Wall clock time and date at job start Fri Apr 10 2020 23:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21301 * 120.00018 * 2 1 4 4 C 1.46848 * 119.99907 * 180.02562 * 2 1 3 5 5 C 1.40047 * 120.08684 * 179.97438 * 4 2 1 6 6 C 1.37792 * 119.91361 * 179.97438 * 5 4 2 7 7 F 1.35092 * 119.95638 * 180.02562 * 6 5 4 8 8 C 1.39324 * 120.08494 * 359.97438 * 6 5 4 9 9 N 1.39527 * 119.91053 * 179.97438 * 8 6 5 10 10 C 1.34781 * 119.99889 * 91.66476 * 9 8 6 11 11 O 1.21280 * 119.99929 * 355.13250 * 10 9 8 12 12 C 1.50695 * 120.00028 * 175.41030 * 10 9 8 13 13 S 1.80993 * 109.47336 * 179.72332 * 12 10 9 14 14 C 1.76195 * 100.00262 * 180.02562 * 13 12 10 15 15 H 1.07999 * 120.00289 * 0.02562 * 14 13 12 16 16 C 1.38804 * 120.00419 * 180.02562 * 14 13 12 17 17 N 1.31633 * 119.99315 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00179 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46931 * 90.00170 * 18 16 14 20 20 H 1.48498 * 109.46938 * 209.99930 * 18 16 14 21 21 H 1.48493 * 109.47266 * 329.99876 * 18 16 14 22 22 C 1.39317 * 120.17299 * 0.27322 * 8 6 5 23 23 F 1.35100 * 119.95764 * 179.70459 * 22 8 6 24 24 C 1.37795 * 120.08793 * 359.44866 * 22 8 6 25 25 H 1.09002 * 109.46719 * 239.99891 * 1 2 3 26 26 H 1.09002 * 109.46741 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47007 * 119.99474 * 1 2 3 28 28 H 1.07996 * 120.03925 * 359.97438 * 5 4 2 29 29 H 0.96995 * 120.00260 * 271.65514 * 9 8 6 30 30 H 1.08998 * 109.47202 * 299.72607 * 12 10 9 31 31 H 1.08999 * 109.47013 * 59.72480 * 12 10 9 32 32 H 0.97004 * 119.99500 * 179.97438 * 17 16 14 33 33 H 1.07997 * 120.04418 * 180.25295 * 24 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0505 0.0000 4 6 2.2413 -1.2717 -0.0006 5 6 3.6417 -1.2739 -0.0011 6 6 4.3271 -2.4693 -0.0011 7 9 5.6780 -2.4724 -0.0011 8 6 3.6286 -3.6748 0.0000 9 7 4.3262 -4.8831 -0.0006 10 6 4.6351 -5.4834 1.1660 11 8 4.3856 -4.9315 2.2167 12 6 5.2963 -6.8376 1.1646 13 16 5.5879 -7.3684 2.8702 14 6 6.3466 -8.9317 2.5787 15 1 6.4976 -9.2785 1.5671 16 6 6.7503 -9.7177 3.6492 17 7 6.5667 -9.2948 4.8821 18 14 7.5540 -11.3753 3.3401 19 1 9.0249 -11.2003 3.2349 20 1 7.2440 -12.2932 4.4655 21 1 7.0320 -11.9502 2.0744 22 6 2.2354 -3.6768 -0.0047 23 9 1.5625 -4.8483 -0.0097 24 6 1.5428 -2.4856 0.0011 25 1 -0.3633 -0.5139 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8900 28 1 4.1838 -0.3398 -0.0015 29 1 4.5887 -5.2912 -0.8404 30 1 4.6481 -7.5579 0.6656 31 1 6.2473 -6.7770 0.6354 32 1 6.8485 -9.8442 5.6303 33 1 0.4629 -2.4880 0.0016 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000272181038.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:48 Heat of formation + Delta-G solvation = -156.242832 kcal Electronic energy + Delta-G solvation = -22692.091629 eV Core-core repulsion = 18672.565342 eV Total energy + Delta-G solvation = -4019.526287 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.25575 -50.19625 -41.47901 -40.77172 -39.01110 -36.12573 -34.60212 -32.72418 -31.84666 -30.92310 -29.42823 -27.69003 -25.25235 -24.11769 -22.33970 -21.38810 -20.06554 -19.34290 -18.74400 -18.56758 -18.17800 -17.05575 -17.03879 -16.97059 -16.89307 -16.53917 -16.38480 -16.21530 -15.98478 -15.87646 -15.67162 -15.08671 -14.57943 -14.06607 -13.78582 -13.77951 -13.41738 -13.19637 -13.17620 -12.96468 -12.91351 -12.90088 -12.63763 -11.77516 -11.36915 -11.16004 -11.03188 -10.83125 -10.33788 -10.24789 -10.06932 -8.70773 -8.36598 -6.15470 -0.96785 -0.28845 0.96507 1.20486 1.29774 1.42370 1.42951 1.55019 1.94280 2.19301 2.24814 2.42184 2.88000 2.98065 3.04660 3.23385 3.53538 3.69949 3.74803 3.92006 4.17062 4.21511 4.28298 4.43286 4.47616 4.51715 4.73479 4.74637 4.82890 5.04222 5.26848 5.40794 5.47807 6.06920 6.18401 6.36456 6.92208 7.04918 8.72705 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.002752 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.829644 B =10170.597455 C =10431.591617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.405 3.595 3 O -0.486 6.486 4 C -0.112 4.112 5 C -0.105 4.105 6 C 0.111 3.889 7 F -0.131 7.131 8 C 0.082 3.918 9 N -0.673 5.673 10 C 0.544 3.456 11 O -0.545 6.545 12 C -0.127 4.127 13 S -0.147 6.147 14 C -0.546 4.546 15 H 0.085 0.915 16 C 0.013 3.987 17 N -0.911 5.911 18 Si 1.000 3.000 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.257 1.257 22 C 0.115 3.885 23 F -0.124 7.124 24 C -0.085 4.085 25 H 0.119 0.881 26 H 0.091 0.909 27 H 0.127 0.873 28 H 0.160 0.840 29 H 0.432 0.568 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.272 0.728 33 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 15.094 -16.858 26.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.285 3.715 3 O -0.363 6.363 4 C -0.113 4.113 5 C -0.124 4.124 6 C 0.090 3.910 7 F -0.110 7.110 8 C -0.012 4.012 9 N -0.328 5.328 10 C 0.332 3.668 11 O -0.420 6.420 12 C -0.278 4.278 13 S 0.080 5.920 14 C -0.694 4.694 15 H 0.103 0.897 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.822 3.178 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.181 1.181 22 C 0.094 3.906 23 F -0.102 7.102 24 C -0.104 4.104 25 H 0.138 0.862 26 H 0.110 0.890 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.273 0.727 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.081 0.919 33 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -13.606 16.441 -14.938 26.049 hybrid contribution 1.503 -2.087 -1.236 2.853 sum -12.103 14.354 -16.175 24.782 Atomic orbital electron populations 1.22365 0.88975 1.06747 1.07244 1.22889 0.93710 0.85457 0.69445 1.90597 1.73287 1.34944 1.37462 1.20451 0.92543 0.95933 1.02384 1.21515 0.94939 0.97181 0.98767 1.17676 0.77403 0.93300 1.02652 1.91536 1.28558 1.97250 1.93626 1.17902 0.90502 0.86150 1.06669 1.42940 1.58776 1.21290 1.09841 1.20393 0.76917 0.86513 0.83019 1.90722 1.53112 1.65730 1.32467 1.23338 1.04700 0.95631 1.04151 1.85618 1.79284 1.23358 1.03698 1.23196 1.45875 1.03996 0.96289 0.89658 1.26146 0.95910 1.03146 0.93977 1.70183 1.45761 1.39549 0.99288 0.84931 0.78355 0.76086 0.78475 1.19371 1.20312 1.18081 1.17680 0.87809 0.82954 1.02160 1.91569 1.79337 1.45810 1.93512 1.21739 1.03499 0.87663 0.97525 0.86246 0.89046 0.85496 0.82242 0.72705 0.86304 0.86504 0.91947 0.78115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.76 8.92 71.24 0.64 -0.13 16 2 C 0.41 5.40 7.22 27.94 0.20 5.60 16 3 O -0.49 -10.38 17.07 -3.09 -0.05 -10.43 16 4 C -0.11 -1.70 5.87 -20.15 -0.12 -1.82 16 5 C -0.10 -2.10 9.56 22.60 0.22 -1.89 16 6 C 0.11 2.75 7.29 22.43 0.16 2.91 16 7 F -0.13 -3.74 17.06 44.97 0.77 -2.97 16 8 C 0.08 2.08 5.29 38.44 0.20 2.29 16 9 N -0.67 -18.20 4.87 -303.14 -1.48 -19.68 16 10 C 0.54 20.33 7.81 87.65 0.68 21.01 16 11 O -0.55 -25.47 15.84 -3.03 -0.05 -25.52 16 12 C -0.13 -4.97 6.16 71.23 0.44 -4.53 16 13 S -0.15 -8.08 20.57 -56.49 -1.16 -9.24 16 14 C -0.55 -30.82 9.50 67.96 0.65 -30.18 16 15 H 0.09 4.44 7.80 -2.91 -0.02 4.42 16 16 C 0.01 0.74 5.49 84.86 0.47 1.20 16 17 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 18 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 21 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 22 C 0.12 2.40 7.29 22.42 0.16 2.56 16 23 F -0.12 -2.88 17.06 44.97 0.77 -2.11 16 24 C -0.09 -1.11 9.43 22.60 0.21 -0.89 16 25 H 0.12 0.07 8.08 -2.39 -0.02 0.05 16 26 H 0.09 0.41 8.12 -2.39 -0.02 0.39 16 27 H 0.13 -0.18 8.08 -2.39 -0.02 -0.19 16 28 H 0.16 3.06 7.64 -2.91 -0.02 3.04 16 29 H 0.43 8.33 8.83 -92.71 -0.82 7.51 16 30 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 31 H 0.12 4.06 8.14 -2.40 -0.02 4.04 16 32 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.20 0.76 7.03 -2.91 -0.02 0.74 16 Total: -1.00 -81.87 326.58 5.39 -76.48 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.37 Total: 7.53 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 3.91 Total: -3.87 kcal Atomic # 7 Polarization: -73.97 SS G_CDS: -1.19 Total: -75.16 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.10 Total: -35.95 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 1.53 Total: -5.08 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.08 SS G_CDS: -1.16 Total: -9.24 kcal Total: -81.87 5.39 -76.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272181038.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.761 kcal (2) G-P(sol) polarization free energy of solvation -81.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds