Wall clock time and date at job start Fri Apr 10 2020 23:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38262 * 119.98806 * 2 1 4 4 C 1.38195 * 120.01218 * 180.02562 * 3 2 1 5 5 C 1.38374 * 119.98867 * 359.74860 * 4 3 2 6 6 Cl 1.73595 * 120.01531 * 180.27806 * 5 4 3 7 7 C 1.38331 * 119.96913 * 0.54930 * 5 4 3 8 8 S 1.76201 * 120.00360 * 179.70596 * 7 5 4 9 9 O 1.42101 * 106.40089 * 181.18798 * 8 7 5 10 10 O 1.42101 * 106.40481 * 48.26411 * 8 7 5 11 11 N 1.65602 * 107.21548 * 294.72473 * 8 7 5 12 12 C 1.36935 * 120.00191 * 90.00247 * 11 8 7 13 13 H 1.08000 * 120.00362 * 232.62451 * 12 11 8 14 14 C 1.38815 * 119.99782 * 52.62416 * 12 11 8 15 15 N 1.31615 * 120.00164 * 20.90144 * 14 12 11 16 16 Si 1.86798 * 119.99693 * 200.90294 * 14 12 11 17 17 H 1.48503 * 109.47021 * 269.99984 * 16 14 12 18 18 H 1.48504 * 109.47442 * 29.99850 * 16 14 12 19 19 H 1.48502 * 109.47231 * 150.00151 * 16 14 12 20 20 C 1.46505 * 120.00010 * 269.99879 * 11 8 7 21 21 C 1.52994 * 117.49722 * 183.42655 * 20 11 8 22 22 C 1.53003 * 117.49664 * 114.76708 * 20 11 8 23 23 C 1.38226 * 119.98848 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46983 * 269.98023 * 1 2 3 25 25 H 1.08998 * 109.46968 * 29.97796 * 1 2 3 26 26 H 1.08996 * 109.47010 * 149.97611 * 1 2 3 27 27 H 1.07999 * 119.99107 * 0.02562 * 3 2 1 28 28 H 1.08003 * 120.00290 * 180.02562 * 4 3 2 29 29 H 0.97001 * 120.00175 * 174.95787 * 15 14 12 30 30 H 1.08997 * 115.54918 * 329.10417 * 20 11 8 31 31 H 1.08995 * 117.50178 * 0.02562 * 21 20 11 32 32 H 1.09007 * 117.49403 * 145.02296 * 21 20 11 33 33 H 1.08999 * 117.50007 * 214.98135 * 22 20 11 34 34 H 1.09003 * 117.49773 * 0.02562 * 22 20 11 35 35 H 1.07997 * 119.98723 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1975 0.0000 4 6 3.5800 1.1981 -0.0005 5 6 4.2721 -0.0001 0.0042 6 17 6.0081 -0.0001 0.0108 7 6 3.5802 -1.1978 -0.0020 8 16 4.4606 -2.7241 -0.0039 9 8 3.4807 -3.7526 -0.0388 10 8 5.4437 -2.6215 1.0171 11 7 5.2836 -2.8134 -1.4381 12 6 6.5552 -2.3138 -1.5302 13 1 6.8038 -1.6101 -2.3109 14 6 7.5248 -2.7117 -0.6200 15 7 7.3755 -3.8331 0.0526 16 14 9.0416 -1.6554 -0.3497 17 1 10.1100 -2.0729 -1.2930 18 1 8.7009 -0.2297 -0.5875 19 1 9.5200 -1.8240 1.0460 20 6 4.6513 -3.4272 -2.6085 21 6 5.4913 -3.5520 -3.8811 22 6 4.3594 -2.5241 -3.8086 23 6 2.1979 -1.1972 -0.0005 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6577 2.1326 0.0004 28 1 4.1197 2.1336 -0.0001 29 1 8.0853 -4.1485 0.6336 30 1 3.9402 -4.2251 -2.3944 31 1 6.5145 -3.1780 -3.8475 32 1 5.3326 -4.4321 -4.5045 33 1 3.4566 -2.7282 -4.3843 34 1 4.6382 -1.4734 -3.7275 35 1 1.6575 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270803121.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:39 Heat of formation + Delta-G solvation = -33.297308 kcal Electronic energy + Delta-G solvation = -23184.698797 eV Core-core repulsion = 19722.300508 eV Total energy + Delta-G solvation = -3462.398289 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.048 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.27210 -38.75752 -37.74045 -37.17525 -36.06150 -35.07999 -33.48567 -32.42152 -32.17985 -27.71978 -26.80493 -24.25461 -22.99998 -22.71181 -22.19855 -20.64844 -18.96657 -18.12569 -17.75041 -17.25606 -16.85918 -16.67913 -15.99605 -15.48026 -15.30722 -15.11823 -14.81896 -14.59473 -14.09541 -13.80823 -13.50862 -13.34733 -13.12558 -13.07008 -12.92275 -12.55494 -12.42582 -12.37834 -12.23393 -12.16341 -12.11721 -11.97137 -11.82282 -11.56593 -11.11941 -10.92472 -10.49196 -10.26338 -9.51548 -9.25945 -8.41506 -6.03729 -0.18043 0.15510 0.18296 1.09045 1.44174 1.50462 1.58304 2.26719 2.41478 2.83573 3.05300 3.21564 3.47034 3.73846 3.86553 4.09495 4.18433 4.23359 4.30677 4.38009 4.41460 4.55632 4.68449 4.81946 4.88285 4.91937 4.95820 5.07234 5.11009 5.19483 5.28927 5.41880 5.47547 5.56031 5.83649 5.84804 6.30247 7.03969 7.48029 8.65118 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.015409 B = 0.007882 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.668306 B = 3551.343598 C = 4216.004327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C -0.066 4.066 4 C -0.135 4.135 5 C 0.019 3.981 6 Cl -0.045 7.045 7 C -0.677 4.677 8 S 2.551 3.449 9 O -1.045 7.045 10 O -0.972 6.972 11 N -0.792 5.792 12 C -0.249 4.249 13 H 0.091 0.909 14 C 0.035 3.965 15 N -0.822 5.822 16 Si 0.937 3.063 17 H -0.252 1.252 18 H -0.243 1.243 19 H -0.291 1.291 20 C 0.055 3.945 21 C -0.148 4.148 22 C -0.185 4.185 23 C -0.050 4.050 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.069 0.931 27 H 0.178 0.822 28 H 0.159 0.841 29 H 0.277 0.723 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.274 10.503 -5.288 14.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.084 4.084 4 C -0.154 4.154 5 C -0.009 4.009 6 Cl -0.016 7.016 7 C -0.757 4.757 8 S 2.654 3.346 9 O -1.035 7.035 10 O -0.961 6.961 11 N -0.614 5.614 12 C -0.398 4.398 13 H 0.108 0.892 14 C -0.179 4.179 15 N -0.459 5.459 16 Si 0.760 3.240 17 H -0.176 1.176 18 H -0.167 1.167 19 H -0.217 1.217 20 C -0.053 4.053 21 C -0.187 4.187 22 C -0.225 4.225 23 C -0.070 4.070 24 H 0.102 0.898 25 H 0.114 0.886 26 H 0.088 0.912 27 H 0.195 0.805 28 H 0.177 0.823 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.390 9.820 -4.277 13.605 hybrid contribution 0.852 0.443 0.581 1.122 sum -7.538 10.263 -3.697 13.259 Atomic orbital electron populations 1.20878 0.87658 1.04438 1.03669 1.20540 0.98540 0.92320 0.99588 1.21626 0.92733 0.99135 0.94908 1.21515 0.95493 0.96479 1.01957 1.20887 0.86500 0.94583 0.98923 1.98471 1.08551 1.98456 1.96138 1.31956 1.07079 1.22785 1.13926 1.10637 0.71842 0.74870 0.77221 1.93212 1.63809 1.58230 1.88257 1.93399 1.57599 1.86452 1.58643 1.52222 1.18609 1.65367 1.25229 1.19055 0.82883 1.22528 1.15304 0.89156 1.26329 1.01138 0.94952 0.95520 1.69864 1.33820 1.18941 1.23313 0.85730 0.79470 0.80882 0.77924 1.17638 1.16706 1.21668 1.21573 1.01616 0.99317 0.82807 1.23145 0.97127 1.01150 0.97258 1.23379 1.00594 0.96873 1.01646 1.20939 0.91258 0.99746 0.95010 0.89823 0.88559 0.91158 0.80501 0.82345 0.91347 0.87672 0.88351 0.87021 0.86835 0.89476 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 26. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.05 10.01 71.24 0.71 -1.33 16 2 C -0.11 -3.06 5.88 -19.86 -0.12 -3.17 16 3 C -0.07 -1.64 9.70 22.27 0.22 -1.42 16 4 C -0.14 -4.10 9.83 22.29 0.22 -3.88 16 5 C 0.02 0.76 6.30 22.32 0.14 0.90 16 6 Cl -0.05 -1.95 20.99 -2.72 -0.06 -2.01 16 7 C -0.68 -29.90 5.91 22.29 0.13 -29.77 16 8 S 2.55 134.85 4.96 -56.49 -0.28 134.57 16 9 O -1.05 -58.81 15.80 -128.00 -2.02 -60.83 16 10 O -0.97 -57.41 12.76 -128.00 -1.63 -59.04 16 11 N -0.79 -38.90 3.00 -322.94 -0.97 -39.87 16 12 C -0.25 -12.20 4.89 84.03 0.41 -11.79 16 13 H 0.09 4.13 7.67 -2.91 -0.02 4.10 16 14 C 0.04 1.82 3.73 84.86 0.32 2.14 16 15 N -0.82 -46.85 11.63 21.65 0.25 -46.60 16 16 Si 0.94 40.77 27.87 68.60 1.91 42.68 16 17 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 18 H -0.24 -9.84 6.64 99.48 0.66 -9.18 16 19 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 20 C 0.06 2.32 6.32 44.99 0.28 2.61 16 21 C -0.15 -5.10 9.83 30.62 0.30 -4.80 16 22 C -0.19 -6.11 10.36 30.62 0.32 -5.79 16 23 C -0.05 -1.90 9.20 22.26 0.20 -1.69 16 24 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.10 1.24 8.08 -2.39 -0.02 1.22 16 26 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 27 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.16 3.80 8.06 -2.91 -0.02 3.77 16 29 H 0.28 15.07 8.32 -92.71 -0.77 14.30 16 30 H 0.11 4.57 7.46 -2.39 -0.02 4.55 16 31 H 0.10 3.61 6.92 -2.39 -0.02 3.59 16 32 H 0.11 3.19 8.14 -2.38 -0.02 3.17 16 33 H 0.11 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.13 4.93 7.33 -2.91 -0.02 4.91 16 Total: -1.00 -70.78 312.40 1.40 -69.37 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 1.06 Total: 19.72 kcal Atomic # 6 Polarization: -61.14 SS G_CDS: 3.14 Total: -58.00 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -0.72 Total: -86.46 kcal Atomic # 8 Polarization: -116.22 SS G_CDS: -3.66 Total: -119.87 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 1.91 Total: 42.68 kcal Atomic # 16 Polarization: 134.85 SS G_CDS: -0.28 Total: 134.57 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -0.06 Total: -2.01 kcal Total: -70.78 1.40 -69.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270803121.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.077 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds