -0.103 4.103 7 C -0.146 4.146 8 C -0.120 4.120 9 C -0.089 4.089 10 C -0.027 4.027 11 C -0.118 4.118 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.114 4.114 15 C -0.008 4.008 16 C -0.017 4.017 17 N -0.355 5.355 18 C -0.426 4.426 19 H 0.100 0.900 20 C -0.221 4.221 21 N -0.577 5.577 22 Si 0.900 3.100 23 H -0.223 1.223 24 H -0.219 1.219 25 H -0.216 1.216 26 C -0.039 4.039 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.150 0.850 31 H 0.145 0.855 32 H 0.140 0.860 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.126 0.874 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 7.466 20.191 -4.248 21.942 hybrid contribution 0.314 -0.158 1.863 1.896 sum 7.780 20.033 -2.385 21.623 Atomic orbital electron populations 1.22123 0.78221 1.04256 1.01978 1.47318 1.07599 1.04508 1.71056 1.18352 0.86991 0.83439 0.76476 1.90726 1.13617 1.87356 1.50465 1.19930 0.98785 0.94341 0.99680 1.21392 0.93568 0.98132 0.97218 1.20993 1.00470 0.93104 1.00082 1.21286 0.96812 0.98892 0.95049 1.19516 0.96809 0.94791 0.97795 1.19566 0.95948 0.91493 0.95647 1.20519 0.97121 0.99525 0.94589 1.21599 1.02188 0.94534 0.97547 1.21616 0.96904 0.97334 0.99904 1.20501 0.97815 0.95215 0.97858 1.22540 0.95888 0.82977 0.99430 1.22773 0.90541 0.93256 0.95085 1.46219 1.15197 1.72765 1.01278 1.20141 0.89213 1.37984 0.95306 0.90025 1.25616 0.94163 0.98389 1.03977 1.70907 1.22223 1.43900 1.20631 0.83811 0.74587 0.75366 0.76188 1.22272 1.21900 1.21619 1.23209 0.94230 0.93957 0.92476 0.92542 0.92503 0.87857 0.85046 0.85500 0.85983 0.89442 0.90655 0.91370 0.91715 0.91468 0.91528 0.90549 0.90908 0.87407 0.93365 0.93269 0.92826 0.92551 0.92925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 8.18 59.85 0.49 1.89 16 2 N -0.57 -10.41 3.12 -174.67 -0.54 -10.96 16 3 C 0.56 9.75 6.37 -12.33 -0.08 9.67 16 4 O -0.54 -10.40 14.74 5.32 0.08 -10.32 16 5 C -0.12 -1.88 4.84 -104.83 -0.51 -2.39 16 6 C -0.08 -1.14 8.00 -39.29 -0.31 -1.46 16 7 C -0.13 -1.45 10.03 -39.75 -0.40 -1.84 16 8 C -0.10 -1.07 9.60 -39.34 -0.38 -1.45 16 9 C -0.09 -1.01 5.73 -104.65 -0.60 -1.61 16 10 C -0.03 -0.35 5.77 -104.23 -0.60 -0.95 16 11 C -0.08 -1.03 4.30 -28.06 -0.12 -1.15 16 12 C -0.12 -1.18 5.98 -26.70 -0.16 -1.34 16 13 C -0.12 -1.00 6.00 -26.54 -0.16 -1.16 16 14 C -0.08 -0.66 5.67 -27.89 -0.16 -0.82 16 15 C 0.10 1.80 4.70 -67.67 -0.32 1.48 16 16 C 0.11 2.18 8.31 -8.51 -0.07 2.11 16 17 N -0.63 -14.65 2.41 -184.62 -0.44 -15.09 16 18 C -0.30 -8.21 10.60 -15.06 -0.16 -8.37 16 19 H 0.08 2.39 8.05 -52.48 -0.42 1.96 16 20 C -0.02 -0.64 5.49 -17.43 -0.10 -0.74 16 21 N -0.93 -28.56 13.70 55.49 0.76 -27.80 16 22 Si 1.07 25.97 23.88 -169.99 -4.06 21.91 16 23 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 24 H -0.29 -6.53 5.86 56.52 0.33 -6.20 16 25 H -0.29 -6.67 6.40 56.52 0.36 -6.31 16 26 C 0.09 1.81 5.02 -8.38 -0.04 1.77 16 27 H 0.06 0.99 6.80 -51.93 -0.35 0.64 16 28 H 0.06 0.93 6.78 -51.93 -0.35 0.58 16 29 H 0.10 2.23 3.00 -51.93 -0.16 2.07 16 30 H 0.13 1.76 6.30 -52.48 -0.33 1.43 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 32 H 0.12 0.96 8.05 -52.48 -0.42 0.53 16 33 H 0.09 1.18 7.86 -51.93 -0.41 0.78 16 34 H 0.07 1.08 7.13 -51.93 -0.37 0.71 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.07 0.59 8.10 -51.93 -0.42 0.16 16 38 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.11 1.88 7.26 -51.93 -0.38 1.51 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.05 0.91 8.14 -51.92 -0.42 0.48 16 44 H 0.26 7.91 8.73 -40.82 -0.36 7.56 16 45 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 46 H 0.05 1.14 3.45 -51.93 -0.18 0.96 16 LS Contribution 346.39 15.07 5.22 5.22 Total: -1.00 -31.41 346.39 -9.51 -40.92 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -6.85 Total: 2.48 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -3.67 Total: -6.36 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.23 Total: -53.85 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 25.97 SS G_CDS: -4.06 Total: 21.91 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.41 -9.51 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042777458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.260 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds