Wall clock time and date at job start Fri Apr 10 2020 23:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47387 * 2 1 4 4 C 1.46489 * 120.00047 * 261.46766 * 3 2 1 5 5 C 1.50708 * 109.47133 * 270.00101 * 4 3 2 6 6 H 1.08001 * 119.99704 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00342 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47056 * 60.00301 * 9 7 5 11 11 H 1.48502 * 109.47463 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47268 * 300.00158 * 9 7 5 13 13 C 1.34771 * 119.99560 * 81.46759 * 3 2 1 14 14 O 1.21632 * 120.00138 * 179.46163 * 13 3 2 15 15 C 1.47171 * 120.00570 * 359.46042 * 13 3 2 16 16 C 1.38403 * 126.87395 * 350.94812 * 15 13 3 17 17 C 1.39748 * 105.35027 * 180.02562 * 16 15 13 18 18 Br 1.89101 * 126.07834 * 180.02562 * 17 16 15 19 19 N 1.30918 * 107.84158 * 359.97438 * 17 16 15 20 20 N 1.28446 * 110.91767 * 0.02562 * 19 17 16 21 21 C 1.46497 * 125.17414 * 179.97438 * 20 19 17 22 22 H 1.09003 * 109.46909 * 306.58756 * 1 2 3 23 23 H 1.09000 * 109.47133 * 66.58704 * 1 2 3 24 24 H 1.09000 * 109.47810 * 186.58450 * 1 2 3 25 25 H 1.08996 * 109.46698 * 239.99919 * 2 1 3 26 26 H 1.09001 * 109.46936 * 120.00345 * 2 1 3 27 27 H 1.09002 * 109.47401 * 29.99906 * 4 3 2 28 28 H 1.08996 * 109.47547 * 150.00113 * 4 3 2 29 29 H 0.96996 * 120.00103 * 179.97438 * 8 7 5 30 30 H 1.08002 * 127.32257 * 359.97438 * 16 15 13 31 31 H 1.09007 * 109.46812 * 85.80147 * 21 20 19 32 32 H 1.08995 * 109.46999 * 205.80107 * 21 20 19 33 33 H 1.08998 * 109.47518 * 325.80383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4400 2.0090 -1.2546 5 6 3.9094 1.7558 -1.4740 6 1 4.4728 1.1847 -0.7509 7 6 4.5346 2.2541 -2.5973 8 7 3.8488 2.9509 -3.4771 9 14 6.3560 1.9409 -2.8689 10 1 6.6013 0.4781 -2.9410 11 1 6.7837 2.5783 -4.1402 12 1 7.1311 2.5179 -1.7412 13 6 2.0798 2.0742 1.1543 14 8 2.4944 3.2176 1.1559 15 6 1.6450 1.4475 2.4129 16 6 0.9938 0.2345 2.5551 17 6 0.7972 0.0791 3.9300 18 35 -0.0455 -1.3873 4.7757 19 7 1.3011 1.1289 4.5284 20 7 1.8031 1.9466 3.6745 21 6 2.4471 3.2206 4.0037 22 1 -0.3633 0.6126 0.8252 23 1 -0.3633 0.4083 -0.9430 24 1 -0.3635 -1.0208 0.1178 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8709 1.5855 -2.0821 28 1 2.2603 3.0828 -1.2020 29 1 4.2888 3.3017 -4.2671 30 1 0.6995 -0.4467 1.7704 31 1 3.4984 3.0475 4.2338 32 1 2.3679 3.8980 3.1535 33 1 1.9541 3.6641 4.8687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277038515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:02 Heat of formation + Delta-G solvation = 70.952514 kcal Electronic energy + Delta-G solvation = -18887.022744 eV Core-core repulsion = 15804.257261 eV Total energy + Delta-G solvation = -3082.765483 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.62428 -38.98301 -35.94422 -33.55284 -33.04566 -31.26897 -30.87824 -30.06172 -27.33985 -26.50847 -23.82091 -23.13071 -22.11852 -20.77496 -18.99724 -16.96078 -16.61635 -16.33786 -16.21432 -15.29314 -14.65862 -14.37693 -14.31851 -13.74759 -13.36573 -13.04197 -12.65803 -12.40616 -12.09845 -11.99905 -11.79100 -11.34109 -11.16798 -11.09749 -11.01843 -10.84568 -10.58924 -10.26800 -10.19388 -9.77103 -9.33357 -9.03241 -8.83431 -8.50293 -7.86272 -6.11877 -4.17286 1.23169 1.42124 2.28502 2.61253 3.28062 3.32649 3.35087 3.62385 3.75603 4.38398 4.55307 4.72665 5.17388 5.21907 5.23057 5.27377 5.35641 5.43909 5.51863 5.64406 5.72933 5.97186 6.09420 6.22547 6.43991 6.60927 6.89879 7.28779 7.36890 7.81340 7.85518 8.11951 8.17702 8.69191 8.88982 9.48029 10.96182 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.003927 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.907940 B = 7128.435204 C = 7581.190158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.085 3.915 3 N -0.571 5.571 4 C 0.248 3.752 5 C -0.531 4.531 6 H 0.058 0.942 7 C 0.064 3.936 8 N -0.893 5.893 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.576 3.424 14 O -0.538 6.538 15 C -0.009 4.009 16 C -0.189 4.189 17 C 0.012 3.988 18 Br 0.022 6.978 19 N -0.257 5.257 20 N -0.248 5.248 21 C 0.079 3.921 22 H 0.063 0.937 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.047 0.953 29 H 0.265 0.735 30 H 0.197 0.803 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 -8.350 14.446 18.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.038 4.038 3 N -0.301 5.301 4 C 0.129 3.871 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 C 0.361 3.639 14 O -0.417 6.417 15 C -0.138 4.138 16 C -0.219 4.219 17 C -0.222 4.222 18 Br 0.104 6.896 19 N -0.093 5.093 20 N -0.037 5.037 21 C -0.061 4.061 22 H 0.082 0.918 23 H 0.084 0.916 24 H 0.087 0.913 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.213 0.787 31 H 0.104 0.896 32 H 0.142 0.858 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.711 -7.536 15.597 19.389 hybrid contribution 1.116 -0.211 -1.046 1.544 sum -7.595 -7.747 14.551 18.150 Atomic orbital electron populations 1.22505 0.96412 1.02152 1.03223 1.22041 0.93673 0.84144 1.03992 1.48024 1.60867 1.12854 1.08398 1.19418 0.95144 0.94758 0.77778 1.21363 0.94229 1.34742 1.06590 0.92385 1.24912 0.98476 0.94780 0.95710 1.69915 1.36425 1.35395 1.11462 0.86545 0.84872 0.78445 0.77493 1.20160 1.21114 1.20193 1.16778 0.79497 0.85668 0.81943 1.90737 1.47634 1.17561 1.85771 1.21909 1.07060 0.96570 0.88264 1.23342 1.04710 0.98014 0.95790 1.23370 1.08959 0.96639 0.93237 1.96665 1.77427 1.34789 1.80732 1.73157 1.13373 1.01410 1.21310 1.45648 1.39160 1.16341 1.02502 1.22546 0.97928 0.80380 1.05226 0.91771 0.91609 0.91302 0.89096 0.90123 0.94348 0.93523 0.92540 0.78694 0.89552 0.85846 0.88960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.42 37.16 0.31 -2.03 16 2 C 0.09 1.32 5.65 -4.04 -0.02 1.30 16 3 N -0.57 -11.66 2.48 -176.43 -0.44 -12.10 16 4 C 0.25 6.16 5.12 -5.20 -0.03 6.13 16 5 C -0.53 -14.47 9.39 -34.44 -0.32 -14.79 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 9 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.58 11.84 7.54 -12.64 -0.10 11.75 16 14 O -0.54 -12.61 14.19 5.25 0.07 -12.54 16 15 C -0.01 -0.15 6.66 -82.06 -0.55 -0.70 16 16 C -0.19 -2.80 7.33 -38.96 -0.29 -3.09 16 17 C 0.01 0.18 7.72 -17.38 -0.13 0.05 16 18 Br 0.02 0.26 34.11 -68.01 -2.32 -2.06 16 19 N -0.26 -4.04 11.90 31.88 0.38 -3.67 16 20 N -0.25 -3.97 3.75 -63.88 -0.24 -4.21 16 21 C 0.08 1.02 11.04 59.85 0.66 1.68 16 22 H 0.06 0.85 6.04 -51.93 -0.31 0.54 16 23 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.07 0.66 8.09 -51.93 -0.42 0.24 16 25 H 0.09 1.42 8.01 -51.93 -0.42 1.00 16 26 H 0.08 1.14 5.11 -51.93 -0.27 0.88 16 27 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 28 H 0.05 1.30 7.43 -51.93 -0.39 0.92 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.20 2.48 3.29 -52.49 -0.17 2.31 16 31 H 0.09 1.01 8.14 -51.92 -0.42 0.59 16 32 H 0.12 1.79 5.94 -51.93 -0.31 1.48 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 297.41 15.07 4.48 4.48 Total: -1.00 -31.26 297.41 -6.42 -37.68 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -3.51 Total: -0.88 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -0.56 Total: 1.96 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.44 Total: -44.90 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 35 Polarization: 0.26 SS G_CDS: -2.32 Total: -2.06 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.26 -6.42 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277038515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.631 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds