Wall clock time and date at job start Fri Apr 10 2020 23:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34783 * 119.99784 * 2 1 4 4 O 1.21555 * 119.99912 * 185.40098 * 3 2 1 5 5 C 1.47844 * 119.99669 * 5.39498 * 3 2 1 6 6 C 1.39319 * 119.88293 * 45.54974 * 5 3 2 7 7 C 1.37941 * 119.60897 * 179.97438 * 6 5 3 8 8 C 1.38087 * 119.93403 * 0.13394 * 7 6 5 9 9 C 1.39027 * 120.85911 * 0.03218 * 8 7 6 10 10 C 1.37430 * 119.75804 * 359.43105 * 9 8 7 11 11 C 1.50602 * 122.63156 * 180.97526 * 10 9 8 12 12 C 1.52741 * 110.58766 * 342.18412 * 11 10 9 13 13 C 1.53321 * 108.36054 * 51.14004 * 12 11 10 14 14 C 1.50643 * 117.70603 * 179.31450 * 9 8 7 15 15 C 1.46499 * 120.00483 * 179.97438 * 2 1 3 16 16 C 1.53494 * 114.20488 * 300.00183 * 15 2 1 17 17 N 1.47070 * 87.98730 * 87.51902 * 16 15 2 18 18 C 1.36932 * 136.05566 * 207.08782 * 17 16 15 19 19 H 1.08006 * 119.99938 * 354.55470 * 18 17 16 20 20 C 1.38811 * 119.99984 * 174.55593 * 18 17 16 21 21 N 1.31615 * 119.99951 * 179.24366 * 20 18 17 22 22 Si 1.86797 * 120.00110 * 359.23733 * 20 18 17 23 23 H 1.48497 * 109.47447 * 174.22658 * 22 20 18 24 24 H 1.48499 * 109.47486 * 294.23230 * 22 20 18 25 25 H 1.48504 * 109.46677 * 54.22599 * 22 20 18 26 26 C 1.47063 * 87.88320 * 27.34167 * 17 16 15 27 27 H 1.09005 * 109.46929 * 274.26597 * 1 2 3 28 28 H 1.08991 * 109.47569 * 34.26881 * 1 2 3 29 29 H 1.09000 * 109.46868 * 154.26895 * 1 2 3 30 30 H 1.08003 * 120.19802 * 359.91748 * 6 5 3 31 31 H 1.08000 * 120.03513 * 180.11984 * 7 6 5 32 32 H 1.08005 * 119.57481 * 180.02562 * 8 7 6 33 33 H 1.09005 * 109.25794 * 102.47205 * 11 10 9 34 34 H 1.09006 * 109.25658 * 221.89899 * 11 10 9 35 35 H 1.08996 * 109.68687 * 170.85966 * 12 11 10 36 36 H 1.08998 * 109.68002 * 291.42119 * 12 11 10 37 37 H 1.08998 * 109.68275 * 49.99239 * 13 12 11 38 38 H 1.09007 * 109.67226 * 170.53594 * 13 12 11 39 39 H 1.08997 * 109.25165 * 282.67518 * 14 9 8 40 40 H 1.09007 * 109.25206 * 42.08752 * 14 9 8 41 41 H 1.08997 * 113.28482 * 166.92737 * 15 2 1 42 42 H 1.08996 * 113.46748 * 332.73264 * 16 15 2 43 43 H 1.09009 * 113.46649 * 202.29746 * 16 15 2 44 44 H 0.97004 * 120.00137 * 5.03968 * 21 20 18 45 45 H 1.08998 * 113.46767 * 87.44071 * 26 17 16 46 46 H 1.09003 * 113.46648 * 217.87765 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3503 1.1696 -0.0991 5 6 1.4044 2.4447 0.1204 6 6 0.3989 2.5800 1.0752 7 6 -0.2824 3.7746 1.1829 8 6 0.0330 4.8257 0.3448 9 6 1.0325 4.6988 -0.6132 10 6 1.7260 3.5174 -0.7231 11 6 2.8346 3.3164 -1.7224 12 6 2.7652 4.3745 -2.8217 13 6 2.6824 5.7547 -2.1590 14 6 1.3071 5.8850 -1.5003 15 6 2.1976 -1.2687 0.0006 16 6 1.9061 -2.1632 1.2134 17 7 0.7743 -2.7256 0.4612 18 6 -0.4279 -3.3020 0.7733 19 1 -0.6790 -3.5028 1.8044 20 6 -1.3239 -3.6283 -0.2355 21 7 -2.4731 -4.1960 0.0634 22 14 -0.8986 -3.2616 -2.0170 23 1 -1.9475 -3.8275 -2.9029 24 1 -0.8229 -1.7919 -2.2156 25 1 0.4129 -3.8741 -2.3489 26 6 1.5049 -2.4023 -0.7735 27 1 -0.3633 0.0764 1.0249 28 1 -0.3634 0.8492 -0.5786 29 1 -0.3633 -0.9258 -0.4462 30 1 0.1536 1.7541 1.7265 31 1 -1.0618 3.8876 1.9219 32 1 -0.5039 5.7586 0.4345 33 1 3.7955 3.3898 -1.2129 34 1 2.7404 2.3268 -2.1696 35 1 3.6593 4.3183 -3.4424 36 1 1.8802 4.2083 -3.4358 37 1 3.4669 5.8491 -1.4082 38 1 2.8007 6.5319 -2.9140 39 1 0.5347 5.9470 -2.2668 40 1 1.2902 6.7945 -0.8997 41 1 3.2576 -1.1542 -0.2259 42 1 1.6040 -1.6067 2.1006 43 1 2.6944 -2.8878 1.4178 44 1 -2.7261 -4.3198 0.9916 45 1 2.1874 -3.1899 -1.0929 46 1 0.8610 -2.0495 -1.5792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042777458.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:12 Heat of formation + Delta-G solvation = 38.434898 kcal Electronic energy + Delta-G solvation = -27045.868714 eV Core-core repulsion = 23515.645797 eV Total energy + Delta-G solvation = -3530.222917 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.99690 -40.77227 -39.26794 -37.08344 -35.69568 -34.48905 -33.43867 -31.23004 -30.44895 -29.64288 -27.91396 -27.03512 -25.54967 -24.56910 -23.70109 -23.59831 -21.62884 -20.35783 -20.13666 -19.41363 -18.27207 -17.97943 -17.27215 -16.75338 -16.63862 -16.13771 -15.91161 -15.83872 -15.52464 -15.12916 -14.78478 -14.64591 -14.62830 -14.29425 -14.14812 -13.78894 -13.56117 -13.40084 -13.32124 -13.02982 -12.81597 -12.67063 -12.64086 -12.45423 -12.29138 -12.18884 -11.77620 -11.54913 -11.25401 -11.22479 -11.14263 -11.07008 -10.84850 -9.80496 -9.62799 -9.53951 -9.21704 -8.61681 -5.47084 -0.04608 0.38126 1.35537 1.43518 1.58894 1.64085 1.86846 2.50177 2.72943 2.90294 3.21546 3.38776 3.55107 3.67967 3.73205 4.01672 4.04565 4.13339 4.16136 4.20425 4.23387 4.27594 4.38147 4.45421 4.52113 4.57150 4.59987 4.64226 4.66869 4.72731 4.82523 4.85708 4.91119 4.95878 5.01710 5.04950 5.11958 5.15969 5.16960 5.29392 5.40028 5.45259 5.47868 5.54245 5.65122 5.94512 5.97644 6.32048 6.69783 6.99197 7.31193 8.24517 8.92622 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004030 C = 0.003908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.134853 B = 6947.075014 C = 7163.319742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.581 5.581 3 C 0.561 3.439 4 O -0.565 6.565 5 C -0.151 4.151 6 C -0.097 4.097 7 C -0.128 4.128 8 C -0.094 4.094 9 C -0.090 4.090 10 C -0.042 4.042 11 C -0.077 4.077 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.077 4.077 15 C 0.112 3.888 16 C 0.112 3.888 17 N -0.648 5.648 18 C -0.279 4.279 19 H 0.051 0.949 20 C -0.073 4.073 21 N -0.972 5.972 22 Si 1.099 2.901 23 H -0.308 1.308 24 H -0.266 1.266 25 H -0.268 1.268 26 C 0.084 3.916 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.125 0.875 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.248 0.752 45 H 0.075 0.925 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.491 23.905 -3.768 25.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.311 5.311 3 C 0.352 3.648 4 O -0.445 6.445 5 C -0.154 4.154 6 C -0.116 4.116 7 C -0.146 4.146 8 C -0.112 4.112 9 C -0.090 4.090 10 C -0.043 4.043 11 C -0.114 4.114 12 C -0.155 4.155 13 C -0.155 4.155 14 C -0.113 4.113 15 C 0.007 3.993 16 C -0.014 4.014 17 N -0.377 5.377 18 C -0.406 4.406 19 H 0.068 0.932 20 C -0.266 4.266 21 N -0.618 5.618 22 Si 0.928 3.072 23 H -0.237 1.237 24 H -0.193 1.193 25 H -0.193 1.193 26 C -0.041 4.041 27 H 0.074 0.926 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.141 0.859 31 H 0.169 0.831 32 H 0.175 0.825 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.142 0.858 42 H 0.063 0.937 43 H 0.089 0.911 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.377 23.599 -5.282 25.593 hybrid contribution 0.109 -1.127 2.314 2.576 sum 8.485 22.472 -2.968 24.203 Atomic orbital electron populations 1.21945 0.78379 1.03205 1.01913 1.47389 1.07500 1.04706 1.71485 1.18752 0.86829 0.83940 0.75297 1.90698 1.14643 1.87722 1.51446 1.19889 1.00166 0.93723 1.01660 1.21423 0.93883 0.99160 0.97113 1.21314 1.00378 0.92316 1.00551 1.21720 0.96001 0.99835 0.93608 1.19921 0.96145 0.94789 0.98111 1.19758 0.96652 0.92092 0.95784 1.20444 0.96320 0.99382 0.95291 1.21597 1.02723 0.94555 0.96650 1.21624 0.96808 0.96792 1.00272 1.20609 0.98118 0.94590 0.98012 1.22390 0.96515 0.82631 0.97799 1.22948 0.89579 0.93623 0.95260 1.46182 1.15216 1.72595 1.03700 1.19930 0.90919 1.35990 0.93796 0.93156 1.26716 0.93765 0.98642 1.07438 1.71006 1.24030 1.47094 1.19654 0.83437 0.74880 0.76817 0.72107 1.23701 1.19288 1.19328 1.23385 0.94103 0.95119 0.91499 0.92643 0.90876 0.90846 0.85859 0.83080 0.82469 0.90997 0.93148 0.90500 0.91538 0.92052 0.89173 0.89174 0.88689 0.85763 0.93746 0.91106 0.94310 0.90754 0.93411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.19 8.18 127.77 1.05 4.24 16 2 N -0.58 -20.74 3.12 -824.81 -2.57 -23.31 16 3 C 0.56 19.48 6.37 86.78 0.55 20.03 16 4 O -0.56 -21.66 14.74 -3.89 -0.06 -21.72 16 5 C -0.15 -4.49 4.84 -20.00 -0.10 -4.59 16 6 C -0.10 -2.53 8.00 22.46 0.18 -2.35 16 7 C -0.13 -2.53 10.03 22.16 0.22 -2.31 16 8 C -0.09 -1.61 9.60 22.42 0.22 -1.39 16 9 C -0.09 -1.76 5.73 -19.88 -0.11 -1.88 16 10 C -0.04 -1.09 5.77 -19.61 -0.11 -1.20 16 11 C -0.08 -1.94 4.30 29.73 0.13 -1.81 16 12 C -0.12 -2.07 5.98 30.62 0.18 -1.88 16 13 C -0.12 -1.58 6.00 30.72 0.18 -1.40 16 14 C -0.08 -0.99 5.67 29.85 0.17 -0.82 16 15 C 0.11 4.02 4.70 45.55 0.21 4.23 16 16 C 0.11 4.31 8.31 83.17 0.69 5.00 16 17 N -0.65 -30.10 2.41 -738.02 -1.78 -31.88 16 18 C -0.28 -15.59 10.60 84.03 0.89 -14.70 16 19 H 0.05 3.07 8.05 -2.91 -0.02 3.05 16 20 C -0.07 -4.24 5.49 84.86 0.47 -3.78 16 21 N -0.97 -61.44 13.70 21.65 0.30 -61.14 16 22 Si 1.10 52.45 23.88 68.60 1.64 54.09 16 23 H -0.31 -15.30 7.11 99.48 0.71 -14.60 16 24 H -0.27 -11.49 5.86 99.48 0.58 -10.91 16 25 H -0.27 -11.69 6.40 99.48 0.64 -11.05 16 26 C 0.08 3.37 5.02 83.27 0.42 3.78 16 27 H 0.06 1.97 6.80 -2.38 -0.02 1.96 16 28 H 0.07 2.36 6.78 -2.39 -0.02 2.35 16 29 H 0.07 3.14 3.00 -2.39 -0.01 3.13 16 30 H 0.12 3.30 6.30 -2.91 -0.02 3.28 16 31 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 32 H 0.16 1.60 8.05 -2.91 -0.02 1.58 16 33 H 0.07 1.97 7.86 -2.38 -0.02 1.95 16 34 H 0.05 1.47 7.13 -2.38 -0.02 1.46 16 35 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.14 8.09 -2.39 -0.02 1.13 16 37 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 38 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 0.87 8.12 -2.38 -0.02 0.85 16 41 H 0.12 4.12 7.26 -2.39 -0.02 4.10 16 42 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 2.46 8.14 -2.38 -0.02 2.44 16 44 H 0.25 15.72 8.73 -92.71 -0.81 14.92 16 45 H 0.07 2.76 8.09 -2.39 -0.02 2.74 16 46 H 0.05 1.99 3.45 -2.39 -0.01 1.98 16 Total: -1.00 -70.22 346.39 3.52 -66.70 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.75 Total: 18.07 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.24 Total: -0.81 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -4.05 Total: -116.33 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: -0.06 Total: -21.72 kcal Atomic # 14 Polarization: 52.45 SS G_CDS: 1.64 Total: 54.09 kcal Total: -70.22 3.52 -66.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042777458.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.132 kcal (2) G-P(sol) polarization free energy of solvation -70.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds