Wall clock time and date at job start Fri Apr 10 2020 23:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47603 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47070 * 300.00377 * 3 2 1 6 6 H 1.48501 * 109.47277 * 60.00111 * 3 2 1 7 7 C 1.37886 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46898 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.46739 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99663 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00173 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99823 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47208 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47208 * 180.02562 * 15 14 12 17 17 C 1.38264 * 119.97788 * 270.01801 * 16 15 14 18 18 C 1.38212 * 120.03625 * 180.02562 * 17 16 15 19 19 C 1.38344 * 119.99792 * 359.95605 * 18 17 16 20 20 Cl 1.73605 * 120.01708 * 180.29711 * 19 18 17 21 21 C 1.38445 * 119.96254 * 0.02562 * 19 18 17 22 22 Cl 1.73601 * 120.01534 * 180.02562 * 21 19 18 23 23 C 1.38196 * 119.98121 * 90.00245 * 16 15 14 24 24 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47124 * 59.99724 * 9 7 2 26 26 H 1.09002 * 109.46966 * 300.00121 * 9 7 2 27 27 H 1.08997 * 109.47404 * 60.00306 * 10 9 7 28 28 H 1.09002 * 109.47010 * 299.99604 * 10 9 7 29 29 H 0.97001 * 120.00084 * 359.97438 * 11 10 9 30 30 H 1.08998 * 109.47575 * 59.99963 * 14 12 11 31 31 H 1.09002 * 109.46966 * 299.99746 * 14 12 11 32 32 H 1.09008 * 109.47245 * 59.99889 * 15 14 12 33 33 H 1.09002 * 109.47014 * 299.99795 * 15 14 12 34 34 H 1.07999 * 119.98547 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.99868 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.00416 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 2.1866 -6.0980 -0.0018 13 8 3.3994 -6.0981 -0.0023 14 6 1.4330 -7.4031 -0.0018 15 6 2.4272 -8.5661 -0.0033 16 6 1.6737 -9.8712 -0.0039 17 6 1.3285 -10.4702 1.1934 18 6 0.6379 -11.6674 1.1942 19 6 0.2908 -12.2665 -0.0035 20 17 -0.5834 -13.7664 -0.0031 21 6 0.6362 -11.6664 -1.2024 22 17 0.2008 -12.4167 -2.7062 23 6 1.3279 -10.4683 -1.2013 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8906 29 1 0.5427 -4.9308 -0.0011 30 1 0.8060 -7.4607 -0.8915 31 1 0.8068 -7.4611 0.8884 32 1 3.0547 -8.5088 0.8863 33 1 3.0531 -8.5079 -0.8938 34 1 1.5986 -10.0025 2.1286 35 1 0.3682 -12.1346 2.1298 36 1 1.5979 -9.9999 -2.1362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273008217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:54 Heat of formation + Delta-G solvation = -55.131130 kcal Electronic energy + Delta-G solvation = -19868.953920 eV Core-core repulsion = 16403.565140 eV Total energy + Delta-G solvation = -3465.388781 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.12563 -39.20494 -37.04603 -36.89356 -35.00577 -33.99594 -32.87247 -31.35099 -30.40444 -29.19912 -25.58297 -24.09833 -23.39956 -21.66359 -20.94231 -19.98116 -17.73789 -16.91253 -16.56734 -16.35583 -15.84429 -15.39423 -15.18599 -14.54433 -14.41376 -14.36158 -14.04116 -13.84159 -13.21481 -12.74902 -12.63213 -12.32409 -12.25326 -12.20935 -11.98000 -11.46067 -11.36371 -11.23689 -11.22460 -11.15821 -11.06556 -10.65326 -10.37409 -9.85607 -9.52498 -9.37421 -9.23607 -8.95382 -8.58584 -8.39419 -6.12536 -4.15398 0.52166 0.67123 1.45595 1.82569 2.94589 2.98921 3.26162 3.33848 3.38555 3.63863 4.18985 4.34112 4.41539 4.66511 4.71233 4.77841 4.89501 5.01999 5.17731 5.24635 5.28941 5.48749 5.51787 5.59969 5.66840 5.91794 6.08991 6.20228 6.30227 6.30777 6.69842 6.87221 7.48121 7.57784 7.85637 7.96441 8.24250 8.59732 8.90920 9.49675 10.99064 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.001883 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.258278 B =14868.546074 C =14997.183072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.723 5.723 12 C 0.504 3.496 13 O -0.553 6.553 14 C -0.137 4.137 15 C -0.067 4.067 16 C -0.059 4.059 17 C -0.099 4.099 18 C -0.096 4.096 19 C -0.038 4.038 20 Cl -0.054 7.054 21 C -0.028 4.028 22 Cl -0.051 7.051 23 C -0.096 4.096 24 H 0.262 0.738 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.398 0.602 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -27.396 0.274 27.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.026 4.026 10 C -0.001 4.001 11 N -0.372 5.372 12 C 0.289 3.711 13 O -0.431 6.431 14 C -0.177 4.177 15 C -0.104 4.104 16 C -0.060 4.060 17 C -0.118 4.118 18 C -0.115 4.115 19 C -0.066 4.066 20 Cl -0.025 7.025 21 C -0.056 4.056 22 Cl -0.022 7.022 23 C -0.115 4.115 24 H 0.071 0.929 25 H 0.041 0.959 26 H 0.040 0.960 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.232 0.768 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.239 -27.453 0.132 27.481 hybrid contribution -0.339 0.750 -0.148 0.836 sum -1.577 -26.703 -0.016 26.749 Atomic orbital electron populations 1.69964 1.06089 1.26799 1.50427 1.25010 0.94911 0.99466 0.94987 0.86453 0.80159 0.83300 0.77633 1.19578 1.20923 1.20924 1.21092 0.93282 0.90382 1.51258 0.92194 1.19330 0.94209 0.91182 0.97840 1.21725 0.96051 0.81600 1.00770 1.46365 1.10586 1.06660 1.73614 1.20524 0.88252 0.85607 0.76680 1.90681 1.14050 1.87888 1.50524 1.21665 0.99114 0.92227 1.04731 1.20391 0.96440 0.88234 1.05369 1.20060 0.97023 0.96710 0.92185 1.21215 0.97380 0.94519 0.98654 1.21061 0.98319 0.95658 0.96461 1.20788 1.01277 0.90910 0.93621 1.98391 1.74339 1.30882 1.98883 1.20785 1.02323 0.95855 0.86612 1.98398 1.91588 1.81521 1.30690 1.21018 0.97760 0.93175 0.99553 0.92877 0.95938 0.95956 0.92569 0.92577 0.76838 0.88836 0.88798 0.89396 0.89529 0.84136 0.83975 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.61 5.46 -17.81 -0.10 1.51 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.28 9.11 -34.44 -0.31 -14.59 16 8 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.14 16 10 C 0.12 2.49 5.61 -4.04 -0.02 2.47 16 11 N -0.72 -11.76 5.56 -60.29 -0.33 -12.10 16 12 C 0.50 7.62 7.83 -10.99 -0.09 7.54 16 13 O -0.55 -10.47 15.98 5.56 0.09 -10.38 16 14 C -0.14 -1.35 5.68 -27.88 -0.16 -1.51 16 15 C -0.07 -0.61 4.63 -27.88 -0.13 -0.74 16 16 C -0.06 -0.48 5.13 -104.63 -0.54 -1.02 16 17 C -0.10 -0.71 9.70 -39.58 -0.38 -1.09 16 18 C -0.10 -0.69 9.83 -39.55 -0.39 -1.08 16 19 C -0.04 -0.33 6.32 -39.47 -0.25 -0.58 16 20 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 21 C -0.03 -0.25 6.32 -39.47 -0.25 -0.50 16 22 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 23 C -0.10 -0.80 9.48 -39.56 -0.38 -1.18 16 24 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 25 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.40 5.53 8.47 -40.82 -0.35 5.19 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 0.85 8.04 -51.92 -0.42 0.43 16 33 H 0.09 0.86 8.04 -51.93 -0.42 0.44 16 34 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 35 H 0.14 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -31.21 345.45 -9.89 -41.09 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.53 Total: -0.41 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -3.13 Total: -10.64 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.40 Total: -37.20 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -2.90 Total: -3.81 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.21 -9.89 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273008217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.036 kcal (2) G-P(sol) polarization free energy of solvation -31.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds