Wall clock time and date at job start Fri Apr 10 2020 23:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46492 * 120.00330 * 276.85565 * 3 2 1 5 5 C 1.50702 * 109.47636 * 270.00303 * 4 3 2 6 6 H 1.08007 * 119.99527 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00258 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00259 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47009 * 90.00292 * 9 7 5 11 11 H 1.48503 * 109.47436 * 210.00220 * 9 7 5 12 12 H 1.48495 * 109.47472 * 330.00436 * 9 7 5 13 13 C 1.34775 * 119.99347 * 96.86539 * 3 2 1 14 14 O 1.21616 * 119.99645 * 186.71334 * 13 3 2 15 15 C 1.47329 * 120.00551 * 6.70274 * 13 3 2 16 16 C 1.41326 * 126.43055 * 332.49767 * 15 13 3 17 17 N 1.30423 * 108.04125 * 179.84786 * 16 15 13 18 18 N 1.39927 * 108.94787 * 0.41143 * 17 16 15 19 19 C 1.46500 * 125.75339 * 179.73452 * 18 17 16 20 20 C 1.34334 * 108.49477 * 359.73557 * 18 17 16 21 21 Br 1.89099 * 126.31132 * 180.02562 * 20 18 17 22 22 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46610 * 299.99946 * 1 2 3 24 24 H 1.08997 * 109.47095 * 59.99760 * 1 2 3 25 25 H 1.09005 * 109.47013 * 239.99938 * 2 1 3 26 26 H 1.08996 * 109.46910 * 120.00755 * 2 1 3 27 27 H 1.09008 * 109.47042 * 30.00494 * 4 3 2 28 28 H 1.08995 * 109.47335 * 150.00205 * 4 3 2 29 29 H 0.96993 * 120.00390 * 179.97438 * 8 7 5 30 30 H 1.08001 * 125.97447 * 0.02562 * 16 15 13 31 31 H 1.09006 * 109.46919 * 269.99847 * 19 18 17 32 32 H 1.08996 * 109.46941 * 29.99732 * 19 18 17 33 33 H 1.08998 * 109.47378 * 149.99770 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1198 2.1223 -1.2595 5 6 3.4845 1.9063 -1.8612 6 1 4.2042 1.2792 -1.3560 7 6 3.8139 2.5083 -3.0570 8 7 2.9373 3.2715 -3.6725 9 14 5.5057 2.2410 -3.8024 10 1 5.4717 1.0543 -4.6945 11 1 5.8957 3.4396 -4.5876 12 1 6.4947 2.0166 -2.7177 13 6 2.3745 1.9699 1.1589 14 8 2.6629 3.1512 1.1773 15 6 2.4142 1.1826 2.4035 16 6 1.6423 0.0354 2.6958 17 7 1.9654 -0.3752 3.8908 18 7 2.9382 0.4815 4.4180 19 6 3.5570 0.3632 5.7406 20 6 3.2090 1.4307 3.5068 21 35 4.4495 2.8451 3.6980 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.3568 1.7673 -1.9525 28 1 1.9710 3.1851 -1.0688 29 1 3.1692 3.6953 -4.5135 30 1 0.9145 -0.4230 2.0426 31 1 2.9720 0.9272 6.4672 32 1 3.5879 -0.6859 6.0347 33 1 4.5714 0.7603 5.7040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273256350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:58 Heat of formation + Delta-G solvation = 66.094167 kcal Electronic energy + Delta-G solvation = -18789.276353 eV Core-core repulsion = 15706.300196 eV Total energy + Delta-G solvation = -3082.976157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.44452 -38.56726 -35.37138 -33.70562 -32.67151 -31.93320 -30.17175 -29.37557 -27.70284 -26.52769 -23.30666 -23.03235 -21.54781 -20.78502 -18.74937 -16.99712 -16.36194 -16.07928 -15.76490 -15.38398 -14.67252 -14.20715 -14.11412 -13.45962 -13.19101 -13.01510 -12.80003 -12.35087 -12.16469 -11.97884 -11.66451 -11.30062 -11.24797 -11.11981 -10.86149 -10.64109 -10.48472 -10.29822 -10.06598 -9.58854 -9.37087 -8.90453 -8.54774 -8.38416 -7.56515 -5.99460 -4.03776 1.06991 1.34493 2.26853 2.37711 3.33136 3.39745 3.44195 3.76702 4.07843 4.36281 4.50392 4.86542 4.88446 5.12398 5.15520 5.24992 5.34427 5.39402 5.47855 5.65255 5.83080 6.04551 6.27832 6.30821 6.45989 6.56395 7.15357 7.36182 7.52792 7.62166 7.97941 8.29356 8.49139 8.95669 9.16694 9.61209 11.08476 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.005590 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.425127 B = 5007.628270 C = 6126.131145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.086 3.914 3 N -0.588 5.588 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.577 3.423 14 O -0.528 6.528 15 C -0.232 4.232 16 C 0.066 3.934 17 N -0.282 5.282 18 N -0.350 5.350 19 C 0.092 3.908 20 C 0.116 3.884 21 Br 0.048 6.952 22 H 0.062 0.938 23 H 0.054 0.946 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.263 0.737 30 H 0.211 0.789 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.424 -7.100 18.051 19.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.038 4.038 3 N -0.319 5.319 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.362 3.638 14 O -0.405 6.405 15 C -0.249 4.249 16 C -0.119 4.119 17 N -0.103 5.103 18 N -0.133 5.133 19 C -0.049 4.049 20 C -0.094 4.094 21 Br 0.130 6.870 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.227 0.773 31 H 0.101 0.899 32 H 0.116 0.884 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.016 -6.718 18.988 20.142 hybrid contribution 0.828 0.044 -1.134 1.404 sum 0.844 -6.674 17.855 19.080 Atomic orbital electron populations 1.22296 0.96685 1.01625 1.02885 1.21918 0.93633 0.84852 1.03426 1.47993 1.62706 1.13181 1.08038 1.19282 0.96845 0.92981 0.78007 1.21458 0.99309 1.29899 1.05715 0.92458 1.24907 0.97246 0.94960 0.96881 1.69930 1.34639 1.31638 1.17171 0.86535 0.84441 0.77578 0.79107 1.20684 1.21125 1.19906 1.17027 0.78451 0.86367 0.81921 1.90780 1.49094 1.14870 1.85729 1.20524 1.04757 1.02072 0.97543 1.24751 0.99628 0.94268 0.93297 1.77202 1.06119 1.15148 1.11879 1.48414 1.31308 1.19872 1.13692 1.22054 0.98349 1.05173 0.79337 1.23205 1.00267 0.93476 0.92420 1.96860 1.52630 1.40066 1.97403 0.91886 0.92701 0.91395 0.90090 0.90252 0.94889 0.93522 0.92779 0.77301 0.89886 0.88372 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.37 9.16 37.16 0.34 -2.03 16 2 C 0.09 1.41 5.64 -4.04 -0.02 1.39 16 3 N -0.59 -12.71 2.46 -176.37 -0.43 -13.15 16 4 C 0.25 6.49 5.23 -5.20 -0.03 6.46 16 5 C -0.52 -14.92 9.39 -34.44 -0.32 -15.24 16 6 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 9 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 13 C 0.58 12.68 7.56 -12.56 -0.10 12.59 16 14 O -0.53 -13.42 15.42 5.26 0.08 -13.34 16 15 C -0.23 -4.17 5.73 -105.03 -0.60 -4.77 16 16 C 0.07 0.98 9.53 -16.98 -0.16 0.82 16 17 N -0.28 -4.05 12.49 30.87 0.39 -3.67 16 18 N -0.35 -4.73 3.98 -65.77 -0.26 -4.99 16 19 C 0.09 0.76 11.25 59.85 0.67 1.43 16 20 C 0.12 1.88 7.40 -16.46 -0.12 1.76 16 21 Br 0.05 0.73 32.10 -68.01 -2.18 -1.45 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 24 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 25 H 0.08 1.37 8.12 -51.93 -0.42 0.94 16 26 H 0.08 1.15 4.03 -51.93 -0.21 0.94 16 27 H 0.03 0.87 7.99 -51.92 -0.42 0.45 16 28 H 0.05 1.38 7.34 -51.93 -0.38 1.00 16 29 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 30 H 0.21 2.58 4.13 -52.49 -0.22 2.36 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.64 7.62 -51.93 -0.40 0.25 16 LS Contribution 302.14 15.07 4.55 4.55 Total: -1.00 -34.10 302.14 -6.23 -40.33 By element: Atomic # 1 Polarization: 0.22 SS G_CDS: -3.65 Total: -3.44 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -0.44 Total: 4.08 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: 0.43 Total: -47.68 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 35 Polarization: 0.73 SS G_CDS: -2.18 Total: -1.45 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -34.10 -6.23 -40.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273256350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.426 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds