Wall clock time and date at job start Fri Apr 10 2020 23:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00304 * 2 1 4 4 H 1.48496 * 109.47603 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47070 * 300.00377 * 3 2 1 6 6 H 1.48501 * 109.47277 * 60.00111 * 3 2 1 7 7 C 1.37886 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99881 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46898 * 180.02562 * 9 7 2 11 11 N 1.46505 * 109.46739 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99663 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00173 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.99823 * 179.97438 * 12 11 10 15 15 C 1.53001 * 109.47208 * 179.97438 * 14 12 11 16 16 C 1.50701 * 109.47208 * 180.02562 * 15 14 12 17 17 C 1.38264 * 119.97788 * 270.01801 * 16 15 14 18 18 C 1.38212 * 120.03625 * 180.02562 * 17 16 15 19 19 C 1.38344 * 119.99792 * 359.95605 * 18 17 16 20 20 Cl 1.73605 * 120.01708 * 180.29711 * 19 18 17 21 21 C 1.38445 * 119.96254 * 0.02562 * 19 18 17 22 22 Cl 1.73601 * 120.01534 * 180.02562 * 21 19 18 23 23 C 1.38196 * 119.98121 * 90.00245 * 16 15 14 24 24 H 0.96999 * 119.99927 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47124 * 59.99724 * 9 7 2 26 26 H 1.09002 * 109.46966 * 300.00121 * 9 7 2 27 27 H 1.08997 * 109.47404 * 60.00306 * 10 9 7 28 28 H 1.09002 * 109.47010 * 299.99604 * 10 9 7 29 29 H 0.97001 * 120.00084 * 359.97438 * 11 10 9 30 30 H 1.08998 * 109.47575 * 59.99963 * 14 12 11 31 31 H 1.09002 * 109.46966 * 299.99746 * 14 12 11 32 32 H 1.09008 * 109.47245 * 59.99889 * 15 14 12 33 33 H 1.09002 * 109.47014 * 299.99795 * 15 14 12 34 34 H 1.07999 * 119.98547 * 0.02562 * 17 16 15 35 35 H 1.08000 * 119.99868 * 180.02562 * 18 17 16 36 36 H 1.08002 * 120.00416 * 0.02562 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9309 -0.0012 12 6 2.1866 -6.0980 -0.0018 13 8 3.3994 -6.0981 -0.0023 14 6 1.4330 -7.4031 -0.0018 15 6 2.4272 -8.5661 -0.0033 16 6 1.6737 -9.8712 -0.0039 17 6 1.3285 -10.4702 1.1934 18 6 0.6379 -11.6674 1.1942 19 6 0.2908 -12.2665 -0.0035 20 17 -0.5834 -13.7664 -0.0031 21 6 0.6362 -11.6664 -1.2024 22 17 0.2008 -12.4167 -2.7062 23 6 1.3279 -10.4683 -1.2013 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8719 -3.6045 0.8894 28 1 2.8719 -3.6044 -0.8906 29 1 0.5427 -4.9308 -0.0011 30 1 0.8060 -7.4607 -0.8915 31 1 0.8068 -7.4611 0.8884 32 1 3.0547 -8.5088 0.8863 33 1 3.0531 -8.5079 -0.8938 34 1 1.5986 -10.0025 2.1286 35 1 0.3682 -12.1346 2.1298 36 1 1.5979 -9.9999 -2.1362 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273008217.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:53 Heat of formation + Delta-G solvation = -72.443297 kcal Electronic energy + Delta-G solvation = -19869.704632 eV Core-core repulsion = 16403.565140 eV Total energy + Delta-G solvation = -3466.139493 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 315.053 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -40.92782 -40.29984 -37.70198 -37.53785 -36.60550 -34.81798 -34.78379 -31.96339 -31.79442 -30.37639 -27.06524 -25.38565 -23.98314 -22.93475 -22.21850 -21.18819 -18.64407 -18.33098 -17.83902 -17.26126 -16.67219 -16.54556 -16.51866 -16.38192 -15.30693 -15.15626 -14.93606 -14.80505 -14.42917 -14.20529 -13.94761 -13.38630 -13.20351 -12.96590 -12.90861 -12.85072 -12.70122 -12.51288 -12.22800 -12.11075 -11.99915 -11.91768 -11.83965 -11.65258 -11.43595 -10.79513 -10.60812 -9.97287 -9.95824 -9.61670 -8.24371 -6.34489 -0.09849 0.08895 0.82042 1.20401 1.40820 1.42185 1.54962 1.73284 2.26399 2.40746 2.54265 3.10456 3.58128 3.64929 3.95709 4.03467 4.12170 4.23541 4.28809 4.37417 4.51693 4.54891 4.69661 4.74765 4.87715 4.88877 4.98264 5.07584 5.19662 5.33805 5.46091 5.52399 5.59689 5.62334 5.80110 6.17127 6.69315 6.79462 7.34925 7.35354 8.87517 Molecular weight = 315.05amu Principal moments of inertia in cm(-1) A = 0.030923 B = 0.001883 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.258278 B =14868.546074 C =14997.183072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.721 5.721 12 C 0.503 3.497 13 O -0.592 6.592 14 C -0.125 4.125 15 C -0.060 4.060 16 C -0.060 4.060 17 C -0.094 4.094 18 C -0.094 4.094 19 C -0.048 4.048 20 Cl -0.057 7.057 21 C -0.041 4.041 22 Cl -0.058 7.058 23 C -0.100 4.100 24 H 0.266 0.734 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.411 0.589 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.908 -27.878 0.945 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.016 4.016 10 C 0.016 3.984 11 N -0.372 5.372 12 C 0.292 3.708 13 O -0.473 6.473 14 C -0.164 4.164 15 C -0.098 4.098 16 C -0.061 4.061 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.076 4.076 20 Cl -0.028 7.028 21 C -0.069 4.069 22 Cl -0.029 7.029 23 C -0.119 4.119 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.247 0.753 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.179 0.821 35 H 0.180 0.820 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.322 -27.961 0.801 28.004 hybrid contribution -0.322 0.852 -0.344 0.974 sum -1.645 -27.109 0.458 27.163 Atomic orbital electron populations 1.70061 1.07493 1.27917 1.51118 1.25876 0.95813 1.03103 0.94502 0.85404 0.78977 0.78836 0.77878 1.18980 1.20294 1.20222 1.21516 0.93573 0.92028 1.51314 0.92377 1.19140 0.94263 0.91831 0.96345 1.21182 0.94990 0.82606 0.99652 1.46212 1.11181 1.05711 1.74055 1.21422 0.87974 0.86585 0.74846 1.90666 1.16111 1.88490 1.52068 1.21674 0.98962 0.88842 1.06938 1.20282 0.96203 0.88535 1.04786 1.19931 0.97290 0.96296 0.92544 1.21463 0.96409 0.94241 0.99105 1.21316 0.97685 0.95546 0.96752 1.20988 1.01516 0.90984 0.94088 1.98390 1.74433 1.31109 1.98898 1.20892 1.03121 0.96314 0.86569 1.98392 1.91698 1.81666 1.31160 1.21112 0.97631 0.93075 1.00071 0.92558 0.97354 0.97261 0.93639 0.93792 0.75295 0.86803 0.86165 0.89726 0.90574 0.82053 0.81973 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.71 13.29 21.45 0.28 -53.43 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.55 -30.13 9.11 25.60 0.23 -29.90 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.02 1.07 5.09 29.85 0.15 1.22 16 10 C 0.14 5.80 5.61 86.38 0.48 6.28 16 11 N -0.72 -22.87 5.56 -463.06 -2.57 -25.44 16 12 C 0.50 14.59 7.83 87.66 0.69 15.28 16 13 O -0.59 -22.18 15.98 -3.02 -0.05 -22.23 16 14 C -0.12 -2.14 5.68 29.85 0.17 -1.97 16 15 C -0.06 -0.99 4.63 29.85 0.14 -0.85 16 16 C -0.06 -0.83 5.13 -19.87 -0.10 -0.94 16 17 C -0.09 -1.07 9.70 22.27 0.22 -0.85 16 18 C -0.09 -1.12 9.83 22.29 0.22 -0.90 16 19 C -0.05 -0.75 6.32 22.34 0.14 -0.61 16 20 Cl -0.06 -0.90 27.96 -2.72 -0.08 -0.98 16 21 C -0.04 -0.69 6.32 22.34 0.14 -0.55 16 22 Cl -0.06 -1.01 27.96 -2.72 -0.08 -1.08 16 23 C -0.10 -1.51 9.48 22.29 0.21 -1.30 16 24 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.41 10.91 8.47 -92.71 -0.79 10.12 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.47 8.04 -2.38 -0.02 1.45 16 33 H 0.08 1.42 8.04 -2.39 -0.02 1.41 16 34 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 35 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -66.99 345.45 3.01 -63.98 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: 0.32 Total: 8.26 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 3.15 Total: -14.31 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -2.29 Total: -78.87 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.15 Total: -2.06 kcal Total: -66.99 3.01 -63.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273008217.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.465 kcal (2) G-P(sol) polarization free energy of solvation -66.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds