Wall clock time and date at job start Fri Apr 10 2020 23:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99805 * 2 1 4 4 H 1.48498 * 109.47005 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47132 * 299.99913 * 3 2 1 6 6 H 1.48499 * 109.47001 * 60.00093 * 3 2 1 7 7 C 1.37875 * 120.00237 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00416 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99799 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47018 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.47046 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.53991 * 68.37327 * 11 10 9 13 13 O 1.42098 * 110.54191 * 291.61982 * 11 10 9 14 14 N 1.65603 * 104.44655 * 179.97438 * 11 10 9 15 15 C 1.46499 * 119.99791 * 65.00242 * 14 11 10 16 16 C 1.50705 * 109.46730 * 164.99886 * 15 14 11 17 17 C 1.34331 * 125.80755 * 94.99746 * 16 15 14 18 18 N 1.38926 * 107.12220 * 179.73806 * 17 16 15 19 19 C 1.37486 * 139.53714 * 180.21625 * 18 17 16 20 20 C 1.30909 * 116.32362 * 180.02562 * 19 18 17 21 21 S 1.75773 * 109.81852 * 359.97438 * 20 19 18 22 22 C 1.35147 * 106.52943 * 0.24591 * 18 17 16 23 23 N 1.32356 * 108.82339 * 359.97438 * 22 18 17 24 24 H 0.97008 * 120.00215 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47568 * 59.99620 * 9 7 2 26 26 H 1.09000 * 109.47022 * 299.99307 * 9 7 2 27 27 H 1.08996 * 109.47322 * 60.00001 * 10 9 7 28 28 H 1.09005 * 109.47139 * 299.99535 * 10 9 7 29 29 H 0.97001 * 119.99784 * 244.99599 * 14 11 10 30 30 H 1.08992 * 109.47563 * 44.99992 * 15 14 11 31 31 H 1.08996 * 109.46953 * 284.99178 * 15 14 11 32 32 H 1.08002 * 126.44106 * 0.02562 * 17 16 15 33 33 H 1.08003 * 121.83610 * 0.04928 * 19 18 17 34 34 H 1.08004 * 125.08820 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3383 -5.2330 0.0013 12 8 0.6639 -5.4200 -1.2354 13 8 0.6648 -5.4194 1.2386 14 7 2.5206 -6.3926 0.0005 15 6 3.4197 -6.5227 1.1498 16 6 4.1398 -7.8446 1.0771 17 6 5.3580 -8.0480 0.5488 18 7 5.6450 -9.3998 0.6911 19 6 6.6524 -10.2909 0.4059 20 6 6.4431 -11.5350 0.7555 21 16 4.8655 -11.6829 1.5164 22 6 4.5751 -9.9581 1.2994 23 7 3.6730 -9.0164 1.5258 24 1 -0.4851 0.8401 0.0004 25 1 0.6247 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 2.6176 -6.9858 -0.7608 30 1 2.8404 -6.4748 2.0717 31 1 4.1474 -5.7114 1.1353 32 1 5.9965 -7.3002 0.1021 33 1 7.5663 -9.9815 -0.0794 34 1 7.1361 -12.3487 0.5996 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271082284.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:44 Heat of formation + Delta-G solvation = -6.008649 kcal Electronic energy + Delta-G solvation = -20751.354460 eV Core-core repulsion = 17324.475954 eV Total energy + Delta-G solvation = -3426.878506 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.050 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.67165 -38.21379 -37.93832 -36.98828 -35.85881 -35.85209 -33.08657 -31.77526 -30.69555 -27.55634 -26.77641 -25.04715 -23.56644 -21.88933 -21.56930 -20.30640 -19.32528 -19.07827 -18.26446 -17.52861 -17.07011 -16.97222 -16.80392 -16.49659 -16.05087 -15.73086 -15.31448 -14.99731 -14.51203 -14.46902 -14.24028 -13.85741 -13.67250 -13.17963 -13.09277 -13.01250 -12.92046 -12.74206 -12.70156 -12.20449 -12.20066 -12.06997 -11.70509 -11.52721 -11.26863 -11.11301 -10.62704 -10.40110 -9.89107 -8.71944 -8.22848 -6.36537 -0.67883 -0.12433 -0.02904 0.74912 1.26303 1.43614 1.44282 1.49393 1.57489 1.60420 2.12056 2.40865 2.85533 3.11069 3.29728 3.34481 3.49324 4.02532 4.11535 4.19230 4.24591 4.36999 4.44291 4.58034 4.66972 4.81057 4.86258 5.06080 5.31934 5.33539 5.36003 5.72383 5.86111 6.05831 6.09779 6.67180 6.78206 7.33646 8.89793 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.029179 B = 0.002587 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.358032 B =10820.582301 C =11436.444174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.081 0.919 9 C 0.017 3.983 10 C -0.580 4.580 11 S 2.617 3.383 12 O -1.002 7.002 13 O -1.001 7.001 14 N -1.105 6.105 15 C 0.193 3.807 16 C 0.010 3.990 17 C -0.013 4.013 18 N -0.410 5.410 19 C 0.034 3.966 20 C -0.200 4.200 21 S 0.175 5.825 22 C 0.103 3.897 23 N -0.495 5.495 24 H 0.266 0.734 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.421 0.579 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.228 0.772 33 H 0.223 0.777 34 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.951 -23.635 0.215 32.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.099 0.901 9 C -0.022 4.022 10 C -0.713 4.713 11 S 2.715 3.285 12 O -0.992 6.992 13 O -0.991 6.991 14 N -0.866 5.866 15 C 0.067 3.933 16 C -0.122 4.122 17 C -0.148 4.148 18 N -0.089 5.089 19 C -0.093 4.093 20 C -0.336 4.336 21 S 0.423 5.577 22 C -0.263 4.263 23 N -0.219 5.219 24 H 0.075 0.925 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.168 0.832 28 H 0.168 0.832 29 H 0.256 0.744 30 H 0.096 0.904 31 H 0.144 0.856 32 H 0.244 0.756 33 H 0.239 0.761 34 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 19.430 -24.804 1.282 31.534 hybrid contribution 1.502 2.142 -1.130 2.850 sum 20.932 -22.662 0.152 30.851 Atomic orbital electron populations 1.70122 1.08180 1.28178 1.51198 1.26149 0.95834 1.04005 0.94559 0.85246 0.79321 0.77969 0.77582 1.17551 1.20624 1.20630 1.21572 0.94158 0.90557 1.50989 0.90110 1.18856 0.93756 0.93226 0.96369 1.30288 1.12659 1.15245 1.13079 1.04554 0.74659 0.76734 0.72546 1.93496 1.73060 1.86016 1.46628 1.93502 1.72886 1.85572 1.47151 1.55323 1.52421 1.50898 1.27953 1.19747 0.92572 0.92388 0.88568 1.20696 0.94237 0.93771 1.03470 1.23180 0.99675 0.83008 1.08960 1.44235 1.14199 1.08801 1.41706 1.21098 0.95006 0.88326 1.04861 1.25679 1.01104 1.00758 1.06101 1.84943 1.14752 0.91937 1.66048 1.26774 0.90175 1.02259 1.07090 1.70425 1.28461 0.98794 1.24265 0.92513 0.97653 0.97560 0.83157 0.83150 0.74370 0.90358 0.85588 0.75582 0.76090 0.74499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 13.29 21.45 0.28 -56.99 16 2 C -0.01 -0.42 5.46 84.66 0.46 0.04 16 3 Si 0.98 42.91 29.54 68.60 2.03 44.94 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 6 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.53 -29.05 9.11 25.60 0.23 -28.81 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.96 16 9 C 0.02 0.87 4.98 29.85 0.15 1.02 16 10 C -0.58 -20.92 6.01 71.98 0.43 -20.48 16 11 S 2.62 95.99 5.46 -56.49 -0.31 95.68 16 12 O -1.00 -43.50 18.08 -127.65 -2.31 -45.81 16 13 O -1.00 -44.38 17.50 -127.65 -2.23 -46.62 16 14 N -1.11 -29.55 5.88 -190.80 -1.12 -30.67 16 15 C 0.19 4.49 6.66 85.63 0.57 5.06 16 16 C 0.01 0.23 6.45 41.36 0.27 0.50 16 17 C -0.01 -0.22 11.93 82.67 0.99 0.77 16 18 N -0.41 -6.76 3.19 -355.67 -1.13 -7.90 16 19 C 0.03 0.25 11.26 83.86 0.94 1.20 16 20 C -0.20 -1.09 11.11 67.87 0.75 -0.34 16 21 S 0.17 2.50 23.37 -56.49 -1.32 1.18 16 22 C 0.10 2.37 8.93 179.68 1.60 3.97 16 23 N -0.49 -14.57 11.33 -184.82 -2.09 -16.66 16 24 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 25 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.15 4.48 8.14 -2.39 -0.02 4.46 16 28 H 0.15 4.56 8.14 -2.39 -0.02 4.54 16 29 H 0.42 10.16 8.61 -96.74 -0.83 9.32 16 30 H 0.08 2.13 7.69 -2.39 -0.02 2.11 16 31 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.23 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.22 -0.22 8.06 -2.91 -0.02 -0.24 16 34 H 0.24 -0.85 8.06 -2.91 -0.02 -0.87 16 Total: -1.00 -89.05 328.08 -1.49 -90.54 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.31 Total: 9.37 kcal Atomic # 6 Polarization: -43.48 SS G_CDS: 6.40 Total: -37.07 kcal Atomic # 7 Polarization: -108.15 SS G_CDS: -4.06 Total: -112.21 kcal Atomic # 8 Polarization: -87.88 SS G_CDS: -4.54 Total: -92.43 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Atomic # 16 Polarization: 98.48 SS G_CDS: -1.63 Total: 96.86 kcal Total: -89.05 -1.49 -90.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271082284.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.533 kcal (2) G-P(sol) polarization free energy of solvation -89.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds