Wall clock time and date at job start Fri Apr 10 2020 23:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47044 * 2 1 4 4 C 1.46492 * 120.00330 * 276.85565 * 3 2 1 5 5 C 1.50702 * 109.47636 * 270.00303 * 4 3 2 6 6 H 1.08007 * 119.99527 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00258 * 179.97438 * 5 4 3 8 8 N 1.31516 * 120.00259 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00058 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47009 * 90.00292 * 9 7 5 11 11 H 1.48503 * 109.47436 * 210.00220 * 9 7 5 12 12 H 1.48495 * 109.47472 * 330.00436 * 9 7 5 13 13 C 1.34775 * 119.99347 * 96.86539 * 3 2 1 14 14 O 1.21616 * 119.99645 * 186.71334 * 13 3 2 15 15 C 1.47329 * 120.00551 * 6.70274 * 13 3 2 16 16 C 1.41326 * 126.43055 * 332.49767 * 15 13 3 17 17 N 1.30423 * 108.04125 * 179.84786 * 16 15 13 18 18 N 1.39927 * 108.94787 * 0.41143 * 17 16 15 19 19 C 1.46500 * 125.75339 * 179.73452 * 18 17 16 20 20 C 1.34334 * 108.49477 * 359.73557 * 18 17 16 21 21 Br 1.89099 * 126.31132 * 180.02562 * 20 18 17 22 22 H 1.09004 * 109.47214 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46610 * 299.99946 * 1 2 3 24 24 H 1.08997 * 109.47095 * 59.99760 * 1 2 3 25 25 H 1.09005 * 109.47013 * 239.99938 * 2 1 3 26 26 H 1.08996 * 109.46910 * 120.00755 * 2 1 3 27 27 H 1.09008 * 109.47042 * 30.00494 * 4 3 2 28 28 H 1.08995 * 109.47335 * 150.00205 * 4 3 2 29 29 H 0.96993 * 120.00390 * 179.97438 * 8 7 5 30 30 H 1.08001 * 125.97447 * 0.02562 * 16 15 13 31 31 H 1.09006 * 109.46919 * 269.99847 * 19 18 17 32 32 H 1.08996 * 109.46941 * 29.99732 * 19 18 17 33 33 H 1.08998 * 109.47378 * 149.99770 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1198 2.1223 -1.2595 5 6 3.4845 1.9063 -1.8612 6 1 4.2042 1.2792 -1.3560 7 6 3.8139 2.5083 -3.0570 8 7 2.9373 3.2715 -3.6725 9 14 5.5057 2.2410 -3.8024 10 1 5.4717 1.0543 -4.6945 11 1 5.8957 3.4396 -4.5876 12 1 6.4947 2.0166 -2.7177 13 6 2.3745 1.9699 1.1589 14 8 2.6629 3.1512 1.1773 15 6 2.4142 1.1826 2.4035 16 6 1.6423 0.0354 2.6958 17 7 1.9654 -0.3752 3.8908 18 7 2.9382 0.4815 4.4180 19 6 3.5570 0.3632 5.7406 20 6 3.2090 1.4307 3.5068 21 35 4.4495 2.8451 3.6980 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.3568 1.7673 -1.9525 28 1 1.9710 3.1851 -1.0688 29 1 3.1692 3.6953 -4.5135 30 1 0.9145 -0.4230 2.0426 31 1 2.9720 0.9272 6.4672 32 1 3.5879 -0.6859 6.0347 33 1 4.5714 0.7603 5.7040 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273256350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:04:57 Heat of formation + Delta-G solvation = 42.947490 kcal Electronic energy + Delta-G solvation = -18790.280068 eV Core-core repulsion = 15706.300196 eV Total energy + Delta-G solvation = -3083.979872 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.65084 -40.20696 -37.02272 -35.13997 -34.42564 -33.16179 -31.69695 -30.70705 -29.16916 -27.94175 -25.16962 -24.40370 -22.85535 -22.06239 -20.21603 -18.61595 -18.27268 -17.37050 -17.10439 -16.86222 -16.24380 -15.86278 -15.66278 -14.78411 -14.51074 -14.25747 -13.92777 -13.69496 -13.50701 -13.43764 -13.21001 -13.05869 -12.65928 -12.53614 -12.47851 -12.38633 -12.14125 -11.81114 -11.67537 -11.49123 -10.65132 -10.59800 -10.44158 -9.84589 -9.34372 -8.17917 -6.32256 -0.14281 0.09595 1.01319 1.37898 1.38725 1.41215 1.51563 2.16322 2.43132 2.52121 3.11427 3.31883 3.79521 3.83097 4.14130 4.20344 4.29371 4.33859 4.41627 4.57431 4.65003 4.96175 5.00501 5.08404 5.14406 5.30147 5.43017 5.45070 5.62750 5.90805 6.11897 6.20593 6.74653 6.82348 7.31778 7.50676 8.88887 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.005590 C = 0.004569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.425127 B = 5007.628270 C = 6126.131145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.080 3.920 3 N -0.594 5.594 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.964 3.036 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.274 1.274 13 C 0.571 3.429 14 O -0.577 6.577 15 C -0.265 4.265 16 C 0.076 3.924 17 N -0.278 5.278 18 N -0.336 5.336 19 C 0.076 3.924 20 C 0.113 3.887 21 Br 0.051 6.949 22 H 0.105 0.895 23 H 0.060 0.940 24 H 0.046 0.954 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.026 0.974 28 H 0.002 0.998 29 H 0.267 0.733 30 H 0.233 0.767 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.059 -9.268 19.482 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.042 4.042 3 N -0.324 5.324 4 C 0.144 3.856 5 C -0.580 4.580 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.788 3.212 10 H -0.189 1.189 11 H -0.206 1.206 12 H -0.199 1.199 13 C 0.359 3.641 14 O -0.457 6.457 15 C -0.283 4.283 16 C -0.109 4.109 17 N -0.100 5.100 18 N -0.117 5.117 19 C -0.062 4.062 20 C -0.099 4.099 21 Br 0.133 6.867 22 H 0.123 0.877 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.092 0.908 26 H 0.122 0.878 27 H 0.044 0.956 28 H 0.020 0.980 29 H 0.076 0.924 30 H 0.248 0.752 31 H 0.123 0.877 32 H 0.140 0.860 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.480 -8.952 20.459 22.337 hybrid contribution 0.675 0.712 -1.456 1.756 sum 1.154 -8.239 19.003 20.745 Atomic orbital electron populations 1.22243 0.94126 1.04131 1.02189 1.22246 0.95695 0.81977 1.04293 1.47981 1.62948 1.14920 1.06579 1.18727 0.95884 0.91111 0.79896 1.21698 1.00063 1.30042 1.06158 0.93067 1.25787 1.01258 0.94467 0.97292 1.70047 1.36668 1.32329 1.17631 0.85475 0.79300 0.78121 0.78287 1.18857 1.20617 1.19875 1.17571 0.77262 0.86171 0.83067 1.90734 1.51261 1.17060 1.86689 1.20203 1.07704 1.03746 0.96633 1.24951 0.99365 0.92995 0.93632 1.77200 1.06215 1.15113 1.11503 1.48842 1.30147 1.18290 1.14442 1.22580 0.99133 1.07324 0.77179 1.23287 0.99992 0.93937 0.92664 1.96855 1.52275 1.40219 1.97306 0.87685 0.92078 0.93449 0.90760 0.87799 0.95599 0.97976 0.92449 0.75167 0.87730 0.86048 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.25 9.16 71.98 0.66 -3.59 16 2 C 0.08 2.56 5.64 86.38 0.49 3.05 16 3 N -0.59 -26.32 2.46 -830.15 -2.04 -28.36 16 4 C 0.26 14.51 5.23 85.64 0.45 14.96 16 5 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 6 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 7 C 0.01 0.64 5.46 84.65 0.46 1.10 16 8 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 9 Si 0.96 45.30 29.54 68.60 2.03 47.33 16 10 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 13 C 0.57 25.73 7.56 86.64 0.66 26.38 16 14 O -0.58 -30.66 15.42 -4.08 -0.06 -30.73 16 15 C -0.27 -9.37 5.73 -20.13 -0.12 -9.48 16 16 C 0.08 2.08 9.53 85.66 0.82 2.89 16 17 N -0.28 -7.19 12.49 -56.26 -0.70 -7.89 16 18 N -0.34 -8.18 3.98 -362.00 -1.44 -9.62 16 19 C 0.08 1.01 11.25 127.77 1.44 2.45 16 20 C 0.11 3.53 7.40 84.31 0.62 4.15 16 21 Br 0.05 1.53 32.10 -20.37 -0.65 0.87 16 22 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.06 1.47 7.35 -2.39 -0.02 1.45 16 24 H 0.05 1.39 8.06 -2.39 -0.02 1.37 16 25 H 0.07 2.46 8.12 -2.38 -0.02 2.45 16 26 H 0.10 2.81 4.03 -2.39 -0.01 2.80 16 27 H 0.03 1.43 7.99 -2.38 -0.02 1.41 16 28 H 0.00 0.13 7.34 -2.39 -0.02 0.12 16 29 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 30 H 0.23 5.00 4.13 -2.91 -0.01 4.98 16 31 H 0.10 1.01 8.14 -2.38 -0.02 1.00 16 32 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 1.15 7.62 -2.39 -0.02 1.13 16 Total: -1.00 -76.39 302.14 4.26 -72.13 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.14 Total: 1.77 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 5.71 Total: 10.57 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.90 Total: -101.95 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.06 Total: -30.73 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Atomic # 35 Polarization: 1.53 SS G_CDS: -0.65 Total: 0.87 kcal Total: -76.39 4.26 -72.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273256350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.082 kcal (2) G-P(sol) polarization free energy of solvation -76.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds