Wall clock time and date at job start Fri Apr 10 2020 23:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47098 * 2 1 4 4 C 1.53000 * 109.46588 * 177.81555 * 3 2 1 5 5 H 1.09002 * 109.47080 * 305.33575 * 4 3 2 6 6 C 1.53005 * 109.46621 * 185.34031 * 4 3 2 7 7 N 1.46500 * 109.46808 * 179.97438 * 6 4 3 8 8 C 1.34778 * 119.99440 * 179.72293 * 7 6 4 9 9 O 1.21586 * 120.00302 * 0.27685 * 8 7 6 10 10 N 1.34786 * 119.99732 * 180.27821 * 8 7 6 11 11 C 1.47019 * 125.64772 * 359.69199 * 10 8 7 12 12 C 1.54331 * 107.26701 * 178.85165 * 11 10 8 13 13 C 1.55159 * 103.01967 * 338.14245 * 12 11 10 14 14 O 1.42900 * 110.99979 * 277.23449 * 13 12 11 15 15 C 1.50700 * 111.03847 * 153.39631 * 13 12 11 16 16 H 1.07997 * 119.99936 * 6.33035 * 15 13 12 17 17 C 1.37869 * 119.99734 * 186.32779 * 15 13 12 18 18 N 1.31513 * 120.00306 * 0.02562 * 17 15 13 19 19 Si 1.86808 * 119.99910 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46753 * 90.00140 * 19 17 15 21 21 H 1.48498 * 109.47253 * 210.00301 * 19 17 15 22 22 H 1.48497 * 109.47018 * 330.00606 * 19 17 15 23 23 C 1.47416 * 125.64923 * 180.02562 * 10 8 7 24 24 O 1.42894 * 109.47668 * 65.34138 * 4 3 2 25 25 C 1.42904 * 113.99927 * 259.50015 * 24 4 3 26 26 C 1.53002 * 109.46687 * 178.91184 * 25 24 4 27 27 H 1.09008 * 109.46747 * 299.99758 * 1 2 3 28 28 H 1.08996 * 109.47777 * 59.99289 * 1 2 3 29 29 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46496 * 240.00597 * 2 1 3 31 31 H 1.08992 * 109.47071 * 120.00623 * 2 1 3 32 32 H 1.08993 * 109.46977 * 57.81454 * 3 2 1 33 33 H 1.09000 * 109.47008 * 297.81537 * 3 2 1 34 34 H 1.09001 * 109.47188 * 60.00181 * 6 4 3 35 35 H 1.08994 * 109.47253 * 299.99811 * 6 4 3 36 36 H 0.97000 * 120.00512 * 0.02562 * 7 6 4 37 37 H 1.09003 * 109.88355 * 298.39662 * 11 10 8 38 38 H 1.08998 * 109.88485 * 59.55917 * 11 10 8 39 39 H 1.09005 * 110.85171 * 219.67298 * 12 11 10 40 40 H 1.09005 * 110.51487 * 96.44759 * 12 11 10 41 41 H 0.96705 * 113.99916 * 173.65343 * 14 13 12 42 42 H 0.97005 * 120.00004 * 180.02562 * 18 17 15 43 43 H 1.09007 * 110.36742 * 322.93035 * 23 10 8 44 44 H 1.09003 * 110.36882 * 85.13909 * 23 10 8 45 45 H 1.08996 * 109.46585 * 298.91125 * 25 24 4 46 46 H 1.09000 * 109.46934 * 58.91418 * 25 24 4 47 47 H 1.08996 * 109.47559 * 299.99344 * 26 25 24 48 48 H 1.09000 * 109.47242 * 60.00423 * 26 25 24 49 49 H 1.09007 * 109.46729 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5690 1.4427 0.0550 5 1 3.9018 0.8591 0.9133 6 6 4.0742 2.8807 0.1892 7 7 5.5382 2.8809 0.2425 8 6 6.2082 4.0450 0.3550 9 8 5.5974 5.0944 0.4173 10 7 7.5554 4.0457 0.3984 11 6 8.4152 2.8545 0.3394 12 6 9.8783 3.3426 0.3923 13 6 9.7728 4.8157 -0.0835 14 8 9.7478 4.8925 -1.5102 15 6 10.8958 5.6479 0.4798 16 1 11.6903 5.1756 1.0384 17 6 10.9090 7.0123 0.2820 18 7 9.9413 7.5876 -0.3979 19 14 12.3006 8.0440 0.9808 20 1 13.3960 8.1388 -0.0174 21 1 11.7979 9.4056 1.2950 22 1 12.8143 7.4078 2.2204 23 6 8.4105 5.2403 0.5197 24 8 4.0890 0.8652 -1.1442 25 6 4.5024 -0.4953 -1.0023 26 6 5.0135 -1.0158 -2.3472 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6450 1.9675 0.8697 33 1 1.7090 1.9449 -0.9089 34 1 3.6777 3.3213 1.1040 35 1 3.7414 3.4644 -0.6690 36 1 6.0256 2.0437 0.1924 37 1 8.2079 2.2053 1.1900 38 1 8.2394 2.3162 -0.5919 39 1 10.5055 2.7626 -0.2847 40 1 10.2609 3.2932 1.4118 41 1 9.5855 5.7819 -1.8535 42 1 9.9507 8.5475 -0.5374 43 1 7.9866 6.0695 -0.0469 44 1 8.5274 5.5183 1.5672 45 1 5.2999 -0.5573 -0.2619 46 1 3.6561 -1.1001 -0.6764 47 1 4.2160 -0.9539 -3.0876 48 1 5.8597 -0.4111 -2.6731 49 1 5.3293 -2.0535 -2.2389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602345708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:59 Heat of formation + Delta-G solvation = -164.109309 kcal Electronic energy + Delta-G solvation = -27480.356357 eV Core-core repulsion = 23634.041544 eV Total energy + Delta-G solvation = -3846.314813 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 314.204 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.29156 -39.87848 -38.96973 -36.03251 -35.92172 -35.30001 -34.22279 -32.60550 -31.70716 -30.39229 -29.49825 -27.55158 -26.31171 -24.23046 -23.69875 -22.69109 -22.04409 -21.46115 -20.86780 -19.28263 -18.83004 -18.08912 -17.39099 -16.93964 -16.83467 -16.67451 -16.21888 -15.88070 -15.57564 -15.30652 -14.87931 -14.71591 -14.57143 -14.43199 -14.13480 -13.97759 -13.72377 -13.51781 -13.36929 -13.18999 -12.85894 -12.83290 -12.77691 -12.59996 -12.52221 -12.32071 -12.22505 -12.10987 -12.08441 -11.86857 -11.66172 -11.44633 -11.32458 -11.18229 -10.65736 -10.40685 -10.30300 -10.19469 -9.31979 -8.23020 -6.40678 1.42721 1.44610 1.54609 1.68118 2.15898 2.39238 2.69577 3.02721 3.07958 3.68097 3.80382 3.94593 4.00960 4.09211 4.18970 4.20387 4.25592 4.31325 4.34324 4.44390 4.52243 4.55727 4.61506 4.65400 4.74180 4.77803 4.83624 4.92675 4.99895 5.07232 5.07538 5.08069 5.10826 5.27163 5.30410 5.30851 5.37572 5.38648 5.45774 5.47194 5.49847 5.77024 6.05891 6.18364 6.33268 6.66970 7.06323 7.28326 7.35966 7.57206 8.82120 Molecular weight = 314.20amu Principal moments of inertia in cm(-1) A = 0.025725 B = 0.002777 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.158892 B =10078.853975 C =10729.721920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.090 3.910 5 H 0.088 0.912 6 C 0.137 3.863 7 N -0.724 5.724 8 C 0.709 3.291 9 O -0.646 6.646 10 N -0.634 5.634 11 C 0.108 3.892 12 C -0.110 4.110 13 C 0.231 3.769 14 O -0.588 6.588 15 C -0.554 4.554 16 H 0.071 0.929 17 C 0.024 3.976 18 N -0.916 5.916 19 Si 0.965 3.035 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 C 0.128 3.872 24 O -0.397 6.397 25 C 0.045 3.955 26 C -0.152 4.152 27 H 0.057 0.943 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.406 0.594 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.372 0.628 42 H 0.268 0.732 43 H 0.042 0.958 44 H 0.040 0.960 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.049 0.951 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.340 -20.253 2.253 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.171 4.171 4 C 0.032 3.968 5 H 0.106 0.894 6 C 0.012 3.988 7 N -0.381 5.381 8 C 0.411 3.589 9 O -0.529 6.529 10 N -0.370 5.370 11 C -0.014 4.014 12 C -0.147 4.147 13 C 0.191 3.809 14 O -0.395 6.395 15 C -0.593 4.593 16 H 0.089 0.911 17 C -0.177 4.177 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.188 1.188 23 C 0.004 3.996 24 O -0.317 6.317 25 C -0.030 4.030 26 C -0.209 4.209 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.096 0.904 35 H 0.067 0.933 36 H 0.242 0.758 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.220 0.780 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.076 0.924 48 H 0.068 0.932 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.814 -19.906 2.119 24.322 hybrid contribution 0.692 1.471 0.171 1.634 sum -13.122 -18.435 2.290 22.743 Atomic orbital electron populations 1.21764 0.95189 1.02088 1.01889 1.21563 0.96500 0.95521 1.02316 1.22001 0.92990 0.98768 1.03339 1.22333 0.94349 0.91649 0.88445 0.89441 1.21484 0.78200 0.97353 1.01715 1.44786 1.07320 1.06692 1.79284 1.15763 0.80729 0.84369 0.78079 1.90840 1.68038 1.32792 1.61209 1.47863 1.03165 1.10297 1.75721 1.22098 0.90351 0.87092 1.01844 1.22597 0.94944 0.95042 1.02154 1.19887 0.89710 0.92786 0.78504 1.86095 1.95234 1.34993 1.23195 1.21790 1.09129 0.92697 1.35634 0.91128 1.25865 0.98051 0.99226 0.94559 1.69861 1.33180 1.11673 1.40822 0.85445 0.79004 0.77527 0.78983 1.20051 1.21286 1.18771 1.22664 0.91643 0.86419 0.98834 1.87994 1.82462 1.27516 1.33777 1.22852 0.99086 0.82197 0.98911 1.21767 1.01298 1.01598 0.96248 0.92382 0.93140 0.91989 0.91813 0.91096 0.89712 0.91796 0.90425 0.93319 0.75792 0.89170 0.91317 0.89602 0.89110 0.77952 0.92245 0.93971 0.94183 0.92509 0.91382 0.92445 0.93173 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.45 4.94 30.60 0.15 -1.30 16 3 C -0.13 -2.02 4.92 30.60 0.15 -1.87 16 4 C 0.09 1.64 2.36 30.60 0.07 1.71 16 5 H 0.09 1.24 7.70 -2.39 -0.02 1.22 16 6 C 0.14 3.61 5.37 86.38 0.46 4.07 16 7 N -0.72 -22.38 5.41 -478.52 -2.59 -24.96 16 8 C 0.71 30.23 8.49 179.05 1.52 31.75 16 9 O -0.65 -33.54 16.60 -3.99 -0.07 -33.61 16 10 N -0.63 -26.99 3.33 -829.71 -2.76 -29.75 16 11 C 0.11 3.58 6.15 86.73 0.53 4.12 16 12 C -0.11 -4.15 6.13 31.79 0.19 -3.95 16 13 C 0.23 11.37 0.87 -10.14 -0.01 11.36 16 14 O -0.59 -30.89 13.16 -148.98 -1.96 -32.85 16 15 C -0.55 -29.06 8.27 25.60 0.21 -28.85 16 16 H 0.07 3.55 7.79 -2.91 -0.02 3.53 16 17 C 0.02 1.26 5.29 84.65 0.45 1.71 16 18 N -0.92 -51.19 10.69 21.44 0.23 -50.96 16 19 Si 0.97 42.24 29.54 68.60 2.03 44.26 16 20 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 23 C 0.13 6.52 5.38 86.86 0.47 6.98 16 24 O -0.40 -8.22 9.51 -148.98 -1.42 -9.64 16 25 C 0.05 0.66 6.03 71.98 0.43 1.09 16 26 C -0.15 -2.16 10.28 71.98 0.74 -1.42 16 27 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.82 6.35 -2.39 -0.02 0.80 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.41 10.30 7.33 -92.71 -0.68 9.62 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.09 3.03 8.14 -2.38 -0.02 3.01 16 40 H 0.09 3.16 8.03 -2.38 -0.02 3.15 16 41 H 0.37 20.63 7.57 -74.05 -0.56 20.07 16 42 H 0.27 14.41 8.31 -92.70 -0.77 13.64 16 43 H 0.04 2.48 7.33 -2.38 -0.02 2.46 16 44 H 0.04 2.11 8.03 -2.39 -0.02 2.09 16 45 H 0.06 0.71 8.13 -2.39 -0.02 0.69 16 46 H 0.07 0.76 5.86 -2.39 -0.01 0.74 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -69.54 390.36 -0.75 -70.29 By element: Atomic # 1 Polarization: 43.06 SS G_CDS: -0.31 Total: 42.75 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 6.09 Total: 24.47 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -5.12 Total: -105.67 kcal Atomic # 8 Polarization: -72.66 SS G_CDS: -3.44 Total: -76.10 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.54 -0.75 -70.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602345708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.817 kcal (2) G-P(sol) polarization free energy of solvation -69.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds