Wall clock time and date at job start Fri Apr 10 2020 23:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47387 * 2 1 4 4 C 1.46489 * 120.00047 * 261.46766 * 3 2 1 5 5 C 1.50708 * 109.47133 * 270.00101 * 4 3 2 6 6 H 1.08001 * 119.99704 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00048 * 180.02562 * 5 4 3 8 8 N 1.31520 * 120.00342 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47056 * 60.00301 * 9 7 5 11 11 H 1.48502 * 109.47463 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47268 * 300.00158 * 9 7 5 13 13 C 1.34771 * 119.99560 * 81.46759 * 3 2 1 14 14 O 1.21632 * 120.00138 * 179.46163 * 13 3 2 15 15 C 1.47171 * 120.00570 * 359.46042 * 13 3 2 16 16 C 1.38403 * 126.87395 * 350.94812 * 15 13 3 17 17 C 1.39748 * 105.35027 * 180.02562 * 16 15 13 18 18 Br 1.89101 * 126.07834 * 180.02562 * 17 16 15 19 19 N 1.30918 * 107.84158 * 359.97438 * 17 16 15 20 20 N 1.28446 * 110.91767 * 0.02562 * 19 17 16 21 21 C 1.46497 * 125.17414 * 179.97438 * 20 19 17 22 22 H 1.09003 * 109.46909 * 306.58756 * 1 2 3 23 23 H 1.09000 * 109.47133 * 66.58704 * 1 2 3 24 24 H 1.09000 * 109.47810 * 186.58450 * 1 2 3 25 25 H 1.08996 * 109.46698 * 239.99919 * 2 1 3 26 26 H 1.09001 * 109.46936 * 120.00345 * 2 1 3 27 27 H 1.09002 * 109.47401 * 29.99906 * 4 3 2 28 28 H 1.08996 * 109.47547 * 150.00113 * 4 3 2 29 29 H 0.96996 * 120.00103 * 179.97438 * 8 7 5 30 30 H 1.08002 * 127.32257 * 359.97438 * 16 15 13 31 31 H 1.09007 * 109.46812 * 85.80147 * 21 20 19 32 32 H 1.08995 * 109.46999 * 205.80107 * 21 20 19 33 33 H 1.08998 * 109.47518 * 325.80383 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4400 2.0090 -1.2546 5 6 3.9094 1.7558 -1.4740 6 1 4.4728 1.1847 -0.7509 7 6 4.5346 2.2541 -2.5973 8 7 3.8488 2.9509 -3.4771 9 14 6.3560 1.9409 -2.8689 10 1 6.6013 0.4781 -2.9410 11 1 6.7837 2.5783 -4.1402 12 1 7.1311 2.5179 -1.7412 13 6 2.0798 2.0742 1.1543 14 8 2.4944 3.2176 1.1559 15 6 1.6450 1.4475 2.4129 16 6 0.9938 0.2345 2.5551 17 6 0.7972 0.0791 3.9300 18 35 -0.0455 -1.3873 4.7757 19 7 1.3011 1.1289 4.5284 20 7 1.8031 1.9466 3.6745 21 6 2.4471 3.2206 4.0037 22 1 -0.3633 0.6126 0.8252 23 1 -0.3633 0.4083 -0.9430 24 1 -0.3635 -1.0208 0.1178 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.8709 1.5855 -2.0821 28 1 2.2603 3.0828 -1.2020 29 1 4.2888 3.3017 -4.2671 30 1 0.6995 -0.4467 1.7704 31 1 3.4984 3.0475 4.2338 32 1 2.3679 3.8980 3.1535 33 1 1.9541 3.6641 4.8687 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277038515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:05:00 Heat of formation + Delta-G solvation = 50.882973 kcal Electronic energy + Delta-G solvation = -18887.893024 eV Core-core repulsion = 15804.257261 eV Total energy + Delta-G solvation = -3083.635764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 315.032 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.84840 -40.56888 -37.46656 -35.16989 -34.59132 -32.80026 -31.94200 -31.35199 -29.19963 -27.65577 -25.59227 -24.52648 -23.43807 -22.16859 -20.35638 -18.67900 -18.28108 -17.78575 -17.47180 -17.02013 -16.20513 -15.86360 -15.80480 -15.14290 -14.67509 -14.30640 -14.07423 -13.80950 -13.64515 -13.31967 -13.18182 -13.06766 -12.68147 -12.56762 -12.31012 -12.20980 -12.11524 -11.91606 -11.75555 -11.33162 -10.95057 -10.63173 -10.30987 -9.97656 -9.55740 -8.22578 -6.36850 0.09207 0.15110 1.11311 1.37316 1.39912 1.42123 1.49876 2.10348 2.25899 2.42043 3.07847 3.28254 3.48572 4.04518 4.05024 4.22919 4.23135 4.29529 4.34804 4.56260 4.63726 4.88693 4.91298 5.02337 5.07798 5.19721 5.37857 5.41370 5.53058 5.77594 6.03390 6.49278 6.68397 6.70595 7.12518 7.34968 8.84493 Molecular weight = 315.03amu Principal moments of inertia in cm(-1) A = 0.023605 B = 0.003927 C = 0.003692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.907940 B = 7128.435204 C = 7581.190158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.078 3.922 3 N -0.577 5.577 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.053 0.947 7 C 0.014 3.986 8 N -0.925 5.925 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.572 3.428 14 O -0.580 6.580 15 C -0.034 4.034 16 C -0.169 4.169 17 C 0.003 3.997 18 Br 0.056 6.944 19 N -0.258 5.258 20 N -0.251 5.251 21 C 0.075 3.925 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.100 0.900 27 H 0.034 0.966 28 H 0.006 0.994 29 H 0.268 0.732 30 H 0.217 0.783 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.076 -10.473 15.639 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.043 4.043 3 N -0.307 5.307 4 C 0.143 3.857 5 C -0.583 4.583 6 H 0.071 0.929 7 C -0.186 4.186 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.204 1.204 13 C 0.359 3.641 14 O -0.462 6.462 15 C -0.163 4.163 16 C -0.198 4.198 17 C -0.231 4.231 18 Br 0.137 6.863 19 N -0.095 5.095 20 N -0.041 5.041 21 C -0.064 4.064 22 H 0.078 0.922 23 H 0.075 0.925 24 H 0.128 0.872 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.052 0.948 28 H 0.024 0.976 29 H 0.077 0.923 30 H 0.233 0.767 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.913 -9.698 16.802 21.350 hybrid contribution 1.097 0.405 -1.342 1.780 sum -7.816 -9.294 15.460 19.659 Atomic orbital electron populations 1.22453 0.93881 1.04580 1.02589 1.22372 0.95719 0.81430 1.04819 1.47982 1.60981 1.14653 1.07050 1.18887 0.94325 0.92701 0.79775 1.21628 0.95399 1.34726 1.06594 0.92894 1.25763 1.02976 0.94407 0.95425 1.70026 1.38279 1.36185 1.11952 0.85523 0.79262 0.79045 0.77321 1.18597 1.20372 1.20439 1.17176 0.78731 0.85245 0.82963 1.90707 1.49482 1.19405 1.86587 1.21472 1.09458 0.97874 0.87483 1.23567 1.02812 0.96923 0.96524 1.23781 1.08680 0.97238 0.93414 1.96704 1.76690 1.32737 1.80180 1.73173 1.13275 1.01741 1.21272 1.45902 1.39127 1.16974 1.02066 1.22676 0.98914 0.79380 1.05445 0.92219 0.92524 0.87154 0.89244 0.88256 0.94820 0.97631 0.92317 0.76683 0.88461 0.87884 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.11 8.42 71.98 0.61 -3.50 16 2 C 0.08 2.34 5.65 86.38 0.49 2.82 16 3 N -0.58 -23.97 2.48 -830.35 -2.06 -26.03 16 4 C 0.26 13.64 5.12 85.64 0.44 14.07 16 5 C -0.54 -30.36 9.39 25.60 0.24 -30.12 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.78 5.46 84.65 0.46 1.24 16 8 N -0.93 -54.19 13.29 21.45 0.28 -53.90 16 9 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 10 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 C 0.57 24.07 7.54 86.59 0.65 24.73 16 14 O -0.58 -28.53 14.19 -4.13 -0.06 -28.59 16 15 C -0.03 -1.16 6.66 40.79 0.27 -0.89 16 16 C -0.17 -4.65 7.33 22.67 0.17 -4.48 16 17 C 0.00 0.07 7.72 85.19 0.66 0.73 16 18 Br 0.06 1.12 34.11 -20.37 -0.69 0.42 16 19 N -0.26 -7.64 11.90 -53.05 -0.63 -8.27 16 20 N -0.25 -7.82 3.75 -356.03 -1.33 -9.16 16 21 C 0.07 1.92 11.04 127.77 1.41 3.33 16 22 H 0.06 1.46 6.04 -2.39 -0.01 1.44 16 23 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 24 H 0.11 1.67 8.09 -2.39 -0.02 1.65 16 25 H 0.09 2.70 8.01 -2.39 -0.02 2.68 16 26 H 0.10 2.59 5.11 -2.39 -0.01 2.58 16 27 H 0.03 1.75 8.07 -2.39 -0.02 1.73 16 28 H 0.01 0.33 7.43 -2.39 -0.02 0.31 16 29 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.22 4.80 3.29 -2.91 -0.01 4.79 16 31 H 0.10 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.10 3.12 5.94 -2.39 -0.01 3.11 16 33 H 0.12 2.31 8.14 -2.39 -0.02 2.30 16 Total: -1.00 -68.76 297.41 4.07 -64.69 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.14 Total: 7.18 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.39 Total: 7.93 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -3.74 Total: -97.37 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.06 Total: -28.59 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 35 Polarization: 1.12 SS G_CDS: -0.69 Total: 0.42 kcal Total: -68.76 4.07 -64.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277038515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.574 kcal (2) G-P(sol) polarization free energy of solvation -68.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds