Wall clock time and date at job start Fri Apr 10 2020 23:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48504 * 109.46977 * 271.82861 * 3 2 1 5 5 H 1.48508 * 109.47099 * 31.82203 * 3 2 1 6 6 H 1.48495 * 109.47595 * 151.82589 * 3 2 1 7 7 C 1.38810 * 120.00686 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99744 * 344.58288 * 7 2 1 9 9 N 1.36938 * 120.00412 * 164.58560 * 7 2 1 10 10 C 1.46491 * 120.00384 * 124.48826 * 9 7 2 11 11 C 1.52997 * 109.47064 * 89.99854 * 10 9 7 12 12 H 1.08998 * 109.47252 * 60.00603 * 11 10 9 13 13 O 1.42898 * 109.47313 * 300.00070 * 11 10 9 14 14 C 1.50704 * 109.47161 * 179.97438 * 11 10 9 15 15 C 1.38244 * 119.98889 * 94.72780 * 14 11 10 16 16 C 1.38203 * 120.02561 * 180.28565 * 15 14 11 17 17 C 1.38385 * 120.01278 * 359.97438 * 16 15 14 18 18 Cl 1.73592 * 120.00900 * 180.02562 * 17 16 15 19 19 C 1.38311 * 119.98486 * 0.02562 * 17 16 15 20 20 C 1.38339 * 119.99693 * 275.00256 * 14 11 10 21 21 Cl 1.73597 * 120.00355 * 359.70091 * 20 14 11 22 22 C 1.46500 * 119.99608 * 304.48773 * 9 7 2 23 23 C 1.53004 * 117.50135 * 3.05428 * 22 9 7 24 24 C 1.53000 * 117.50390 * 294.39168 * 22 9 7 25 25 H 0.96993 * 120.00439 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47249 * 329.99903 * 10 9 7 27 27 H 1.08995 * 109.47293 * 209.99975 * 10 9 7 28 28 H 0.96704 * 113.99946 * 299.99890 * 13 11 10 29 29 H 1.07995 * 119.99115 * 0.25156 * 15 14 11 30 30 H 1.07998 * 119.99647 * 179.97438 * 16 15 14 31 31 H 1.08004 * 120.01325 * 180.02562 * 19 17 16 32 32 H 1.09003 * 115.54844 * 148.72040 * 22 9 7 33 33 H 1.08994 * 117.49834 * 359.97438 * 23 22 9 34 34 H 1.08996 * 117.50084 * 145.02177 * 23 22 9 35 35 H 1.08991 * 117.50262 * 214.98261 * 24 22 9 36 36 H 1.09005 * 117.49235 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4589 2.0688 -1.3994 5 1 1.4672 2.6413 0.7383 6 1 3.5664 1.4296 0.6610 7 6 2.0104 -1.2020 0.0005 8 1 1.4995 -2.1205 0.2496 9 7 3.3428 -1.2235 -0.3147 10 6 4.3075 -1.8073 0.6205 11 6 4.4739 -3.2977 0.3173 12 1 4.8359 -3.4226 -0.7032 13 8 3.2138 -3.9563 0.4597 14 6 5.4668 -3.8982 1.2789 15 6 5.0237 -4.5147 2.4342 16 6 5.9339 -5.0604 3.3195 17 6 7.2894 -4.9905 3.0496 18 17 8.4325 -5.6766 4.1613 19 6 7.7332 -4.3738 1.8938 20 6 6.8215 -3.8274 1.0082 21 17 7.3775 -3.0537 -0.4430 22 6 3.8035 -0.6625 -1.5871 23 6 2.7576 -0.0033 -2.4887 24 6 3.3526 -1.3607 -2.8717 25 1 -0.4850 0.8399 -0.0004 26 1 3.9455 -1.6824 1.6411 27 1 5.2686 -1.3049 0.5118 28 1 2.8312 -3.8863 1.3451 29 1 3.9660 -4.5694 2.6454 30 1 5.5873 -5.5415 4.2221 31 1 8.7909 -4.3194 1.6825 32 1 4.8031 -0.2278 -1.5748 33 1 1.7267 0.0125 -2.1352 34 1 3.0692 0.8646 -3.0697 35 1 4.0553 -1.3852 -3.7045 36 1 2.7135 -2.2379 -2.7699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270350275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:36 Heat of formation + Delta-G solvation = 15.646050 kcal Electronic energy + Delta-G solvation = -21983.318010 eV Core-core repulsion = 18520.998358 eV Total energy + Delta-G solvation = -3462.319652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.92146 -37.68231 -36.91386 -36.52727 -35.97176 -32.80085 -31.91922 -31.09306 -30.99474 -27.45448 -24.36547 -23.09364 -22.78701 -21.52011 -21.02818 -19.75793 -17.90215 -16.89128 -16.35644 -16.22018 -15.40385 -14.87143 -14.74164 -14.36818 -14.10827 -13.99572 -13.91716 -13.36686 -12.91316 -12.54643 -12.32106 -12.04032 -12.02124 -11.71519 -11.34502 -11.21509 -11.15746 -11.07771 -10.75588 -10.53529 -10.42220 -10.39399 -9.93355 -9.78879 -9.38373 -9.11636 -9.10968 -8.72120 -8.38884 -6.43362 -6.00340 -3.70165 0.83022 0.93651 1.68887 2.16930 3.28423 3.38491 3.47505 3.54362 4.49999 4.51128 4.54378 4.72446 4.81402 4.89642 5.04852 5.16482 5.25486 5.33775 5.48878 5.63663 5.79313 5.86324 5.87712 5.96767 6.04913 6.12643 6.17620 6.38971 6.42262 6.54324 6.60882 6.67034 7.07026 7.33875 8.08300 8.14047 8.57096 8.99970 9.64374 10.13035 11.08255 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.004070 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.758664 B = 6877.907131 C = 7414.326627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.305 1.305 6 H -0.272 1.272 7 C -0.279 4.279 8 H 0.079 0.921 9 N -0.561 5.561 10 C 0.130 3.870 11 C 0.121 3.879 12 H 0.109 0.891 13 O -0.535 6.535 14 C -0.087 4.087 15 C -0.090 4.090 16 C -0.101 4.101 17 C -0.035 4.035 18 Cl -0.068 7.068 19 C -0.102 4.102 20 C -0.023 4.023 21 Cl -0.052 7.052 22 C 0.107 3.893 23 C -0.197 4.197 24 C -0.211 4.211 25 H 0.264 0.736 26 H 0.061 0.939 27 H 0.047 0.953 28 H 0.368 0.632 29 H 0.144 0.856 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.085 0.915 33 H 0.120 0.880 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.149 -8.618 4.945 18.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.709 3.291 4 H -0.196 1.196 5 H -0.233 1.233 6 H -0.197 1.197 7 C -0.408 4.408 8 H 0.096 0.904 9 N -0.279 5.279 10 C 0.003 3.997 11 C 0.059 3.941 12 H 0.127 0.873 13 O -0.339 6.339 14 C -0.090 4.090 15 C -0.108 4.108 16 C -0.120 4.120 17 C -0.062 4.062 18 Cl -0.039 7.039 19 C -0.121 4.121 20 C -0.050 4.050 21 Cl -0.023 7.023 22 C -0.001 4.001 23 C -0.235 4.235 24 C -0.252 4.252 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.215 0.785 29 H 0.162 0.838 30 H 0.156 0.844 31 H 0.159 0.841 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 15.219 -8.623 4.317 18.016 hybrid contribution 0.579 1.081 0.467 1.312 sum 15.797 -7.542 4.784 18.147 Atomic orbital electron populations 1.69860 1.06231 1.27002 1.50538 1.25875 0.94956 0.98425 0.95357 0.86871 0.80153 0.83830 0.78274 1.19601 1.23317 1.19714 1.18657 0.82944 0.93393 1.45772 0.90403 1.43388 1.04059 1.67646 1.12818 1.21511 0.93554 0.90058 0.94585 1.21840 0.81240 0.93962 0.97056 0.87304 1.86673 1.34510 1.76535 1.36204 1.21033 0.93687 0.97059 0.97185 1.20919 1.00503 0.96876 0.92504 1.21122 0.90707 0.99785 1.00389 1.20680 0.90677 1.01834 0.92966 1.98371 1.60385 1.83450 1.61666 1.20835 1.00263 0.98439 0.92569 1.20558 0.93022 1.00766 0.90669 1.98392 1.89363 1.79277 1.35276 1.21319 0.94924 0.99994 0.83824 1.23500 1.01836 0.94504 1.03634 1.23366 1.04631 0.96885 1.00304 0.92602 0.92032 0.93439 0.78487 0.83844 0.84361 0.84100 0.89757 0.86187 0.90862 0.91253 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 13.97 55.49 0.78 -25.35 16 2 C 0.06 1.53 3.73 -17.43 -0.07 1.47 16 3 Si 0.88 21.61 24.89 -169.99 -4.23 17.38 16 4 H -0.27 -6.39 5.80 56.52 0.33 -6.06 16 5 H -0.31 -7.70 7.11 56.52 0.40 -7.30 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.28 -7.29 8.73 -15.06 -0.13 -7.42 16 8 H 0.08 2.23 7.39 -52.48 -0.39 1.84 16 9 N -0.56 -12.54 2.00 -165.67 -0.33 -12.87 16 10 C 0.13 2.42 5.41 -4.05 -0.02 2.40 16 11 C 0.12 1.98 2.99 -27.88 -0.08 1.90 16 12 H 0.11 1.92 7.11 -51.93 -0.37 1.55 16 13 O -0.53 -9.48 11.78 -35.23 -0.42 -9.89 16 14 C -0.09 -1.19 5.07 -104.58 -0.53 -1.72 16 15 C -0.09 -1.04 9.30 -39.59 -0.37 -1.41 16 16 C -0.10 -1.05 9.83 -39.54 -0.39 -1.44 16 17 C -0.03 -0.37 6.32 -39.50 -0.25 -0.62 16 18 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.16 16 19 C -0.10 -1.14 9.61 -39.51 -0.38 -1.52 16 20 C -0.02 -0.29 6.31 -39.50 -0.25 -0.54 16 21 Cl -0.05 -0.67 27.18 -51.86 -1.41 -2.08 16 22 C 0.11 2.26 5.16 -67.93 -0.35 1.91 16 23 C -0.20 -4.32 6.70 -26.69 -0.18 -4.49 16 24 C -0.21 -4.25 10.36 -26.69 -0.28 -4.53 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.06 1.16 8.04 -51.93 -0.42 0.74 16 27 H 0.05 0.84 7.85 -51.93 -0.41 0.43 16 28 H 0.37 5.51 7.33 45.56 0.33 5.84 16 29 H 0.14 1.44 6.41 -52.49 -0.34 1.11 16 30 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 31 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 32 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 33 H 0.12 3.05 5.08 -51.93 -0.26 2.79 16 34 H 0.07 1.47 7.86 -51.93 -0.41 1.07 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.09 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 324.24 15.07 4.89 4.89 Total: -1.00 -29.02 324.24 -9.08 -38.10 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.58 Total: 8.00 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -3.27 Total: -16.02 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.44 Total: -38.22 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.42 Total: -9.89 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.23 Total: 17.38 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -2.91 Total: -4.24 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.02 -9.08 -38.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270350275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.748 kcal (2) G-P(sol) polarization free energy of solvation -29.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds