Wall clock time and date at job start Fri Apr 10 2020 23:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.98806 * 2 1 4 4 C 1.38195 * 120.01218 * 180.02562 * 3 2 1 5 5 C 1.38374 * 119.98867 * 359.74860 * 4 3 2 6 6 Cl 1.73595 * 120.01531 * 180.27806 * 5 4 3 7 7 C 1.38331 * 119.96913 * 0.54930 * 5 4 3 8 8 S 1.76201 * 120.00360 * 179.70596 * 7 5 4 9 9 O 1.42101 * 106.40089 * 181.18798 * 8 7 5 10 10 O 1.42101 * 106.40481 * 48.26411 * 8 7 5 11 11 N 1.65602 * 107.21548 * 294.72473 * 8 7 5 12 12 C 1.36935 * 120.00191 * 90.00247 * 11 8 7 13 13 H 1.08000 * 120.00362 * 232.62451 * 12 11 8 14 14 C 1.38815 * 119.99782 * 52.62416 * 12 11 8 15 15 N 1.31615 * 120.00164 * 20.90144 * 14 12 11 16 16 Si 1.86798 * 119.99693 * 200.90294 * 14 12 11 17 17 H 1.48503 * 109.47021 * 269.99984 * 16 14 12 18 18 H 1.48504 * 109.47442 * 29.99850 * 16 14 12 19 19 H 1.48502 * 109.47231 * 150.00151 * 16 14 12 20 20 C 1.46505 * 120.00010 * 269.99879 * 11 8 7 21 21 C 1.52994 * 117.49722 * 183.42655 * 20 11 8 22 22 C 1.53003 * 117.49664 * 114.76708 * 20 11 8 23 23 C 1.38226 * 119.98848 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46983 * 269.98023 * 1 2 3 25 25 H 1.08998 * 109.46968 * 29.97796 * 1 2 3 26 26 H 1.08996 * 109.47010 * 149.97611 * 1 2 3 27 27 H 1.07999 * 119.99107 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.00290 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00175 * 174.95787 * 15 14 12 30 30 H 1.08997 * 115.54918 * 329.10417 * 20 11 8 31 31 H 1.08995 * 117.50178 * 0.02562 * 21 20 11 32 32 H 1.09007 * 117.49403 * 145.02296 * 21 20 11 33 33 H 1.08999 * 117.50007 * 214.98135 * 22 20 11 34 34 H 1.09003 * 117.49773 * 0.02562 * 22 20 11 35 35 H 1.07997 * 119.98723 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5800 1.1981 -0.0005 5 6 4.2721 -0.0001 0.0042 6 17 6.0081 -0.0001 0.0108 7 6 3.5802 -1.1978 -0.0020 8 16 4.4606 -2.7241 -0.0039 9 8 3.4807 -3.7526 -0.0388 10 8 5.4437 -2.6215 1.0171 11 7 5.2836 -2.8134 -1.4381 12 6 6.5552 -2.3138 -1.5302 13 1 6.8038 -1.6101 -2.3109 14 6 7.5248 -2.7117 -0.6200 15 7 7.3755 -3.8331 0.0526 16 14 9.0416 -1.6554 -0.3497 17 1 10.1100 -2.0729 -1.2930 18 1 8.7009 -0.2297 -0.5875 19 1 9.5200 -1.8240 1.0460 20 6 4.6513 -3.4272 -2.6085 21 6 5.4913 -3.5520 -3.8811 22 6 4.3594 -2.5241 -3.8086 23 6 2.1979 -1.1972 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6577 2.1326 0.0004 28 1 4.1197 2.1336 -0.0001 29 1 8.0853 -4.1485 0.6336 30 1 3.9402 -4.2251 -2.3944 31 1 6.5145 -3.1780 -3.8475 32 1 5.3326 -4.4321 -4.5045 33 1 3.4566 -2.7282 -4.3843 34 1 4.6382 -1.4734 -3.7275 35 1 1.6575 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270803121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:40 Heat of formation + Delta-G solvation = -14.073642 kcal Electronic energy + Delta-G solvation = -23183.865196 eV Core-core repulsion = 19722.300508 eV Total energy + Delta-G solvation = -3461.564688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.91719 -37.14394 -35.98162 -35.38611 -34.05021 -33.27605 -32.23844 -30.80109 -30.59788 -26.57021 -24.94973 -22.83205 -21.58098 -21.36311 -20.54024 -18.79202 -17.32890 -16.41852 -16.05642 -15.61267 -15.22316 -15.06133 -14.24594 -14.00618 -13.92933 -13.68680 -13.26279 -13.19833 -12.50785 -12.35131 -12.26578 -11.84991 -11.61344 -11.42870 -11.30850 -10.97822 -10.84726 -10.68459 -10.57170 -10.42331 -10.35696 -10.26877 -10.10604 -9.92351 -9.43633 -9.31563 -8.88727 -8.62068 -8.12532 -7.49373 -6.52789 -4.12703 1.26710 1.54436 1.99608 2.67755 3.19053 3.24400 3.29928 3.77417 4.08363 4.57417 4.72206 4.94576 4.97698 5.00517 5.24515 5.41206 5.44115 5.63719 5.64142 5.74319 5.79627 5.85068 5.85489 6.11866 6.15846 6.25634 6.31561 6.39701 6.42479 6.63476 6.67118 6.77987 6.99530 7.12401 7.38158 7.53848 8.19993 8.88886 9.32142 10.53286 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.007882 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.668306 B = 3551.343598 C = 4216.004327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.119 4.119 3 C -0.083 4.083 4 C -0.140 4.140 5 C 0.043 3.957 6 Cl -0.023 7.023 7 C -0.651 4.651 8 S 2.550 3.450 9 O -1.015 7.015 10 O -0.933 6.933 11 N -0.782 5.782 12 C -0.257 4.257 13 H 0.081 0.919 14 C 0.071 3.929 15 N -0.775 5.775 16 Si 0.900 3.100 17 H -0.272 1.272 18 H -0.259 1.259 19 H -0.275 1.275 20 C 0.099 3.901 21 C -0.161 4.161 22 C -0.214 4.214 23 C -0.028 4.028 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.129 0.871 29 H 0.280 0.720 30 H 0.117 0.883 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 7.436 -3.688 10.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.120 4.120 3 C -0.101 4.101 4 C -0.159 4.159 5 C 0.015 3.985 6 Cl 0.006 6.994 7 C -0.726 4.726 8 S 2.649 3.351 9 O -1.005 7.005 10 O -0.921 6.921 11 N -0.603 5.603 12 C -0.406 4.406 13 H 0.098 0.902 14 C -0.148 4.148 15 N -0.411 5.411 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.183 1.183 19 H -0.200 1.200 20 C -0.010 4.010 21 C -0.200 4.200 22 C -0.254 4.254 23 C -0.047 4.047 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.147 0.853 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.127 0.873 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.560 6.792 -2.635 9.804 hybrid contribution 0.506 1.292 0.093 1.391 sum -6.055 8.084 -2.542 10.415 Atomic orbital electron populations 1.20750 0.91036 1.02697 1.02177 1.20052 0.96173 0.93460 1.02313 1.21018 0.93508 0.97480 0.98105 1.21097 0.94347 0.96885 1.03608 1.20715 0.87511 0.93569 0.96731 1.98496 1.06617 1.98410 1.95844 1.32549 1.05889 1.23961 1.10186 1.11253 0.72195 0.74403 0.77277 1.93273 1.63117 1.56269 1.87839 1.93457 1.56152 1.85454 1.57004 1.52345 1.18500 1.64614 1.24859 1.18883 0.83035 1.23057 1.15637 0.90165 1.25627 0.98794 0.94597 0.95800 1.69767 1.32828 1.16888 1.21572 0.86313 0.81431 0.81157 0.78560 1.19800 1.18329 1.19991 1.21371 0.99620 0.97484 0.82501 1.23067 0.97624 0.99913 0.99398 1.23366 0.99745 0.97592 1.04726 1.20809 0.92110 0.98179 0.93626 0.91362 0.91723 0.91353 0.85692 0.85289 0.90912 0.86543 0.87332 0.89791 0.89844 0.89115 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.27 10.01 36.01 0.36 -0.91 16 2 C -0.12 -1.88 5.88 -104.62 -0.62 -2.49 16 3 C -0.08 -1.23 9.70 -39.59 -0.38 -1.61 16 4 C -0.14 -2.35 9.83 -39.55 -0.39 -2.74 16 5 C 0.04 0.87 6.30 -39.50 -0.25 0.62 16 6 Cl -0.02 -0.50 20.99 -51.86 -1.09 -1.59 16 7 C -0.65 -14.24 5.91 -39.55 -0.23 -14.48 16 8 S 2.55 64.64 4.96 -107.50 -0.53 64.11 16 9 O -1.02 -27.11 15.80 -57.17 -0.90 -28.01 16 10 O -0.93 -26.15 12.76 -57.17 -0.73 -26.88 16 11 N -0.78 -18.68 3.00 -53.42 -0.16 -18.84 16 12 C -0.26 -6.18 4.89 -15.06 -0.07 -6.26 16 13 H 0.08 1.83 7.67 -52.49 -0.40 1.43 16 14 C 0.07 1.78 3.73 -17.43 -0.07 1.71 16 15 N -0.78 -21.06 11.63 55.49 0.65 -20.42 16 16 Si 0.90 19.74 27.87 -169.99 -4.74 15.00 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.40 6.64 56.52 0.38 -5.02 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 C 0.10 2.07 6.32 -67.93 -0.43 1.64 16 21 C -0.16 -2.87 9.83 -26.70 -0.26 -3.13 16 22 C -0.21 -3.72 10.36 -26.69 -0.28 -4.00 16 23 C -0.03 -0.54 9.20 -39.59 -0.36 -0.90 16 24 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 29 H 0.28 7.20 8.32 -40.82 -0.34 6.86 16 30 H 0.12 2.43 7.46 -51.93 -0.39 2.05 16 31 H 0.11 2.03 6.92 -51.93 -0.36 1.68 16 32 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 35 H 0.14 2.57 7.33 -52.49 -0.38 2.18 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -30.45 312.40 -9.85 -40.30 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -4.07 Total: 4.16 kcal Atomic # 6 Polarization: -29.57 SS G_CDS: -2.98 Total: -32.55 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.49 Total: -39.25 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -1.63 Total: -54.89 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.74 Total: 15.00 kcal Atomic # 16 Polarization: 64.64 SS G_CDS: -0.53 Total: 64.11 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.09 Total: -1.59 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.45 -9.85 -40.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270803121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.228 kcal (2) G-P(sol) polarization free energy of solvation -30.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds