Wall clock time and date at job start Fri Apr 10 2020 23:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86803 * 119.99685 * 2 1 4 4 H 1.48504 * 109.46977 * 271.82861 * 3 2 1 5 5 H 1.48508 * 109.47099 * 31.82203 * 3 2 1 6 6 H 1.48495 * 109.47595 * 151.82589 * 3 2 1 7 7 C 1.38810 * 120.00686 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99744 * 344.58288 * 7 2 1 9 9 N 1.36938 * 120.00412 * 164.58560 * 7 2 1 10 10 C 1.46491 * 120.00384 * 124.48826 * 9 7 2 11 11 C 1.52997 * 109.47064 * 89.99854 * 10 9 7 12 12 H 1.08998 * 109.47252 * 60.00603 * 11 10 9 13 13 O 1.42898 * 109.47313 * 300.00070 * 11 10 9 14 14 C 1.50704 * 109.47161 * 179.97438 * 11 10 9 15 15 C 1.38244 * 119.98889 * 94.72780 * 14 11 10 16 16 C 1.38203 * 120.02561 * 180.28565 * 15 14 11 17 17 C 1.38385 * 120.01278 * 359.97438 * 16 15 14 18 18 Cl 1.73592 * 120.00900 * 180.02562 * 17 16 15 19 19 C 1.38311 * 119.98486 * 0.02562 * 17 16 15 20 20 C 1.38339 * 119.99693 * 275.00256 * 14 11 10 21 21 Cl 1.73597 * 120.00355 * 359.70091 * 20 14 11 22 22 C 1.46500 * 119.99608 * 304.48773 * 9 7 2 23 23 C 1.53004 * 117.50135 * 3.05428 * 22 9 7 24 24 C 1.53000 * 117.50390 * 294.39168 * 22 9 7 25 25 H 0.96993 * 120.00439 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.47249 * 329.99903 * 10 9 7 27 27 H 1.08995 * 109.47293 * 209.99975 * 10 9 7 28 28 H 0.96704 * 113.99946 * 299.99890 * 13 11 10 29 29 H 1.07995 * 119.99115 * 0.25156 * 15 14 11 30 30 H 1.07998 * 119.99647 * 179.97438 * 16 15 14 31 31 H 1.08004 * 120.01325 * 180.02562 * 19 17 16 32 32 H 1.09003 * 115.54844 * 148.72040 * 22 9 7 33 33 H 1.08994 * 117.49834 * 359.97438 * 23 22 9 34 34 H 1.08996 * 117.50084 * 145.02177 * 23 22 9 35 35 H 1.08991 * 117.50262 * 214.98261 * 24 22 9 36 36 H 1.09005 * 117.49235 * 359.97438 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4589 2.0688 -1.3994 5 1 1.4672 2.6413 0.7383 6 1 3.5664 1.4296 0.6610 7 6 2.0104 -1.2020 0.0005 8 1 1.4995 -2.1205 0.2496 9 7 3.3428 -1.2235 -0.3147 10 6 4.3075 -1.8073 0.6205 11 6 4.4739 -3.2977 0.3173 12 1 4.8359 -3.4226 -0.7032 13 8 3.2138 -3.9563 0.4597 14 6 5.4668 -3.8982 1.2789 15 6 5.0237 -4.5147 2.4342 16 6 5.9339 -5.0604 3.3195 17 6 7.2894 -4.9905 3.0496 18 17 8.4325 -5.6766 4.1613 19 6 7.7332 -4.3738 1.8938 20 6 6.8215 -3.8274 1.0082 21 17 7.3775 -3.0537 -0.4430 22 6 3.8035 -0.6625 -1.5871 23 6 2.7576 -0.0033 -2.4887 24 6 3.3526 -1.3607 -2.8717 25 1 -0.4850 0.8399 -0.0004 26 1 3.9455 -1.6824 1.6411 27 1 5.2686 -1.3049 0.5118 28 1 2.8312 -3.8863 1.3451 29 1 3.9660 -4.5694 2.6454 30 1 5.5873 -5.5415 4.2221 31 1 8.7909 -4.3194 1.6825 32 1 4.8031 -0.2278 -1.5748 33 1 1.7267 0.0125 -2.1352 34 1 3.0692 0.8646 -3.0697 35 1 4.0553 -1.3852 -3.7045 36 1 2.7135 -2.2379 -2.7699 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270350275.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:35 Heat of formation + Delta-G solvation = -1.147112 kcal Electronic energy + Delta-G solvation = -21984.046216 eV Core-core repulsion = 18520.998358 eV Total energy + Delta-G solvation = -3463.047858 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.93503 -39.19500 -37.97580 -37.63473 -37.05020 -34.60507 -33.65961 -32.30650 -31.94554 -28.93510 -26.05345 -24.29278 -23.89996 -23.20813 -22.20165 -21.54698 -19.01798 -18.67124 -17.56563 -17.35128 -16.72319 -16.49131 -16.19884 -15.64563 -15.46910 -15.13315 -14.99857 -14.83294 -14.58750 -13.86727 -13.54079 -13.50789 -13.22984 -13.03463 -12.82519 -12.61351 -12.44169 -12.14896 -12.07287 -12.04964 -11.96435 -11.79833 -11.70179 -11.46638 -10.98726 -10.83476 -10.43743 -10.00403 -9.67139 -8.30958 -8.03839 -5.77738 -0.10449 0.04885 0.80543 1.25774 1.44027 1.47389 1.58211 2.36420 2.50474 3.04087 3.11462 3.42105 3.52943 3.68873 3.76521 3.95706 4.12004 4.23535 4.28469 4.32222 4.36301 4.48503 4.54607 4.66634 4.80447 4.90766 4.93552 4.99825 5.04126 5.08563 5.35630 5.37494 5.50883 5.57607 6.04450 6.46871 6.86546 7.15077 7.63738 8.16281 9.02286 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.004070 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.758664 B = 6877.907131 C = 7414.326627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.013 3.987 3 Si 0.933 3.067 4 H -0.255 1.255 5 H -0.317 1.317 6 H -0.265 1.265 7 C -0.260 4.260 8 H 0.042 0.958 9 N -0.574 5.574 10 C 0.129 3.871 11 C 0.136 3.864 12 H 0.097 0.903 13 O -0.556 6.556 14 C -0.104 4.104 15 C -0.091 4.091 16 C -0.096 4.096 17 C -0.034 4.034 18 Cl -0.054 7.054 19 C -0.101 4.101 20 C -0.029 4.029 21 Cl -0.056 7.056 22 C 0.100 3.900 23 C -0.210 4.210 24 C -0.193 4.193 25 H 0.262 0.738 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.377 0.623 29 H 0.154 0.846 30 H 0.163 0.837 31 H 0.157 0.843 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.908 -8.860 5.358 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.185 4.185 3 Si 0.760 3.240 4 H -0.180 1.180 5 H -0.246 1.246 6 H -0.189 1.189 7 C -0.389 4.389 8 H 0.059 0.941 9 N -0.293 5.293 10 C 0.004 3.996 11 C 0.074 3.926 12 H 0.114 0.886 13 O -0.362 6.362 14 C -0.106 4.106 15 C -0.110 4.110 16 C -0.114 4.114 17 C -0.061 4.061 18 Cl -0.025 7.025 19 C -0.121 4.121 20 C -0.056 4.056 21 Cl -0.027 7.027 22 C -0.007 4.007 23 C -0.248 4.248 24 C -0.234 4.234 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.226 0.774 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.175 0.825 32 H 0.130 0.870 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.124 0.876 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 18.024 -8.887 4.732 20.646 hybrid contribution -0.223 1.000 0.388 1.096 sum 17.801 -7.886 5.120 20.132 Atomic orbital electron populations 1.69977 1.07882 1.27429 1.53431 1.26370 0.95246 1.01210 0.95664 0.86019 0.78902 0.80218 0.78835 1.17962 1.24636 1.18939 1.18412 0.84593 0.91886 1.44048 0.94086 1.43470 1.03266 1.68370 1.14185 1.21609 0.93021 0.91536 0.93454 1.21446 0.81430 0.92437 0.97293 0.88577 1.86632 1.35550 1.76749 1.37284 1.20745 0.93359 0.98915 0.97574 1.21088 1.01445 0.96415 0.92015 1.21372 0.90369 0.98955 1.00752 1.20830 0.91178 1.01149 0.92923 1.98383 1.59906 1.83139 1.61085 1.21001 1.00854 0.97893 0.92308 1.20621 0.92917 1.01194 0.90914 1.98386 1.89318 1.79411 1.35610 1.21567 0.95693 1.00039 0.83355 1.23411 1.00071 0.96402 1.04960 1.23298 1.04165 0.94844 1.01053 0.92919 0.92601 0.91949 0.77439 0.82808 0.81964 0.82524 0.86970 0.89976 0.88644 0.87633 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.97 13.97 21.65 0.30 -56.67 16 2 C 0.01 0.73 3.73 84.86 0.32 1.05 16 3 Si 0.93 44.59 24.89 68.60 1.71 46.30 16 4 H -0.25 -11.43 5.80 99.48 0.58 -10.85 16 5 H -0.32 -15.70 7.11 99.48 0.71 -14.99 16 6 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.26 -13.85 8.73 84.03 0.73 -13.11 16 8 H 0.04 2.47 7.39 -2.91 -0.02 2.45 16 9 N -0.57 -25.33 2.00 -678.04 -1.35 -26.69 16 10 C 0.13 4.69 5.41 86.38 0.47 5.16 16 11 C 0.14 4.36 2.99 29.85 0.09 4.45 16 12 H 0.10 3.32 7.11 -2.39 -0.02 3.31 16 13 O -0.56 -19.92 11.78 -148.98 -1.76 -21.67 16 14 C -0.10 -2.68 5.07 -19.84 -0.10 -2.78 16 15 C -0.09 -1.96 9.30 22.26 0.21 -1.75 16 16 C -0.10 -1.74 9.83 22.30 0.22 -1.52 16 17 C -0.03 -0.64 6.32 22.32 0.14 -0.49 16 18 Cl -0.05 -0.90 28.96 -2.72 -0.08 -0.97 16 19 C -0.10 -2.03 9.61 22.31 0.21 -1.81 16 20 C -0.03 -0.70 6.31 22.32 0.14 -0.55 16 21 Cl -0.06 -1.35 27.18 -2.72 -0.07 -1.42 16 22 C 0.10 4.06 5.16 44.99 0.23 4.29 16 23 C -0.21 -8.94 6.70 30.62 0.21 -8.73 16 24 C -0.19 -7.46 10.36 30.62 0.32 -7.14 16 25 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 26 H 0.06 2.07 8.04 -2.38 -0.02 2.05 16 27 H 0.06 2.08 7.85 -2.39 -0.02 2.06 16 28 H 0.38 11.51 7.33 -74.05 -0.54 10.96 16 29 H 0.15 2.89 6.41 -2.91 -0.02 2.87 16 30 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 31 H 0.16 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 33 H 0.08 4.20 5.08 -2.39 -0.01 4.19 16 34 H 0.10 3.59 7.86 -2.39 -0.02 3.57 16 35 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 36 H 0.06 2.88 8.14 -2.38 -0.02 2.86 16 Total: -1.00 -63.28 324.24 2.38 -60.90 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.45 Total: 23.18 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 3.18 Total: -22.95 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -1.05 Total: -83.36 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -1.76 Total: -21.67 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.71 Total: 46.30 kcal Atomic # 17 Polarization: -2.24 SS G_CDS: -0.15 Total: -2.39 kcal Total: -63.28 2.38 -60.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270350275.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.754 kcal (2) G-P(sol) polarization free energy of solvation -63.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds